CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name Millenaar_A2_ETH_Rep1_ATH1

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
147.0 99.9 14.0 At1g03010 839556 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM O.I. C.G. H.G.
83.2 99.9 79.3 At3g59900 825160 ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth. O.I. C.G. H.G.
74.1 99.9 77.7 At4g34770 829629 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
62.2 99.8 157.6 At1g20190 838608 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
48.7 99.8 24.1 At5g49170 834976 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.4 99.8 60.5 At1g73830 843719 BEE3 (BR ENHANCED EXPRESSION 3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO O.I. C.G. H.G.
37.6 99.7 13.7 At1g18350 838416 ATMKK7 MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance. O.I. C.G. H.G.
32.7 99.7 37.7 At1g18400 838421 BEE1 (BR Enhanced Expression 1) F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMO O.I. C.G. H.G.
32.4 99.7 24.6 At5g22310 832291 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV O.I. C.G. H.G.
30.4 99.7 90.1 At3g12710 820453 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAM O.I. C.G. H.G.
28.5 99.7 86.2 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
26.9 99.7 70.0 At5g64330 836554 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3) Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains. O.I. C.G. H.G.
26.6 99.7 53.8 At5g50335 835100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.4 99.7 42.5 At3g26200 822221 CYP71B22 putative cytochrome P450 O.I. C.G. H.G.
24.9 99.6 17.5 At5g44210 834444 ERF9 (ERF DOMAIN PROTEIN 9) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
24.2 99.6 63.1 At1g23080 838916 PIN7 (PIN-FORMED 7) Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. O.I. C.G. H.G.
23.5 99.6 19.0 At5g07000 830591 ST2B (SULFOTRANSFERASE 2B) Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates. O.I. C.G. H.G.
23.0 99.6 59.6 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.1 99.6 24.7 At1g17700 838346 PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOF O.I. C.G. H.G.
22.0 99.6 96.6 At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM O.I. C.G. H.G.
21.4 99.6 64.5 At3g28930 822529 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 O.I. C.G. H.G.
20.5 99.6 252.7 At5g44420 834469 PDF1.2 Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
20.5 99.6 42.5 At1g44830 841047 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
19.8 99.6 254.4 At2g26020 817143 PDF1.2b (plant defensin 1.2b) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
19.8 99.6 17.5 At2g46640 819276 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
19.4 99.6 19.6 At5g26230 832692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPV O.I. C.G. H.G.
18.6 99.5 171.5 At1g52190 841649 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. C.G. H.G.
17.8 99.5 50.0 At1g53870 841824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.7 99.5 20.4 At1g75300 843867 isoflavone reductase, putative encodes a protein whose sequence is similar to an isoflavone reductase O.I. C.G. H.G.
17.3 99.5 9.2 At5g41140 834116 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
17.2 99.5 117.7 At2g44080 819014 ARL (ARGOS-LIKE) Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1. O.I. C.G. H.G.
16.4 99.5 151.6 At2g26690 817210 nitrate transporter (NTP2) F:transporter activity;P:response to jasmonic acid stimulus, response to wounding;C:membrane;BPOMF O.I. C.G. H.G.
16.4 99.5 5.9 At4g09480 3770265 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
15.5 99.5 70.5 At3g07010 819886 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
15.2 99.4 280.3 At5g14920 831344 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA O.I. C.G. H.G.
15.1 99.4 19.4 At1g04310 839549 ERS2 (ETHYLENE RESPONSE SENSOR 2) encodes an ethylene receptor related to bacterial two-component histidine kinases. O.I. C.G. H.G.
14.8 99.4 34.1 At5g28300 832914 trihelix DNA-binding protein, putative F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBVA O.I. C.G. H.G.
14.7 99.4 59.4 At5g65310 836656 ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5) Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. O.I. C.G. H.G.
14.7 99.4 30.7 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
14.6 99.4 96.8 At5g63180 836439 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO O.I. C.G. H.G.
14.6 99.4 16.3 At5g51670 835241 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;POB O.I. C.G. H.G.
14.3 99.4 41.6 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. O.I. C.G. H.G.
14.0 99.4 12.3 At5g11610 831033 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF O.I. C.G. H.G.
13.9 99.4 13.3 At5g06710 830560 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) Homeobox-leucine zipper protein. O.I. C.G. H.G.
13.6 99.4 42.8 At3g60520 825223 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.4 99.4 23.8 At5g42680 834277 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.3 99.4 64.2 At2g29310 817480 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
12.5 99.3 61.5 At2g41230 818722 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
12.4 99.3 149.1 At1g70890 843427 MLP43 (MLP-LIKE PROTEIN 43) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;P O.I. C.G. H.G.
12.0 99.3 191.1 At5g22580 832321 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF O.I. C.G. H.G.
12.0 99.3 65.0 At2g42320 818833 nucleolar protein gar2-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
11.6 99.3 18.9 At2g15080 815997 AtRLP19 (Receptor Like Protein 19) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
11.4 99.3 82.3 At3g57240 824891 BG3 (BETA-1,3-GLUCANASE 3) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
11.3 99.3 95.2 At2g42610 818861 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
11.2 99.2 37.5 At2g39130 818499 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:biological_process unknown;C:plasma membrane;MPFOBAV O.I. C.G. H.G.
11.0 99.2 22.3 At1g23060 838914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV O.I. C.G. H.G.
10.9 99.2 144.4 At4g19120 827650 ERD3 (early-responsive to dehydration 3) F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF O.I. C.G. H.G.
10.7 99.2 31.0 At1g67050 843025 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBV O.I. C.G. H.G.
10.6 99.2 208.0 At1g69530 843288 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
10.6 99.2 72.8 At1g21130 838709 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
10.5 99.2 169.1 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
10.5 99.2 107.5 At5g48900 834948 pectate lyase family protein F:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
10.5 99.2 101.0 At1g19350 838518 BES1 (BRI1-EMS-SUPPRESSOR 1) Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes O.I. C.G. H.G.
10.3 99.2 22.8 At3g23295 - - O.I. C.G. H.G.
10.3 99.2 7.9 At2g40530 818648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.2 99.2 33.5 At1g53440 841779 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
10.2 99.2 30.3 At5g58390 835952 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
10.2 99.2 18.3 At1g53700 841807 WAG1 (WAG 1) The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. O.I. C.G. H.G.
10.1 99.2 23.5 At5g23870 832452 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOB O.I. C.G. H.G.
9.9 99.1 71.4 At5g61160 836237 AACT1 (anthocyanin 5-aromatic acyltransferase 1) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
9.8 99.1 75.0 At3g28290 822455 AT14A Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed. O.I. C.G. H.G.
9.8 99.1 38.8 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.8 99.1 11.1 At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family O.I. C.G. H.G.
9.7 99.1 99.4 At5g25350 832607 EBF2 (EIN3-BINDING F BOX PROTEIN 2) Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. O.I. C.G. H.G.
9.2 99.1 37.3 At3g62110 825384 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV O.I. C.G. H.G.
9.1 99.1 59.3 At1g78490 844185 CYP708A3 member of CYP708A O.I. C.G. H.G.
9.1 99.1 19.9 At4g16870 3770172 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
9.1 99.1 12.0 At2g18350 816350 AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
9.1 99.1 10.5 At1g77870 844123 MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 11.3 At5g27320 832790 GID1C (GA INSENSITIVE DWARF1C) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. O.I. C.G. H.G.
8.7 99.0 46.6 At2g47930 819405 AGP26 (ARABINOGALACTAN PROTEIN 26) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA O.I. C.G. H.G.
8.7 99.0 39.2 At4g08470 826406 MAPKKK10 member of MEKK subfamily O.I. C.G. H.G.
8.6 99.0 10.0 At2g36470 818221 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
147.0	99.9	14.0	At1g03010	839556	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM	O.I.	C.G.	H.G.
83.2	99.9	79.3	At3g59900	825160	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.	O.I.	C.G.	H.G.
74.1	99.9	77.7	At4g34770	829629	auxin-responsive family protein	F:unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
62.2	99.8	157.6	At1g20190	838608	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
48.7	99.8	24.1	At5g49170	834976	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.4	99.8	60.5	At1g73830	843719	BEE3 (BR ENHANCED EXPRESSION 3)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO	O.I.	C.G.	H.G.
37.6	99.7	13.7	At1g18350	838416	ATMKK7	MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance.	O.I.	C.G.	H.G.
32.7	99.7	37.7	At1g18400	838421	BEE1 (BR Enhanced Expression 1)	F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMO	O.I.	C.G.	H.G.
32.4	99.7	24.6	At5g22310	832291	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV	O.I.	C.G.	H.G.
30.4	99.7	90.1	At3g12710	820453	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAM	O.I.	C.G.	H.G.
28.5	99.7	86.2	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
26.9	99.7	70.0	At5g64330	836554	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains.	O.I.	C.G.	H.G.
26.6	99.7	53.8	At5g50335	835100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.4	99.7	42.5	At3g26200	822221	CYP71B22	putative cytochrome P450	O.I.	C.G.	H.G.
24.9	99.6	17.5	At5g44210	834444	ERF9 (ERF DOMAIN PROTEIN 9)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
24.2	99.6	63.1	At1g23080	838916	PIN7 (PIN-FORMED 7)	Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.	O.I.	C.G.	H.G.
23.5	99.6	19.0	At5g07000	830591	ST2B (SULFOTRANSFERASE 2B)	Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.	O.I.	C.G.	H.G.
23.0	99.6	59.6	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.1	99.6	24.7	At1g17700	838346	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOF	O.I.	C.G.	H.G.
22.0	99.6	96.6	At4g30020	829125	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM	O.I.	C.G.	H.G.
21.4	99.6	64.5	At3g28930	822529	AIG2 (AVRRPT2-INDUCED GENE 2)	avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	O.I.	C.G.	H.G.
20.5	99.6	252.7	At5g44420	834469	PDF1.2	Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
20.5	99.6	42.5	At1g44830	841047	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
19.8	99.6	254.4	At2g26020	817143	PDF1.2b (plant defensin 1.2b)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
19.8	99.6	17.5	At2g46640	819276	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
19.4	99.6	19.6	At5g26230	832692	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPV	O.I.	C.G.	H.G.
18.6	99.5	171.5	At1g52190	841649	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO	O.I.	C.G.	H.G.
17.8	99.5	50.0	At1g53870	841824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.7	99.5	20.4	At1g75300	843867	isoflavone reductase, putative	encodes a protein whose sequence is similar to an isoflavone reductase	O.I.	C.G.	H.G.
17.3	99.5	9.2	At5g41140	834116	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
17.2	99.5	117.7	At2g44080	819014	ARL (ARGOS-LIKE)	Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1.	O.I.	C.G.	H.G.
16.4	99.5	151.6	At2g26690	817210	nitrate transporter (NTP2)	F:transporter activity;P:response to jasmonic acid stimulus, response to wounding;C:membrane;BPOMF	O.I.	C.G.	H.G.
16.4	99.5	5.9	At4g09480	3770265	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
15.5	99.5	70.5	At3g07010	819886	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
15.2	99.4	280.3	At5g14920	831344	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA	O.I.	C.G.	H.G.
15.1	99.4	19.4	At1g04310	839549	ERS2 (ETHYLENE RESPONSE SENSOR 2)	encodes an ethylene receptor related to bacterial two-component histidine kinases.	O.I.	C.G.	H.G.
14.8	99.4	34.1	At5g28300	832914	trihelix DNA-binding protein, putative	F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBVA	O.I.	C.G.	H.G.
14.7	99.4	59.4	At5g65310	836656	ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5)	Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment.	O.I.	C.G.	H.G.
14.7	99.4	30.7	At2g39850	818572	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
14.6	99.4	96.8	At5g63180	836439	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO	O.I.	C.G.	H.G.
14.6	99.4	16.3	At5g51670	835241	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;POB	O.I.	C.G.	H.G.
14.3	99.4	41.6	At1g78970	844237	LUP1 (LUPEOL SYNTHASE 1)	Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.	O.I.	C.G.	H.G.
14.0	99.4	12.3	At5g11610	831033	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF	O.I.	C.G.	H.G.
13.9	99.4	13.3	At5g06710	830560	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	Homeobox-leucine zipper protein.	O.I.	C.G.	H.G.
13.6	99.4	42.8	At3g60520	825223	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.4	99.4	23.8	At5g42680	834277	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.3	99.4	64.2	At2g29310	817480	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
12.5	99.3	61.5	At2g41230	818722	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
12.4	99.3	149.1	At1g70890	843427	MLP43 (MLP-LIKE PROTEIN 43)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;P	O.I.	C.G.	H.G.
12.0	99.3	191.1	At5g22580	832321	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF	O.I.	C.G.	H.G.
12.0	99.3	65.0	At2g42320	818833	nucleolar protein gar2-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
11.6	99.3	18.9	At2g15080	815997	AtRLP19 (Receptor Like Protein 19)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
11.4	99.3	82.3	At3g57240	824891	BG3 (BETA-1,3-GLUCANASE 3)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
11.3	99.3	95.2	At2g42610	818861	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
11.2	99.2	37.5	At2g39130	818499	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:biological_process unknown;C:plasma membrane;MPFOBAV	O.I.	C.G.	H.G.
11.0	99.2	22.3	At1g23060	838914	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV	O.I.	C.G.	H.G.
10.9	99.2	144.4	At4g19120	827650	ERD3 (early-responsive to dehydration 3)	F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF	O.I.	C.G.	H.G.
10.7	99.2	31.0	At1g67050	843025	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBV	O.I.	C.G.	H.G.
10.6	99.2	208.0	At1g69530	843288	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
10.6	99.2	72.8	At1g21130	838709	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
10.5	99.2	169.1	At4g32460	829381	-	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
10.5	99.2	107.5	At5g48900	834948	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
10.5	99.2	101.0	At1g19350	838518	BES1 (BRI1-EMS-SUPPRESSOR 1)	Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes	O.I.	C.G.	H.G.
10.3	99.2	22.8	At3g23295		-	-	O.I.	C.G.	H.G.
10.3	99.2	7.9	At2g40530	818648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.2	99.2	33.5	At1g53440	841779	leucine-rich repeat family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
10.2	99.2	30.3	At5g58390	835952	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
10.2	99.2	18.3	At1g53700	841807	WAG1 (WAG 1)	The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	O.I.	C.G.	H.G.
10.1	99.2	23.5	At5g23870	832452	pectinacetylesterase family protein	F:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOB	O.I.	C.G.	H.G.
9.9	99.1	71.4	At5g61160	836237	AACT1 (anthocyanin 5-aromatic acyltransferase 1)	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
9.8	99.1	75.0	At3g28290	822455	AT14A	Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.	O.I.	C.G.	H.G.
9.8	99.1	38.8	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.8	99.1	11.1	At5g62160	836336	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	member of Fe(II) transporter isolog family	O.I.	C.G.	H.G.
9.7	99.1	99.4	At5g25350	832607	EBF2 (EIN3-BINDING F BOX PROTEIN 2)	Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.	O.I.	C.G.	H.G.
9.2	99.1	37.3	At3g62110	825384	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV	O.I.	C.G.	H.G.
9.1	99.1	59.3	At1g78490	844185	CYP708A3	member of CYP708A	O.I.	C.G.	H.G.
9.1	99.1	19.9	At4g16870	3770172	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
9.1	99.1	12.0	At2g18350	816350	AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.1	99.1	10.5	At1g77870	844123	MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR)	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	11.3	At5g27320	832790	GID1C (GA INSENSITIVE DWARF1C)	Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.	O.I.	C.G.	H.G.
8.7	99.0	46.6	At2g47930	819405	AGP26 (ARABINOGALACTAN PROTEIN 26)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA	O.I.	C.G.	H.G.
8.7	99.0	39.2	At4g08470	826406	MAPKKK10	member of MEKK subfamily	O.I.	C.G.	H.G.
8.6	99.0	10.0	At2g36470	818221	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	Millenaar_A2_ETH_Rep1_ATH1
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name Millenaar_A2_ETH_Rep1_ATH1 GSE experiment -

GSM ID -

Assay name Millenaar_A2_ETH_Rep1_ATH1

GSE experiment -