CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM75518

Assay name slr-1 6h NAA replicate 1

GSE experiment GSE3350: SLR/IAA14-dependent auxin induced lateral root initiation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
305.7 100.0 296.8 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. O.I. C.G. H.G.
194.2 100.0 159.2 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
160.7 99.9 360.2 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
141.7 99.9 62.6 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
114.6 99.9 148.2 At3g08040 819995 FRD3 (FERRIC REDUCTASE DEFECTIVE 3) Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. O.I. C.G. H.G.
95.8 99.9 29.0 At4g00910 827985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOF O.I. C.G. H.G.
73.0 99.9 364.7 At2g23170 816849 GH3.3 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. O.I. C.G. H.G.
72.7 99.9 390.4 At1g21310 838728 ATEXT3 (EXTENSIN 3) Encodes extensin 3. O.I. C.G. H.G.
67.9 99.9 123.0 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. O.I. C.G. H.G.
62.9 99.8 211.4 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) O.I. C.G. H.G.
60.6 99.8 27.6 At1g60750 3767587 oxidoreductase F:oxidoreductase activity;P:oxidation reduction;C:unknown O.I. C.G. H.G.
58.9 99.8 48.8 At1g35260 840415 MLP165 (MLP-LIKE PROTEIN 165) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
58.1 99.8 130.1 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
58.1 99.8 24.3 At2g47560 819369 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
57.1 99.8 127.2 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM O.I. C.G. H.G.
56.7 99.8 84.0 At1g74760 - - O.I. C.G. H.G.
56.4 99.8 169.1 At4g33550 829494 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
54.7 99.8 84.9 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
53.6 99.8 132.8 At1g59500 842240 GH3.4 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. O.I. C.G. H.G.
52.4 99.8 229.0 At3g07720 819963 kelch repeat-containing protein F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA O.I. C.G. H.G.
52.3 99.8 116.0 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.4 99.8 20.0 At3g27650 822387 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.9 99.8 249.0 At3g09270 820083 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
48.5 99.8 361.4 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
47.9 99.8 75.1 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
46.7 99.8 30.5 At3g18400 821369 anac058 (Arabidopsis NAC domain containing protein 58) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
46.3 99.8 242.1 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. O.I. C.G. H.G.
46.0 99.8 176.4 At4g33420 829479 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBM O.I. C.G. H.G.
45.2 99.8 96.7 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
45.0 99.8 26.4 At1g52700 841703 phospholipase/carboxylesterase family protein F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA O.I. C.G. H.G.
43.4 99.8 33.4 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV O.I. C.G. H.G.
43.1 99.8 56.5 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
42.6 99.8 96.6 At5g12420 831117 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
42.1 99.8 132.2 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
42.0 99.8 146.7 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
41.6 99.8 51.2 At5g14130 831263 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
41.4 99.8 32.1 At1g34670 840371 AtMYB93 (myb domain protein 93) Member of the R2R3 factor gene family. O.I. C.G. H.G.
41.3 99.8 16.8 At4g10510 826643 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM O.I. C.G. H.G.
39.8 99.8 180.6 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
39.5 99.8 445.6 At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
38.6 99.8 279.3 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF O.I. C.G. H.G.
38.5 99.8 158.9 At5g13750 831220 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP O.I. C.G. H.G.
36.9 99.7 84.9 At4g27860 828899 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF O.I. C.G. H.G.
36.7 99.7 36.4 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
36.7 99.7 16.4 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
36.1 99.7 83.2 At2g22510 816784 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA O.I. C.G. H.G.
36.0 99.7 16.8 At2g48090 819421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
35.8 99.7 80.6 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV O.I. C.G. H.G.
35.5 99.7 170.6 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
35.4 99.7 16.1 At1g51640 841589 ATEXO70G2 (exocyst subunit EXO70 family protein G2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
34.7 99.7 32.9 At3g44550 823580 FAR5 (FATTY ACID REDUCTASE 5) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPA O.I. C.G. H.G.
34.6 99.7 31.8 At4g15500 827222 UGT84A4 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
34.0 99.7 65.1 At5g13900 831237 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
33.3 99.7 286.3 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. O.I. C.G. H.G.
33.0 99.7 109.5 At5g41040 834106 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO O.I. C.G. H.G.
33.0 99.7 40.1 At4g13195 826934 CLE44 (CLAVATA3/ESR-RELATED 44) Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770). O.I. C.G. H.G.
32.2 99.7 30.1 At4g31940 829324 CYP82C4 member of CYP82C O.I. C.G. H.G.
32.2 99.7 28.7 At2g22590 816790 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOV O.I. C.G. H.G.
31.8 99.7 20.3 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
31.0 99.7 78.2 At2g40900 818687 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BOPAM O.I. C.G. H.G.
30.8 99.7 20.6 At1g51840 841611 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
30.0 99.7 19.4 At1g55940 842045 CYP708A1 member of CYP708A O.I. C.G. H.G.
30.0 99.7 10.0 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
29.9 99.7 108.3 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
29.9 99.7 41.3 At2g36120 3768574 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. O.I. C.G. H.G.
29.8 99.7 181.6 At3g53480 824516 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
29.8 99.7 14.2 At1g53270 841761 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
29.2 99.7 39.0 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. O.I. C.G. H.G.
29.1 99.7 131.4 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
28.4 99.7 92.1 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
28.4 99.7 54.5 At3g12900 820473 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
28.1 99.7 126.7 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.1 99.7 81.3 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
27.8 99.7 67.7 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA O.I. C.G. H.G.
27.8 99.7 66.6 At1g60680 842362 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA O.I. C.G. H.G.
27.3 99.7 16.6 At3g04370 819592 PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4) Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. C.G. H.G.
26.7 99.7 9.6 At2g19200 816437 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.6 99.7 456.1 At1g09560 837482 GLP5 (GERMIN-LIKE PROTEIN 5) germin-like protein (GLP5) O.I. C.G. H.G.
26.6 99.7 94.3 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
26.5 99.7 118.0 At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
26.2 99.7 18.9 At4g22070 828296 WRKY31 member of WRKY Transcription Factor; Group II-b O.I. C.G. H.G.
25.9 99.7 42.5 At4g19230 827663 CYP707A1 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy. O.I. C.G. H.G.
25.8 99.7 51.6 At3g53510 824519 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
25.5 99.7 50.7 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. O.I. C.G. H.G.
25.4 99.6 78.8 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
25.3 99.6 145.1 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
25.2 99.6 61.1 At4g18360 827563 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA O.I. C.G. H.G.
25.1 99.6 105.1 At3g62270 825400 anion exchange family protein F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV O.I. C.G. H.G.
25.1 99.6 66.2 At3g02885 821194 GASA5 (GAST1 PROTEIN HOMOLOG 5) F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
25.0 99.6 28.3 At5g58620 835976 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVA O.I. C.G. H.G.
24.9 99.6 47.7 At4g32650 829400 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. O.I. C.G. H.G.
24.5 99.6 35.0 At3g26760 822289 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
24.4 99.6 296.2 At1g17860 838365 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO O.I. C.G. H.G.
24.3 99.6 83.1 At2g23150 816847 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. O.I. C.G. H.G.
24.1 99.6 237.3 At5g05960 830481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
24.1 99.6 39.9 At4g24140 828514 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV O.I. C.G. H.G.
24.0 99.6 76.3 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
23.9 99.6 301.9 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
23.8 99.6 289.5 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
23.8 99.6 88.4 At4g23420 828441 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
305.7	100.0	296.8	At5g56080	835707	NAS2 (NICOTIANAMINE SYNTHASE 2)	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	O.I.	C.G.	H.G.
194.2	100.0	159.2	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
160.7	99.9	360.2	At3g25190	822112	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
141.7	99.9	62.6	At5g49350	3771473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
114.6	99.9	148.2	At3g08040	819995	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.	O.I.	C.G.	H.G.
95.8	99.9	29.0	At4g00910	827985	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOF	O.I.	C.G.	H.G.
73.0	99.9	364.7	At2g23170	816849	GH3.3	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	O.I.	C.G.	H.G.
72.7	99.9	390.4	At1g21310	838728	ATEXT3 (EXTENSIN 3)	Encodes extensin 3.	O.I.	C.G.	H.G.
67.9	99.9	123.0	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	O.I.	C.G.	H.G.
62.9	99.8	211.4	At4g19690	827713	IRT1 (iron-regulated transporter 1)	Fe(II) transport protein (IRT1)	O.I.	C.G.	H.G.
60.6	99.8	27.6	At1g60750	3767587	oxidoreductase	F:oxidoreductase activity;P:oxidation reduction;C:unknown	O.I.	C.G.	H.G.
58.9	99.8	48.8	At1g35260	840415	MLP165 (MLP-LIKE PROTEIN 165)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.1	99.8	130.1	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
58.1	99.8	24.3	At2g47560	819369	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
57.1	99.8	127.2	At2g48130	819425	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM	O.I.	C.G.	H.G.
56.7	99.8	84.0	At1g74760		-	-	O.I.	C.G.	H.G.
56.4	99.8	169.1	At4g33550	829494	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
54.7	99.8	84.9	At4g36610	829813	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
53.6	99.8	132.8	At1g59500	842240	GH3.4	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	O.I.	C.G.	H.G.
52.4	99.8	229.0	At3g07720	819963	kelch repeat-containing protein	F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA	O.I.	C.G.	H.G.
52.3	99.8	116.0	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.4	99.8	20.0	At3g27650	822387	LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.9	99.8	249.0	At3g09270	820083	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
48.5	99.8	361.4	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
47.9	99.8	75.1	At1g68850	843218	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
46.7	99.8	30.5	At3g18400	821369	anac058 (Arabidopsis NAC domain containing protein 58)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
46.3	99.8	242.1	At5g04950	830377	NAS1 (NICOTIANAMINE SYNTHASE 1)	Encodes a nicotianamide synthase.	O.I.	C.G.	H.G.
46.0	99.8	176.4	At4g33420	829479	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBM	O.I.	C.G.	H.G.
45.2	99.8	96.7	At5g09520	830811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
45.0	99.8	26.4	At1g52700	841703	phospholipase/carboxylesterase family protein	F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
43.4	99.8	33.4	At5g19410	832061	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV	O.I.	C.G.	H.G.
43.1	99.8	56.5	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
42.6	99.8	96.6	At5g12420	831117	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
42.1	99.8	132.2	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
42.0	99.8	146.7	At2g37870	818363	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
41.6	99.8	51.2	At5g14130	831263	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
41.4	99.8	32.1	At1g34670	840371	AtMYB93 (myb domain protein 93)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
41.3	99.8	16.8	At4g10510	826643	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM	O.I.	C.G.	H.G.
39.8	99.8	180.6	At3g58550	825024	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
39.5	99.8	445.6	At5g09530	830812	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
38.6	99.8	279.3	At4g34131	829559	UGT73B3 (UDP-glucosyl transferase 73B3)	F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
38.5	99.8	158.9	At5g13750	831220	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP	O.I.	C.G.	H.G.
36.9	99.7	84.9	At4g27860	828899	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF	O.I.	C.G.	H.G.
36.7	99.7	36.4	At1g49960	841419	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
36.7	99.7	16.4	At1g31060	839992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
36.1	99.7	83.2	At2g22510	816784	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA	O.I.	C.G.	H.G.
36.0	99.7	16.8	At2g48090	819421	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
35.8	99.7	80.6	At5g13580	831202	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
35.5	99.7	170.6	At5g10580	830923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
35.4	99.7	16.1	At1g51640	841589	ATEXO70G2 (exocyst subunit EXO70 family protein G2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
34.7	99.7	32.9	At3g44550	823580	FAR5 (FATTY ACID REDUCTASE 5)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPA	O.I.	C.G.	H.G.
34.6	99.7	31.8	At4g15500	827222	UGT84A4	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
34.0	99.7	65.1	At5g13900	831237	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
33.3	99.7	286.3	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	O.I.	C.G.	H.G.
33.0	99.7	109.5	At5g41040	834106	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
33.0	99.7	40.1	At4g13195	826934	CLE44 (CLAVATA3/ESR-RELATED 44)	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).	O.I.	C.G.	H.G.
32.2	99.7	30.1	At4g31940	829324	CYP82C4	member of CYP82C	O.I.	C.G.	H.G.
32.2	99.7	28.7	At2g22590	816790	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOV	O.I.	C.G.	H.G.
31.8	99.7	20.3	At1g03700	839428	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
31.0	99.7	78.2	At2g40900	818687	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
30.8	99.7	20.6	At1g51840	841611	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
30.0	99.7	19.4	At1g55940	842045	CYP708A1	member of CYP708A	O.I.	C.G.	H.G.
30.0	99.7	10.0	At1g74770	843816	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
29.9	99.7	108.3	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
29.9	99.7	41.3	At2g36120	3768574	DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)	Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.	O.I.	C.G.	H.G.
29.8	99.7	181.6	At3g53480	824516	PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
29.8	99.7	14.2	At1g53270	841761	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
29.2	99.7	39.0	At2g28160	817362	FRU (FER-LIKE REGULATOR OF IRON UPTAKE)	Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.	O.I.	C.G.	H.G.
29.1	99.7	131.4	At2g23540	816886	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
28.4	99.7	92.1	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
28.4	99.7	54.5	At3g12900	820473	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
28.1	99.7	126.7	At2g29995	817550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.1	99.7	81.3	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
27.8	99.7	67.7	At5g02780	831800	In2-1 protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA	O.I.	C.G.	H.G.
27.8	99.7	66.6	At1g60680	842362	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA	O.I.	C.G.	H.G.
27.3	99.7	16.6	At3g04370	819592	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	C.G.	H.G.
26.7	99.7	9.6	At2g19200	816437	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.6	99.7	456.1	At1g09560	837482	GLP5 (GERMIN-LIKE PROTEIN 5)	germin-like protein (GLP5)	O.I.	C.G.	H.G.
26.6	99.7	94.3	At4g20390	827787	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
26.5	99.7	118.0	At5g09480	830807	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
26.2	99.7	18.9	At4g22070	828296	WRKY31	member of WRKY Transcription Factor; Group II-b	O.I.	C.G.	H.G.
25.9	99.7	42.5	At4g19230	827663	CYP707A1	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.	O.I.	C.G.	H.G.
25.8	99.7	51.6	At3g53510	824519	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
25.5	99.7	50.7	At3g58810	825050	MTPA2 (METAL TOLERANCE PROTEIN A2)	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.	O.I.	C.G.	H.G.
25.4	99.6	78.8	At1g04220	839578	KCS2 (3-KETOACYL-COA SYNTHASE 2)	Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
25.3	99.6	145.1	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
25.2	99.6	61.1	At4g18360	827563	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA	O.I.	C.G.	H.G.
25.1	99.6	105.1	At3g62270	825400	anion exchange family protein	F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV	O.I.	C.G.	H.G.
25.1	99.6	66.2	At3g02885	821194	GASA5 (GAST1 PROTEIN HOMOLOG 5)	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
25.0	99.6	28.3	At5g58620	835976	zinc finger (CCCH-type) family protein	F:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVA	O.I.	C.G.	H.G.
24.9	99.6	47.7	At4g32650	829400	ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)	A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.	O.I.	C.G.	H.G.
24.5	99.6	35.0	At3g26760	822289	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
24.4	99.6	296.2	At1g17860	838365	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO	O.I.	C.G.	H.G.
24.3	99.6	83.1	At2g23150	816847	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.	O.I.	C.G.	H.G.
24.1	99.6	237.3	At5g05960	830481	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
24.1	99.6	39.9	At4g24140	828514	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV	O.I.	C.G.	H.G.
24.0	99.6	76.3	At1g49310	841354	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.9	99.6	301.9	At3g53980	824565	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
23.8	99.6	289.5	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
23.8	99.6	88.4	At4g23420	828441	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.

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GSM ID	GSM75518
Assay name	slr-1 6h NAA replicate 1
GSE experiment	GSE3350: SLR/IAA14-dependent auxin induced lateral root initiation

Microarray experiments to specifically-expressed genes

GSM ID GSM75518 Assay name slr-1 6h NAA replicate 1 GSE experiment GSE3350: SLR/IAA14-dependent auxin induced lateral root initiation

GSM ID GSM75518

Assay name slr-1 6h NAA replicate 1

GSE experiment GSE3350: SLR/IAA14-dependent auxin induced lateral root initiation