CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM77182

Assay name 00h pgm (Col-0) mutant replicate B

GSE experiment GSE3424: Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
104.8 99.9 127.9 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.
96.8 99.9 30.6 At1g19510 838537 ATRL5 (ARABIDOPSIS RAD-LIKE 5) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMO O.I. C.G. H.G.
93.9 99.9 243.5 At1g72060 843537 serine-type endopeptidase inhibitor F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
61.9 99.8 56.1 At5g22390 832300 unknown protein F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
60.4 99.8 56.4 At5g39660 833962 CDF2 (CYCLING DOF FACTOR 2) Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. O.I. C.G. H.G.
57.8 99.8 99.0 At3g21870 821742 CYCP2 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
52.1 99.8 31.5 At4g15700 827247 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
40.5 99.8 160.0 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
37.1 99.7 140.2 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
34.2 99.7 62.7 At1g79700 844309 ovule development protein, putative F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
32.8 99.7 114.6 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
31.0 99.7 35.4 At3g62950 825470 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO O.I. C.G. H.G.
29.2 99.7 6.2 At5g03310 831879 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
26.0 99.7 15.0 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
25.4 99.6 119.1 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
24.9 99.6 101.9 At5g53970 835480 aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment O.I. C.G. H.G.
24.8 99.6 37.6 At4g18740 827608 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF O.I. C.G. H.G.
24.0 99.6 56.4 At3g07870 819978 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
22.5 99.6 338.3 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
22.1 99.6 133.6 At1g68440 843173 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
22.0 99.6 63.9 At5g23050 832369 AAE17 (ACYL-ACTIVATING ENZYME 17) F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
20.7 99.6 72.8 At1g21400 838739 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
20.6 99.6 56.9 At4g16690 827371 MES16 (METHYL ESTERASE 16) Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots. O.I. C.G. H.G.
20.1 99.6 84.3 At2g04795 815023 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
20.0 99.6 54.5 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
20.0 99.6 28.6 At4g15660 827243 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
19.4 99.6 46.2 At2g43330 818934 INT1 (INOSITOL TRANSPORTER 1) Encodes a tonoplast-localized myo-inositol exporter, involved in efflux of myo-inositol from the vacuole to the cytosol. The gene is ubiquitously expressed. Reduced root growth in knock-out mutants grown on low inositol agar medium. O.I. C.G. H.G.
19.0 99.5 68.2 At5g16650 831527 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
18.5 99.5 144.9 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB O.I. C.G. H.G.
18.5 99.5 81.2 At4g28270 828942 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOV O.I. C.G. H.G.
18.5 99.5 37.3 At5g57910 835902 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
18.3 99.5 70.1 At3g13062 820493 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
18.3 99.5 19.8 At4g15690 827246 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
18.1 99.5 36.4 At3g17650 821032 YSL5 (YELLOW STRIPE LIKE 5) Arabidopsis thaliana metal-nicotianamine transporter YSL5 O.I. C.G. H.G.
17.6 99.5 225.3 At3g50480 824212 HR4 (HOMOLOG OF RPW8 4) Homolog of RPW8 O.I. C.G. H.G.
17.5 99.5 86.4 At3g22060 821768 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain O.I. C.G. H.G.
17.3 99.5 19.6 At4g15430 827214 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
17.3 99.5 15.3 At5g04880 3770684 - pseudogene of ABC transporter family protein O.I. C.G. H.G.
16.8 99.5 38.0 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
16.7 99.5 33.0 At4g15680 827245 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB O.I. C.G. H.G.
16.5 99.5 96.4 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
16.4 99.5 117.8 At1g22890 838896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.3 99.5 9.3 At4g19820 827726 glycosyl hydrolase family 18 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;MBFOVPA O.I. C.G. H.G.
16.1 99.5 95.2 At1g35420 840434 dienelactone hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;BFOPMA O.I. C.G. H.G.
16.1 99.5 30.7 At1g49200 841343 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
15.2 99.4 22.4 At3g26230 822224 CYP71B24 putative cytochrome P450 O.I. C.G. H.G.
15.0 99.4 53.9 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA O.I. C.G. H.G.
14.8 99.4 54.3 At5g18140 831932 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV O.I. C.G. H.G.
14.5 99.4 119.7 At4g19160 827654 unknown protein F:unknown;P:biological_process unknown;C:unknown;BPOM O.I. C.G. H.G.
14.2 99.4 46.9 At3g06080 819781 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.0 99.4 80.2 At3g51000 824264 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
14.0 99.4 36.1 At5g02150 831805 binding F:binding;P:unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
13.8 99.4 50.2 At1g54740 841915 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF O.I. C.G. H.G.
13.5 99.4 57.5 At1g03400 838751 2-oxoglutarate-dependent dioxygenase, putative A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. O.I. C.G. H.G.
13.4 99.4 158.6 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
13.4 99.4 139.1 At5g02840 831766 LCL1 (LHY/CCA1-like 1) CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
13.4 99.4 13.2 At4g19510 827692 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA O.I. C.G. H.G.
13.3 99.4 30.0 At3g15770 820820 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
13.2 99.4 15.4 At2g35170 818084 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF O.I. C.G. H.G.
13.1 99.4 120.4 At4g37610 829915 BT5 (BTB AND TAZ DOMAIN PROTEIN 5) BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves. O.I. C.G. H.G.
13.1 99.4 83.2 At4g32870 829423 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
13.0 99.4 83.1 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
13.0 99.4 20.0 At5g56860 835788 GNC (GATA, nitrate-inducible, carbon metabolism-involved) F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB O.I. C.G. H.G.
12.9 99.3 251.7 At3g13750 820584 BGAL1 (Beta galactosidase 1) beta-galactosidase, glycosyl hydrolase family 35 O.I. C.G. H.G.
12.9 99.3 36.5 At3g61210 825293 embryo-abundant protein-related F:unknown;P:unknown;C:cellular_component unknown;BPFOMA O.I. C.G. H.G.
12.8 99.3 102.2 At5g53160 835397 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.8 99.3 45.7 At1g22630 838869 unknown protein F:unknown;P:unknown;C:chloroplast;MPBO O.I. C.G. H.G.
12.8 99.3 42.6 At1g05840 837094 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO O.I. C.G. H.G.
12.7 99.3 190.4 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
12.7 99.3 125.1 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. O.I. C.G. H.G.
12.6 99.3 18.7 At1g54210 841861 ATG12A (AUTOPHAGY 12 A) F:protein binding;P:autophagy, protein ubiquitination during ubiquitin-dependent protein catabolic process, autophagic vacuole formation;C:cytoplasm;MFPO O.I. C.G. H.G.
12.4 99.3 41.5 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
12.2 99.3 42.9 At1g75100 843847 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. O.I. C.G. H.G.
12.1 99.3 84.1 At1g17990 838379 12-oxophytodienoate reductase, putative F:unknown;P:unknown;C:unknown;BOFPAM O.I. C.G. H.G.
12.0 99.3 81.9 At1g55000 841942 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB O.I. C.G. H.G.
12.0 99.3 60.7 At1g23090 838917 AST91 (SULFATE TRANSPORTER 91) Encodes AST91 mRNA for sulfate transporter. O.I. C.G. H.G.
11.9 99.3 88.7 At1g64660 842774 ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis. O.I. C.G. H.G.
11.8 99.3 298.4 At3g29240 822579 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;BOP O.I. C.G. H.G.
11.8 99.3 148.1 At2g29670 817517 binding F:binding;P:unknown;C:chloroplast;PBOAM O.I. C.G. H.G.
11.8 99.3 50.2 At5g54610 835550 ANK (ankyrin) Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family. O.I. C.G. H.G.
11.8 99.3 29.4 At1g02750 839432 zinc ion binding F:zinc ion binding;P:response to water deprivation;C:intracellular;PM O.I. C.G. H.G.
11.7 99.3 64.3 At1g10360 837575 ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
11.5 99.3 123.8 At1g70660 843403 MMZ2 (MMS ZWEI HOMOLOGE 2) MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible. O.I. C.G. H.G.
11.5 99.3 104.4 At2g45170 819125 AtATG8e Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes. O.I. C.G. H.G.
11.4 99.3 221.2 At3g57520 824919 AtSIP2 (Arabidopsis thaliana seed imbibition 2) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO O.I. C.G. H.G.
11.4 99.3 74.8 At3g12360 820414 ITN1 (INCREASED TOLERANCE TO NACL) Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production. O.I. C.G. H.G.
11.3 99.3 132.0 At3g60420 825213 - F:unknown;P:unknown;C:cellular_component unknown;OBFPM O.I. C.G. H.G.
11.3 99.3 72.4 At3g02690 821274 integral membrane family protein F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF O.I. C.G. H.G.
11.3 99.3 61.6 At5g35330 833487 MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02) Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. O.I. C.G. H.G.
11.3 99.3 55.2 At5g24520 832523 TTG1 (TRANSPARENT TESTA GLABRA 1) Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. O.I. C.G. H.G.
11.2 99.2 62.4 At1g10340 837573 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
11.2 99.2 37.5 At3g23760 821958 - F:molecular_function unknown;P:biological_process unknown;C:vacuole;PMO O.I. C.G. H.G.
11.1 99.2 49.9 At5g58800 835997 quinone reductase family protein F:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMV O.I. C.G. H.G.
11.0 99.2 75.3 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta O.I. C.G. H.G.
11.0 99.2 50.6 At1g62960 842598 ACS10 (ACC SYNTHASE 10) Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity. O.I. C.G. H.G.
10.8 99.2 398.1 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
10.8 99.2 56.6 At2g42890 818890 AML2 (ARABIDOPSIS-MEI2-LIKE 2) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices. O.I. C.G. H.G.
10.8 99.2 46.6 At2g38330 818413 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPAFM O.I. C.G. H.G.
10.6 99.2 191.1 At3g48360 823994 BT2 (BTB AND TAZ DOMAIN PROTEIN 2) encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. O.I. C.G. H.G.
10.6 99.2 31.3 At3g52430 824408 PAD4 (PHYTOALEXIN DEFICIENT 4) Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
104.8	99.9	127.9	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.
96.8	99.9	30.6	At1g19510	838537	ATRL5 (ARABIDOPSIS RAD-LIKE 5)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMO	O.I.	C.G.	H.G.
93.9	99.9	243.5	At1g72060	843537	serine-type endopeptidase inhibitor	F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
61.9	99.8	56.1	At5g22390	832300	unknown protein	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
60.4	99.8	56.4	At5g39660	833962	CDF2 (CYCLING DOF FACTOR 2)	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	O.I.	C.G.	H.G.
57.8	99.8	99.0	At3g21870	821742	CYCP2	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
52.1	99.8	31.5	At4g15700	827247	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
40.5	99.8	160.0	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
37.1	99.7	140.2	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
34.2	99.7	62.7	At1g79700	844309	ovule development protein, putative	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
32.8	99.7	114.6	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
31.0	99.7	35.4	At3g62950	825470	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO	O.I.	C.G.	H.G.
29.2	99.7	6.2	At5g03310	831879	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
26.0	99.7	15.0	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
25.4	99.6	119.1	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
24.9	99.6	101.9	At5g53970	835480	aminotransferase, putative	encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment	O.I.	C.G.	H.G.
24.8	99.6	37.6	At4g18740	827608	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF	O.I.	C.G.	H.G.
24.0	99.6	56.4	At3g07870	819978	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
22.5	99.6	338.3	At3g47340	823888	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
22.1	99.6	133.6	At1g68440	843173	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
22.0	99.6	63.9	At5g23050	832369	AAE17 (ACYL-ACTIVATING ENZYME 17)	F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
20.7	99.6	72.8	At1g21400	838739	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
20.6	99.6	56.9	At4g16690	827371	MES16 (METHYL ESTERASE 16)	Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.	O.I.	C.G.	H.G.
20.1	99.6	84.3	At2g04795	815023	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
20.0	99.6	54.5	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
20.0	99.6	28.6	At4g15660	827243	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
19.4	99.6	46.2	At2g43330	818934	INT1 (INOSITOL TRANSPORTER 1)	Encodes a tonoplast-localized myo-inositol exporter, involved in efflux of myo-inositol from the vacuole to the cytosol. The gene is ubiquitously expressed. Reduced root growth in knock-out mutants grown on low inositol agar medium.	O.I.	C.G.	H.G.
19.0	99.5	68.2	At5g16650	831527	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
18.5	99.5	144.9	At5g21170	832243	5'-AMP-activated protein kinase beta-2 subunit, putative	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
18.5	99.5	81.2	At4g28270	828942	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOV	O.I.	C.G.	H.G.
18.5	99.5	37.3	At5g57910	835902	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
18.3	99.5	70.1	At3g13062	820493	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
18.3	99.5	19.8	At4g15690	827246	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
18.1	99.5	36.4	At3g17650	821032	YSL5 (YELLOW STRIPE LIKE 5)	Arabidopsis thaliana metal-nicotianamine transporter YSL5	O.I.	C.G.	H.G.
17.6	99.5	225.3	At3g50480	824212	HR4 (HOMOLOG OF RPW8 4)	Homolog of RPW8	O.I.	C.G.	H.G.
17.5	99.5	86.4	At3g22060	821768	receptor protein kinase-related	contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain	O.I.	C.G.	H.G.
17.3	99.5	19.6	At4g15430	827214	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
17.3	99.5	15.3	At5g04880	3770684	-	pseudogene of ABC transporter family protein	O.I.	C.G.	H.G.
16.8	99.5	38.0	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
16.7	99.5	33.0	At4g15680	827245	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
16.5	99.5	96.4	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
16.4	99.5	117.8	At1g22890	838896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.3	99.5	9.3	At4g19820	827726	glycosyl hydrolase family 18 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;MBFOVPA	O.I.	C.G.	H.G.
16.1	99.5	95.2	At1g35420	840434	dienelactone hydrolase family protein	F:hydrolase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;BFOPMA	O.I.	C.G.	H.G.
16.1	99.5	30.7	At1g49200	841343	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
15.2	99.4	22.4	At3g26230	822224	CYP71B24	putative cytochrome P450	O.I.	C.G.	H.G.
15.0	99.4	53.9	At1g19540	838541	isoflavone reductase, putative	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA	O.I.	C.G.	H.G.
14.8	99.4	54.3	At5g18140	831932	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
14.5	99.4	119.7	At4g19160	827654	unknown protein	F:unknown;P:biological_process unknown;C:unknown;BPOM	O.I.	C.G.	H.G.
14.2	99.4	46.9	At3g06080	819781	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.0	99.4	80.2	At3g51000	824264	epoxide hydrolase, putative	F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
14.0	99.4	36.1	At5g02150	831805	binding	F:binding;P:unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
13.8	99.4	50.2	At1g54740	841915	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF	O.I.	C.G.	H.G.
13.5	99.4	57.5	At1g03400	838751	2-oxoglutarate-dependent dioxygenase, putative	A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.	O.I.	C.G.	H.G.
13.4	99.4	158.6	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
13.4	99.4	139.1	At5g02840	831766	LCL1 (LHY/CCA1-like 1)	CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
13.4	99.4	13.2	At4g19510	827692	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA	O.I.	C.G.	H.G.
13.3	99.4	30.0	At3g15770	820820	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
13.2	99.4	15.4	At2g35170	818084	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF	O.I.	C.G.	H.G.
13.1	99.4	120.4	At4g37610	829915	BT5 (BTB AND TAZ DOMAIN PROTEIN 5)	BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.	O.I.	C.G.	H.G.
13.1	99.4	83.2	At4g32870	829423	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
13.0	99.4	83.1	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
13.0	99.4	20.0	At5g56860	835788	GNC (GATA, nitrate-inducible, carbon metabolism-involved)	F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB	O.I.	C.G.	H.G.
12.9	99.3	251.7	At3g13750	820584	BGAL1 (Beta galactosidase 1)	beta-galactosidase, glycosyl hydrolase family 35	O.I.	C.G.	H.G.
12.9	99.3	36.5	At3g61210	825293	embryo-abundant protein-related	F:unknown;P:unknown;C:cellular_component unknown;BPFOMA	O.I.	C.G.	H.G.
12.8	99.3	102.2	At5g53160	835397	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.8	99.3	45.7	At1g22630	838869	unknown protein	F:unknown;P:unknown;C:chloroplast;MPBO	O.I.	C.G.	H.G.
12.8	99.3	42.6	At1g05840	837094	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO	O.I.	C.G.	H.G.
12.7	99.3	190.4	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
12.7	99.3	125.1	At1g06570	837168	PDS1 (PHYTOENE DESATURATION 1)	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	O.I.	C.G.	H.G.
12.6	99.3	18.7	At1g54210	841861	ATG12A (AUTOPHAGY 12 A)	F:protein binding;P:autophagy, protein ubiquitination during ubiquitin-dependent protein catabolic process, autophagic vacuole formation;C:cytoplasm;MFPO	O.I.	C.G.	H.G.
12.4	99.3	41.5	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
12.2	99.3	42.9	At1g75100	843847	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	O.I.	C.G.	H.G.
12.1	99.3	84.1	At1g17990	838379	12-oxophytodienoate reductase, putative	F:unknown;P:unknown;C:unknown;BOFPAM	O.I.	C.G.	H.G.
12.0	99.3	81.9	At1g55000	841942	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB	O.I.	C.G.	H.G.
12.0	99.3	60.7	At1g23090	838917	AST91 (SULFATE TRANSPORTER 91)	Encodes AST91 mRNA for sulfate transporter.	O.I.	C.G.	H.G.
11.9	99.3	88.7	At1g64660	842774	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.	O.I.	C.G.	H.G.
11.8	99.3	298.4	At3g29240	822579	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;BOP	O.I.	C.G.	H.G.
11.8	99.3	148.1	At2g29670	817517	binding	F:binding;P:unknown;C:chloroplast;PBOAM	O.I.	C.G.	H.G.
11.8	99.3	50.2	At5g54610	835550	ANK (ankyrin)	Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.	O.I.	C.G.	H.G.
11.8	99.3	29.4	At1g02750	839432	zinc ion binding	F:zinc ion binding;P:response to water deprivation;C:intracellular;PM	O.I.	C.G.	H.G.
11.7	99.3	64.3	At1g10360	837575	ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
11.5	99.3	123.8	At1g70660	843403	MMZ2 (MMS ZWEI HOMOLOGE 2)	MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible.	O.I.	C.G.	H.G.
11.5	99.3	104.4	At2g45170	819125	AtATG8e	Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.	O.I.	C.G.	H.G.
11.4	99.3	221.2	At3g57520	824919	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	O.I.	C.G.	H.G.
11.4	99.3	74.8	At3g12360	820414	ITN1 (INCREASED TOLERANCE TO NACL)	Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production.	O.I.	C.G.	H.G.
11.3	99.3	132.0	At3g60420	825213	-	F:unknown;P:unknown;C:cellular_component unknown;OBFPM	O.I.	C.G.	H.G.
11.3	99.3	72.4	At3g02690	821274	integral membrane family protein	F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF	O.I.	C.G.	H.G.
11.3	99.3	61.6	At5g35330	833487	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	O.I.	C.G.	H.G.
11.3	99.3	55.2	At5g24520	832523	TTG1 (TRANSPARENT TESTA GLABRA 1)	Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.	O.I.	C.G.	H.G.
11.2	99.2	62.4	At1g10340	837573	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
11.2	99.2	37.5	At3g23760	821958	-	F:molecular_function unknown;P:biological_process unknown;C:vacuole;PMO	O.I.	C.G.	H.G.
11.1	99.2	49.9	At5g58800	835997	quinone reductase family protein	F:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMV	O.I.	C.G.	H.G.
11.0	99.2	75.3	At3g13450	820547	DIN4 (DARK INDUCIBLE 4)	branched chain alpha-keto acid dehydrogenase E1 beta	O.I.	C.G.	H.G.
11.0	99.2	50.6	At1g62960	842598	ACS10 (ACC SYNTHASE 10)	Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.	O.I.	C.G.	H.G.
10.8	99.2	398.1	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
10.8	99.2	56.6	At2g42890	818890	AML2 (ARABIDOPSIS-MEI2-LIKE 2)	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.	O.I.	C.G.	H.G.
10.8	99.2	46.6	At2g38330	818413	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPAFM	O.I.	C.G.	H.G.
10.6	99.2	191.1	At3g48360	823994	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.	O.I.	C.G.	H.G.
10.6	99.2	31.3	At3g52430	824408	PAD4 (PHYTOALEXIN DEFICIENT 4)	Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.	O.I.	C.G.	H.G.

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GSM ID	GSM77182
Assay name	00h pgm (Col-0) mutant replicate B
GSE experiment	GSE3424: Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)

Microarray experiments to specifically-expressed genes

GSM ID GSM77182 Assay name 00h pgm (Col-0) mutant replicate B GSE experiment GSE3424: Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)

GSM ID GSM77182

Assay name 00h pgm (Col-0) mutant replicate B

GSE experiment GSE3424: Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)