Microarray experiments to specifically-expressed genes

GSM ID GSM75509
Assay name Col-0 2h NAA replicate 1
GSE experiment GSE3350: SLR/IAA14-dependent auxin induced lateral root initiation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
632.7100.063.9At5g06080830495LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
590.5100.098.5At2g39370818522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
445.7100.0114.9At3g58190824988LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)This gene contains two auxin-responsive element (AuxRE).O.I.C.G.H.G.
376.1100.068.8At1g607503767587oxidoreductaseF:oxidoreductase activity;P:oxidation reduction;C:unknownO.I.C.G.H.G.
316.9100.038.1At2g42440818844-F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
255.7100.0113.0At3g26760822289short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
171.2100.091.3At4g13195826934CLE44 (CLAVATA3/ESR-RELATED 44)Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).O.I.C.G.H.G.
167.2100.059.8At4g37295829884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
164.399.9232.6At1g59500842240GH3.4encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
159.999.955.1At2g14960815985GH3.1encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.O.I.C.G.H.G.
133.399.9355.3At4g27260828834WES1encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.O.I.C.G.H.G.
122.399.919.9At4g26540828760kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
121.299.9232.3At1g78100844146F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
116.399.9159.6At5g12420831117unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAFO.I.C.G.H.G.
110.299.9117.1At5g13900831237protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
107.899.9443.3At2g23170816849GH3.3encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
106.499.921.2At2g47860819398phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
105.599.925.8At2g28690817418unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
101.599.9115.7At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
100.399.969.6At2g42430818843LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).O.I.C.G.H.G.
97.599.940.1At5g26930832751zinc finger (GATA type) family proteinF:transcription factor activity, sequence-specific DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
95.099.9185.8At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.C.G.H.G.
90.199.959.7At3g25640822151unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
88.299.986.1At2g25790817121leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAVO.I.C.G.H.G.
85.899.9156.0At2g48130819425protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PBOMO.I.C.G.H.G.
85.699.932.6At3g20830821631protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOFPBVAO.I.C.G.H.G.
82.999.947.1At1g64405842749unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
77.899.955.7At1g54540841896-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
77.699.993.2At2g39110818497protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
74.699.9116.4At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVO.I.C.G.H.G.
73.999.985.2At1g141308379722-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFMO.I.C.G.H.G.
71.199.939.4At3g63440825519CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
70.199.971.0At5g05160830398leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVAO.I.C.G.H.G.
68.099.9242.6At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
67.499.8376.0At1g21310838728ATEXT3 (EXTENSIN 3)Encodes extensin 3.O.I.C.G.H.G.
66.899.8147.9At1g23800838991ALDH2B7Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.O.I.C.G.H.G.
63.999.879.6At4g17350827447phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOO.I.C.G.H.G.
62.699.8136.6At2g47890819401zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
61.599.8121.4At1g62770842576invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
61.299.8108.3At3g08040819995FRD3 (FERRIC REDUCTASE DEFECTIVE 3)Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.O.I.C.G.H.G.
57.899.8194.7At5g13750831220ZIFL1 (ZINC INDUCED FACILITATOR-like 1)F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAPO.I.C.G.H.G.
57.499.864.0At3g54950824660PLA IIIA (PATATIN-LIKE PROTEIN 6)F:unknown;P:response to other organism;C:unknown;PBOFMO.I.C.G.H.G.
57.099.827.2At1g03700839428-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
56.899.831.6At5g67430836879GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBAO.I.C.G.H.G.
56.699.8280.6At5g642508365462-nitropropane dioxygenase family / NPD familyF:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMAO.I.C.G.H.G.
56.399.8267.2At3g09270820083ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
56.299.8168.9At4g33550829494lipid bindingF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
56.299.869.7At4g13235826940EDA21 (embryo sac development arrest 21)Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
55.299.823.7At2g47560819369zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
54.999.8205.5At3g15540820793IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)IAA induced protein 19O.I.C.G.H.G.
54.899.8112.6At5g19530832073ACL5 (ACAULIS 5)Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.O.I.C.G.H.G.
53.399.888.9At3g56980824865BHLH039F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
52.699.857.6At5g14130831263peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
50.999.864.2At1g58340842203ZF14F:drug transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAMO.I.C.G.H.G.
50.799.8102.5At5g09520830811hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
50.499.832.9At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.O.I.C.G.H.G.
49.999.8107.4At4g31910829321transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBOO.I.C.G.H.G.
49.199.8158.6At2g37870818363protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
49.099.8314.8At4g34131829559UGT73B3 (UDP-glucosyl transferase 73B3)F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOFO.I.C.G.H.G.
48.799.8198.1At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
47.999.898.2At2g29490817498ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
47.799.8115.2At3g16800820933protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, cytoplasm;PMOFVO.I.C.G.H.G.
46.999.885.4At5g06300830518carboxy-lyaseF:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMAO.I.C.G.H.G.
46.899.830.8At1g19230838506respiratory burst oxidase protein E (RbohE) / NADPH oxidaseF:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOAO.I.C.G.H.G.
46.199.8130.5At2g41660818764MIZ1 (mizu-kussei 1)Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.O.I.C.G.H.G.
45.399.863.6At3g14680820696CYP72A14putative cytochrome P450O.I.C.G.H.G.
44.099.8217.1At3g28740822506CYP81D1Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.O.I.C.G.H.G.
43.399.8230.1At5g54510835539DFL1 (DWARF IN LIGHT 1)Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).O.I.C.G.H.G.
43.199.867.8At5g04770830355CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.O.I.C.G.H.G.
43.099.885.9At2g15490816041UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOFO.I.C.G.H.G.
42.899.8145.2At1g30700839950FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAO.I.C.G.H.G.
42.899.836.5At3g44550823580FAR5 (FATTY ACID REDUCTASE 5)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPAO.I.C.G.H.G.
42.899.817.8At2g01430814671ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOVO.I.C.G.H.G.
42.299.849.0At1g77280844064protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
41.999.836.7At5g58620835976zinc finger (CCCH-type) family proteinF:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVAO.I.C.G.H.G.
41.899.825.5At3g55090824675ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPVO.I.C.G.H.G.
41.599.829.6At3g06370819811NHX4 (SODIUM HYDROGEN EXCHANGER 4)member of Sodium proton exchanger familyO.I.C.G.H.G.
40.499.846.0At2g34140817975Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
40.399.8300.0At3g22620821833protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFVO.I.C.G.H.G.
40.399.850.6At3g13380820538BRL3 (BRI1-LIKE 3)Similar to BRI, brassinosteroid receptor protein.O.I.C.G.H.G.
39.599.898.3At1g04220839578KCS2 (3-KETOACYL-COA SYNTHASE 2)Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
39.399.8107.0At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVO.I.C.G.H.G.
38.499.855.7At1g60730842367aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPAO.I.C.G.H.G.
38.499.822.9At5g53290835410CRF3 (CYTOKININ RESPONSE FACTOR 3)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
38.199.8104.8At5g56080835707NAS2 (NICOTIANAMINE SYNTHASE 2)Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.O.I.C.G.H.G.
37.799.751.0At1g10380837577unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
37.599.728.6At5g04980830380endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
37.499.712.1At5g58580835972ATL63 (ARABIDOPSIS TÓF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
35.599.7118.4At4g28040828919nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMO.I.C.G.H.G.
35.499.7191.3At2g33310817894IAA13Auxin induced gene, IAA13 (IAA13).O.I.C.G.H.G.
34.999.773.8At1g59740842267proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
34.399.726.7At4g28640828982IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)Auxin induced gene, IAA11 (IAA11).O.I.C.G.H.G.
33.999.7412.8At5g09530830812hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
33.899.7118.4At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
33.699.7102.9At1g28680839768transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
33.599.720.3At1g51170841540protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MOFPBVAO.I.C.G.H.G.
32.199.794.5At4g24130828513unknown proteinF:unknown;P:biological_process unknown;C:nucleus;PO.I.C.G.H.G.
31.899.796.1At3g16340820881PDR1F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPVO.I.C.G.H.G.
31.699.78.5At5g58910836008LAC16 (laccase 16)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
30.999.7110.1At1g56320842085unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.



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