Microarray experiments to specifically-expressed genes

GSM ID GSM74905
Assay name ice1_3H Cold_Rep2
GSE experiment GSE3326: ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
140.999.983.6At3g17070820964peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
115.199.941.5At1g04110839287SDD1 (STOMATAL DENSITY AND DISTRIBUTION)Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.O.I.C.G.H.G.
108.999.9133.9At1g04800839406glycine-rich proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
100.099.9204.1At1g33811840274GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
98.299.9211.6At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.O.I.C.G.H.G.
87.799.9133.7At3g62820825457invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
78.899.947.1At2g20875816621EPF1 (EPIDERMAL PATTERNING FACTOR 1)F:molecular_function unknown;P:stomatal complex patterning;C:unknown;PO.I.C.G.H.G.
63.999.821.5At2g39690818552unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBMOO.I.C.G.H.G.
60.999.876.5At5g25840832653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
56.499.837.6At4g17970827522unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
50.599.814.8At1g26600839200CLE9 (CLAVATA3/ESR-RELATED 9)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.O.I.C.G.H.G.
48.899.817.5At5g18430831961GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
48.799.855.0At3g53720824539ATCHX20 (CATION/H+ EXCHANGER 20)member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.O.I.C.G.H.G.
40.799.834.7At4g14480827095protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
38.399.812.0At1g76190843952auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
34.299.782.9At4g38420829999sks9 (SKU5 Similar 9)F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOAO.I.C.G.H.G.
32.999.7103.7At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMO.I.C.G.H.G.
32.099.731.2At1g80080844348TMM (TOO MANY MOUTHS)Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.O.I.C.G.H.G.
31.899.742.7At2g46070819215MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.O.I.C.G.H.G.
31.299.723.4At1g79770844316unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
31.099.796.0At1g11850837732unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
29.099.723.6At1g34245840324-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.799.746.4At4g25490828653CBF1 (C-REPEAT/DRE BINDING FACTOR 1)Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.O.I.C.G.H.G.
27.499.7163.1At4g15210827185BAM5 (BETA-AMYLASE 5)cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.O.I.C.G.H.G.
25.299.632.4At1g03440839504leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
23.899.6191.9At1g22690838875gibberellin-responsive protein, putativeF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
23.899.629.6At5g04820830361OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.499.685.6At1g12845837841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.299.634.9At2g21080816643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;POO.I.C.G.H.G.
20.299.69.4At2g44570819065AtGH9B12 (Arabidopsis thaliana glycosyl hydrolase 9B12)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
19.899.627.2At3g24140822000FMA (FAMA)Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.O.I.C.G.H.G.
19.799.6165.1At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
19.499.68.0At4g26420828748GAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.O.I.C.G.H.G.
19.399.613.7At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
18.399.553.1At2g46720819284KCS13 (3-KETOACYL-COA SYNTHASE 13)Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
18.299.512.7At2g25470817085AtRLP21 (Receptor Like Protein 21)F:protein binding;P:signal transduction;C:chloroplast;PMOBFAVO.I.C.G.H.G.
17.899.594.1At3g47295823883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.999.5215.9At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
16.399.591.4At1g65500842862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.099.513.0At2g38300818410DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFO.I.C.G.H.G.
15.599.547.7At1g24530839068transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
15.599.528.5At1g08810837403MYB60 (myb domain protein 60)putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.O.I.C.G.H.G.
15.599.518.6At3g03680821190C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVAO.I.C.G.H.G.
15.399.443.4At4g22753828373SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases.O.I.C.G.H.G.
14.199.4215.7At4g12480826860pEARLI 1a putative lipid transfer protein, vernalization-responsive and cold-inducedO.I.C.G.H.G.
14.099.47.1At3g06120819785MUTE (MUTE)Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata.O.I.C.G.H.G.
12.399.363.0At4g25260828629invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;PO.I.C.G.H.G.
12.299.314.0At3g45130823649LAS1F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMAO.I.C.G.H.G.
11.999.3141.9At1g61800842477GPT2glucose6-Phosphate/phosphate transporter 2O.I.C.G.H.G.
11.799.350.8At2g16630816164proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
11.699.3132.6At2g39030818489GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
11.699.310.5At4g29610829082cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
11.199.225.8At5g53890835470leucine-rich repeat transmembrane protein kinase, putativeEncodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation.O.I.C.G.H.G.
11.199.212.7At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
10.999.231.9At1g21010838695unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
10.799.270.2At2g43520818953ATTI2Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family.O.I.C.G.H.G.
10.799.235.2At4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).O.I.C.G.H.G.
10.399.26.4At5g58580835972ATL63 (ARABIDOPSIS TÓF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
10.199.27.3At3g51760824339unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.799.149.9At2g326903768391GRP23 (GLYCINE-RICH PROTEIN 23)Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.O.I.C.G.H.G.
9.799.135.1At1g10060837542branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
9.799.134.9At3g49260824087iqd21 (IQ-domain 21)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
9.799.15.7At1g45616841101AtRLP6 (Receptor Like Protein 6)F:protein binding;P:signal transduction, defense response;C:membrane;PMOBFAVO.I.C.G.H.G.
9.699.163.7At4g18280827554glycine-rich cell wall protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
9.699.19.6At5g44390834465FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMAO.I.C.G.H.G.
9.499.150.9At4g21680828255proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
9.399.117.9At4g24480828550serine/threonine protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
9.199.158.7At3g26290822232CYP71B26putative cytochrome P450O.I.C.G.H.G.
9.199.122.8At1g05230839256HDG2 (HOMEODOMAIN GLABROUS 2)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
9.099.16.0At2g17470816253unknown proteinF:unknown;P:biological_process unknown;C:unknown;BPOFO.I.C.G.H.G.
8.999.0134.6At5g48485834904DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.O.I.C.G.H.G.
8.999.0105.9At5g04950830377NAS1 (NICOTIANAMINE SYNTHASE 1)Encodes a nicotianamide synthase.O.I.C.G.H.G.
8.999.011.0At1g21540838755AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
8.999.010.3At4g18290827555KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type.O.I.C.G.H.G.
8.799.091.2At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAO.I.C.G.H.G.



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