CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM77065

Assay name 12h Col-0 replicate B

GSE experiment GSE3416: Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
42.0 99.8 27.1 At1g31680 - - O.I. C.G. H.G.
22.0 99.6 57.5 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
21.5 99.6 35.5 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
15.1 99.4 17.0 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
14.7 99.4 34.9 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
12.8 99.3 38.0 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
12.7 99.3 66.7 At3g20810 821629 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV O.I. C.G. H.G.
12.3 99.3 41.1 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
12.2 99.3 17.4 At4g09040 826483 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBA O.I. C.G. H.G.
11.3 99.3 31.8 At5g02830 831772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
11.1 99.2 53.9 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
9.9 99.1 70.3 At5g51820 835257 PGM (PHOSPHOGLUCOMUTASE) Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts. O.I. C.G. H.G.
9.9 99.1 68.6 At3g55630 824729 ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D) F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPA O.I. C.G. H.G.
9.1 99.1 14.2 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. O.I. C.G. H.G.
8.9 99.0 57.6 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
8.8 99.0 44.2 At1g09795 837509 ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis O.I. C.G. H.G.
8.7 99.0 135.5 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
8.6 99.0 132.3 At1g73655 843700 FK506 binding / peptidyl-prolyl cis-trans isomerase F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMF O.I. C.G. H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage