CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM74903

Assay name ice1_no treatment_Rep2

GSE experiment GSE3326: ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
129.3 99.9 80.1 At3g17070 820964 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
123.8 99.9 142.7 At1g04800 839406 glycine-rich protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
120.3 99.9 42.4 At1g04110 839287 SDD1 (STOMATAL DENSITY AND DISTRIBUTION) Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases. O.I. C.G. H.G.
98.6 99.9 52.7 At2g20875 816621 EPF1 (EPIDERMAL PATTERNING FACTOR 1) F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P O.I. C.G. H.G.
96.1 99.9 24.5 At5g18430 831961 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
93.1 99.9 137.8 At3g62820 825457 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
91.8 99.9 195.5 At1g33811 840274 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
78.4 99.9 23.9 At2g39690 818552 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO O.I. C.G. H.G.
73.0 99.9 42.7 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF O.I. C.G. H.G.
70.1 99.9 66.0 At3g53720 824539 ATCHX20 (CATION/H+ EXCHANGER 20) member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells. O.I. C.G. H.G.
62.8 99.8 77.7 At5g25840 832653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.5 99.8 30.9 At1g34245 840324 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.7 99.8 35.2 At4g14480 827095 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA O.I. C.G. H.G.
41.6 99.8 48.9 At2g46070 819215 MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants. O.I. C.G. H.G.
39.4 99.8 40.5 At1g03440 839504 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
37.4 99.7 190.5 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
36.8 99.7 86.1 At4g38420 829999 sks9 (SKU5 Similar 9) F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA O.I. C.G. H.G.
33.1 99.7 31.8 At1g80080 844348 TMM (TOO MANY MOUTHS) Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. O.I. C.G. H.G.
31.6 99.7 220.9 At1g22690 838875 gibberellin-responsive protein, putative F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
30.6 99.7 23.2 At1g79770 844316 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.8 99.7 94.1 At1g11850 837732 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
28.6 99.7 11.2 At1g26600 839200 CLE9 (CLAVATA3/ESR-RELATED 9) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo. O.I. C.G. H.G.
28.5 99.7 11.2 At2g44570 819065 AtGH9B12 (Arabidopsis thaliana glycosyl hydrolase 9B12) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
28.1 99.7 17.3 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF O.I. C.G. H.G.
27.0 99.7 9.4 At4g26420 828748 GAMT1 A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. O.I. C.G. H.G.
25.2 99.6 9.7 At1g76190 843952 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
22.9 99.6 37.1 At2g21080 816643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PO O.I. C.G. H.G.
22.8 99.6 90.4 At1g12845 837841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.9 99.6 10.8 At3g51760 824339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.9 99.6 103.5 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.8 99.6 101.9 At3g47295 823883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.6 99.6 9.0 At5g58580 835972 ATL63 (ARABIDOPSIS TÓ F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
19.0 99.5 13.0 At2g25470 817085 AtRLP21 (Receptor Like Protein 21) F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV O.I. C.G. H.G.
18.0 99.5 76.6 At4g02330 828064 ATPMEPCRB F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM O.I. C.G. H.G.
17.4 99.5 51.8 At2g46720 819284 KCS13 (3-KETOACYL-COA SYNTHASE 13) Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
16.7 99.5 214.8 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
16.7 99.5 29.6 At1g08810 837403 MYB60 (myb domain protein 60) putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought. O.I. C.G. H.G.
16.3 99.5 24.7 At3g24140 822000 FMA (FAMA) Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. O.I. C.G. H.G.
15.9 99.5 16.0 At3g45130 823649 LAS1 F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMA O.I. C.G. H.G.
15.2 99.4 47.3 At1g24530 839068 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPA O.I. C.G. H.G.
15.0 99.4 18.3 At3g03680 821190 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA O.I. C.G. H.G.
15.0 99.4 13.4 At4g18290 827555 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. O.I. C.G. H.G.
14.8 99.4 157.7 At1g61800 842477 GPT2 glucose6-Phosphate/phosphate transporter 2 O.I. C.G. H.G.
14.5 99.4 56.5 At2g16630 816164 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
14.2 99.4 80.7 At2g43520 818953 ATTI2 Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family. O.I. C.G. H.G.
13.9 99.4 67.0 At4g25260 828629 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P O.I. C.G. H.G.
13.1 99.4 11.3 At5g60880 836209 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
13.1 99.4 6.8 At3g06120 819785 MUTE (MUTE) Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata. O.I. C.G. H.G.
13.0 99.4 40.0 At4g22753 828373 SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. O.I. C.G. H.G.
12.4 99.3 202.1 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced O.I. C.G. H.G.
12.2 99.3 33.0 At4g39210 830076 APL3 Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. O.I. C.G. H.G.
11.9 99.3 26.7 At5g53890 835470 leucine-rich repeat transmembrane protein kinase, putative Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation. O.I. C.G. H.G.
11.4 99.3 52.7 At3g23410 821922 alcohol oxidase-related Encodes a fatty alcohol oxidase. O.I. C.G. H.G.
11.4 99.3 10.4 At5g44390 834465 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA O.I. C.G. H.G.
11.2 99.2 36.0 At4g25000 828603 AMY1 (ALPHA-AMYLASE-LIKE) Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). O.I. C.G. H.G.
11.1 99.2 53.4 At2g32690 3768391 GRP23 (GLYCINE-RICH PROTEIN 23) Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid. O.I. C.G. H.G.
10.9 99.2 38.2 At3g22550 821826 senescence-associated protein-related F:molecular_function unknown;P:response to salt stress;C:unknown;P O.I. C.G. H.G.
10.8 99.2 6.6 At2g17470 816253 unknown protein F:unknown;P:biological_process unknown;C:unknown;BPOF O.I. C.G. H.G.
10.6 99.2 126.8 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
10.6 99.2 115.8 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. O.I. C.G. H.G.
10.5 99.2 21.0 At5g19730 832093 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:cell wall, cytoplasm, plant-type cell wall;PBFM O.I. C.G. H.G.
10.3 99.2 45.2 At4g23730 828473 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOPFM O.I. C.G. H.G.
10.3 99.2 36.0 At3g49260 824087 iqd21 (IQ-domain 21) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
10.3 99.2 27.1 At3g04810 819641 ATNEK2 (NIMA-RELATED KINASE 2) Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. O.I. C.G. H.G.
10.2 99.2 18.8 At4g24480 828550 serine/threonine protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA O.I. C.G. H.G.
10.1 99.2 182.9 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM O.I. C.G. H.G.
9.9 99.1 117.3 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
9.7 99.1 43.9 At4g33950 829541 OST1 (OPEN STOMATA 1) Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network. O.I. C.G. H.G.
9.5 99.1 111.0 At4g08870 826458 arginase, putative Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment. O.I. C.G. H.G.
9.5 99.1 76.3 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
9.2 99.1 8.5 At2g40260 818618 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
9.0 99.1 135.1 At5g48485 834904 DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1) encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica. O.I. C.G. H.G.
9.0 99.1 10.0 At3g28960 822536 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPFOBAV O.I. C.G. H.G.
8.6 99.0 48.7 At4g21680 828255 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
129.3	99.9	80.1	At3g17070	820964	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
123.8	99.9	142.7	At1g04800	839406	glycine-rich protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
120.3	99.9	42.4	At1g04110	839287	SDD1 (STOMATAL DENSITY AND DISTRIBUTION)	Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.	O.I.	C.G.	H.G.
98.6	99.9	52.7	At2g20875	816621	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P	O.I.	C.G.	H.G.
96.1	99.9	24.5	At5g18430	831961	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
93.1	99.9	137.8	At3g62820	825457	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
91.8	99.9	195.5	At1g33811	840274	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
78.4	99.9	23.9	At2g39690	818552	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO	O.I.	C.G.	H.G.
73.0	99.9	42.7	At4g17970	827522	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF	O.I.	C.G.	H.G.
70.1	99.9	66.0	At3g53720	824539	ATCHX20 (CATION/H+ EXCHANGER 20)	member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.	O.I.	C.G.	H.G.
62.8	99.8	77.7	At5g25840	832653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.5	99.8	30.9	At1g34245	840324	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.7	99.8	35.2	At4g14480	827095	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA	O.I.	C.G.	H.G.
41.6	99.8	48.9	At2g46070	819215	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)	Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.	O.I.	C.G.	H.G.
39.4	99.8	40.5	At1g03440	839504	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
37.4	99.7	190.5	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
36.8	99.7	86.1	At4g38420	829999	sks9 (SKU5 Similar 9)	F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA	O.I.	C.G.	H.G.
33.1	99.7	31.8	At1g80080	844348	TMM (TOO MANY MOUTHS)	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.	O.I.	C.G.	H.G.
31.6	99.7	220.9	At1g22690	838875	gibberellin-responsive protein, putative	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
30.6	99.7	23.2	At1g79770	844316	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.8	99.7	94.1	At1g11850	837732	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
28.6	99.7	11.2	At1g26600	839200	CLE9 (CLAVATA3/ESR-RELATED 9)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.	O.I.	C.G.	H.G.
28.5	99.7	11.2	At2g44570	819065	AtGH9B12 (Arabidopsis thaliana glycosyl hydrolase 9B12)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
28.1	99.7	17.3	At2g38300	818410	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF	O.I.	C.G.	H.G.
27.0	99.7	9.4	At4g26420	828748	GAMT1	A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.	O.I.	C.G.	H.G.
25.2	99.6	9.7	At1g76190	843952	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
22.9	99.6	37.1	At2g21080	816643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;PO	O.I.	C.G.	H.G.
22.8	99.6	90.4	At1g12845	837841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.9	99.6	10.8	At3g51760	824339	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.9	99.6	103.5	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.8	99.6	101.9	At3g47295	823883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.6	99.6	9.0	At5g58580	835972	ATL63 (ARABIDOPSIS TÓ	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
19.0	99.5	13.0	At2g25470	817085	AtRLP21 (Receptor Like Protein 21)	F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV	O.I.	C.G.	H.G.
18.0	99.5	76.6	At4g02330	828064	ATPMEPCRB	F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM	O.I.	C.G.	H.G.
17.4	99.5	51.8	At2g46720	819284	KCS13 (3-KETOACYL-COA SYNTHASE 13)	Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
16.7	99.5	214.8	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
16.7	99.5	29.6	At1g08810	837403	MYB60 (myb domain protein 60)	putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.	O.I.	C.G.	H.G.
16.3	99.5	24.7	At3g24140	822000	FMA (FAMA)	Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.	O.I.	C.G.	H.G.
15.9	99.5	16.0	At3g45130	823649	LAS1	F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMA	O.I.	C.G.	H.G.
15.2	99.4	47.3	At1g24530	839068	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPA	O.I.	C.G.	H.G.
15.0	99.4	18.3	At3g03680	821190	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA	O.I.	C.G.	H.G.
15.0	99.4	13.4	At4g18290	827555	KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)	One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type.	O.I.	C.G.	H.G.
14.8	99.4	157.7	At1g61800	842477	GPT2	glucose6-Phosphate/phosphate transporter 2	O.I.	C.G.	H.G.
14.5	99.4	56.5	At2g16630	816164	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
14.2	99.4	80.7	At2g43520	818953	ATTI2	Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family.	O.I.	C.G.	H.G.
13.9	99.4	67.0	At4g25260	828629	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P	O.I.	C.G.	H.G.
13.1	99.4	11.3	At5g60880	836209	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
13.1	99.4	6.8	At3g06120	819785	MUTE (MUTE)	Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata.	O.I.	C.G.	H.G.
13.0	99.4	40.0	At4g22753	828373	SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases.	O.I.	C.G.	H.G.
12.4	99.3	202.1	At4g12480	826860	pEARLI 1	a putative lipid transfer protein, vernalization-responsive and cold-induced	O.I.	C.G.	H.G.
12.2	99.3	33.0	At4g39210	830076	APL3	Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.	O.I.	C.G.	H.G.
11.9	99.3	26.7	At5g53890	835470	leucine-rich repeat transmembrane protein kinase, putative	Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation.	O.I.	C.G.	H.G.
11.4	99.3	52.7	At3g23410	821922	alcohol oxidase-related	Encodes a fatty alcohol oxidase.	O.I.	C.G.	H.G.
11.4	99.3	10.4	At5g44390	834465	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA	O.I.	C.G.	H.G.
11.2	99.2	36.0	At4g25000	828603	AMY1 (ALPHA-AMYLASE-LIKE)	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	O.I.	C.G.	H.G.
11.1	99.2	53.4	At2g32690	3768391	GRP23 (GLYCINE-RICH PROTEIN 23)	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	O.I.	C.G.	H.G.
10.9	99.2	38.2	At3g22550	821826	senescence-associated protein-related	F:molecular_function unknown;P:response to salt stress;C:unknown;P	O.I.	C.G.	H.G.
10.8	99.2	6.6	At2g17470	816253	unknown protein	F:unknown;P:biological_process unknown;C:unknown;BPOF	O.I.	C.G.	H.G.
10.6	99.2	126.8	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
10.6	99.2	115.8	At5g04950	830377	NAS1 (NICOTIANAMINE SYNTHASE 1)	Encodes a nicotianamide synthase.	O.I.	C.G.	H.G.
10.5	99.2	21.0	At5g19730	832093	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:cell wall, cytoplasm, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
10.3	99.2	45.2	At4g23730	828473	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOPFM	O.I.	C.G.	H.G.
10.3	99.2	36.0	At3g49260	824087	iqd21 (IQ-domain 21)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
10.3	99.2	27.1	At3g04810	819641	ATNEK2 (NIMA-RELATED KINASE 2)	Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	O.I.	C.G.	H.G.
10.2	99.2	18.8	At4g24480	828550	serine/threonine protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA	O.I.	C.G.	H.G.
10.1	99.2	182.9	At2g43620	818964	chitinase, putative	F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM	O.I.	C.G.	H.G.
9.9	99.1	117.3	At4g22470	828342	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
9.7	99.1	43.9	At4g33950	829541	OST1 (OPEN STOMATA 1)	Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.	O.I.	C.G.	H.G.
9.5	99.1	111.0	At4g08870	826458	arginase, putative	Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.	O.I.	C.G.	H.G.
9.5	99.1	76.3	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
9.2	99.1	8.5	At2g40260	818618	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
9.0	99.1	135.1	At5g48485	834904	DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)	encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.	O.I.	C.G.	H.G.
9.0	99.1	10.0	At3g28960	822536	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPFOBAV	O.I.	C.G.	H.G.
8.6	99.0	48.7	At4g21680	828255	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.

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GSM ID	GSM74903
Assay name	ice1_no treatment_Rep2
GSE experiment	GSE3326: ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome

Microarray experiments to specifically-expressed genes

GSM ID GSM74903 Assay name ice1_no treatment_Rep2 GSE experiment GSE3326: ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome

GSM ID GSM74903

Assay name ice1_no treatment_Rep2

GSE experiment GSE3326: ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome