Microarray experiments to specifically-expressed genes

GSM ID GSM74902
Assay name ice1_no treatment_Rep1
GSE experiment GSE3326: ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
119.199.9114.8At1g54570841899esterase/lipase/thioesterase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOFO.I.C.G.H.G.
86.099.960.4At3g215008217041-deoxy-D-xylulose-5-phosphate synthaseEncodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.O.I.C.G.H.G.
76.499.9157.9At4g19810827725glycosyl hydrolase family 18 proteinF:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPAO.I.C.G.H.G.
74.299.992.7At4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).O.I.C.G.H.G.
69.699.9107.0At1g04800839406glycine-rich proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
64.199.8114.4At3g62820825457invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
47.399.8106.3At4g01430826685nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMFO.I.C.G.H.G.
44.099.823.9At2g44480819055BGLU17 (BETA GLUCOSIDASE 17)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
42.999.810.1At4g044103769846transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
42.599.851.3At3g48580824018xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOAO.I.C.G.H.G.
40.999.8126.3At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseO.I.C.G.H.G.
39.199.8141.5At1g65500842862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.999.8127.3At1g33811840274GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
37.799.7151.9At1g69880843324ATH8 (thioredoxin H-type 8)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
34.699.797.5At4g21680828255proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
32.699.745.0At3g53720824539ATCHX20 (CATION/H+ EXCHANGER 20)member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.O.I.C.G.H.G.
32.499.728.5At4g17970827522unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
32.399.7298.4At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
31.699.7209.2At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
31.399.7101.3At1g23800838991ALDH2B7Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.O.I.C.G.H.G.
28.999.777.3At5g46050834646PTR3 (PEPTIDE TRANSPORTER 3)Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.O.I.C.G.H.G.
26.999.780.5At4g36220829779FAH1 (FERULIC ACID 5-HYDROXYLASE 1)encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.O.I.C.G.H.G.
26.599.773.0At4g38420829999sks9 (SKU5 Similar 9)F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOAO.I.C.G.H.G.
25.899.720.3At3g45130823649LAS1F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMAO.I.C.G.H.G.
25.699.7302.4At4g12490826861protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFAO.I.C.G.H.G.
24.799.615.4At5g44390834465FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMAO.I.C.G.H.G.
24.499.6283.7At4g12480826860pEARLI 1a putative lipid transfer protein, vernalization-responsive and cold-inducedO.I.C.G.H.G.
23.599.647.5At5g25840832653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.499.612.0At2g37740818351ZFP10 (ZINC-FINGER PROTEIN 10)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOFO.I.C.G.H.G.
22.999.638.8At3g15650820808phospholipase/carboxylesterase family proteinF:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPAO.I.C.G.H.G.
22.299.6185.1At1g22690838875gibberellin-responsive protein, putativeF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
21.999.690.0At5g65640836690bHLH093 (beta HLH protein 93)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
21.399.6268.4At4g16260827320catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;POO.I.C.G.H.G.
20.699.655.3At4g18360827563(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPAO.I.C.G.H.G.
20.099.6185.2At2g26740817215ATSEH (Arabidopsis thaliana soluble epoxide hydrolase)Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.O.I.C.G.H.G.
19.799.690.1At1g17020838272SRG1 (SENESCENCE-RELATED GENE 1)Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.O.I.C.G.H.G.
19.399.650.9At3g22550821826senescence-associated protein-relatedF:molecular_function unknown;P:response to salt stress;C:unknown;PO.I.C.G.H.G.
19.199.610.9At5g18430831961GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
18.499.577.5At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMO.I.C.G.H.G.
18.099.513.4At2g32660817826AtRLP22 (Receptor Like Protein 22)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
17.999.556.0At2g18950816412HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.O.I.C.G.H.G.
17.699.533.4At1g04990839351zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
17.599.550.6At1g24530839068transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
16.499.529.5At3g14360820657lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;FOPBMO.I.C.G.H.G.
16.399.568.1At3g04520819608THA2 (Threonine Aldolase 2)Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant.O.I.C.G.H.G.
15.899.591.3At5g47880834839ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1)Encodes a eukaryotic release factor 1 homolog. Cosuppression of the gene's expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial cell division. Expression of the protein is primarily observed in the vascular system and in actively growing and elongating zones.O.I.C.G.H.G.
15.699.5153.6At2g39030818489GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
15.499.551.4At3g30180822709BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.O.I.C.G.H.G.
15.299.4395.3At3g04720819632PR4 (PATHOGENESIS-RELATED 4)Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.O.I.C.G.H.G.
14.999.4114.3At2g37760818353aldo/keto reductase family proteinF:oxidoreductase activity;P:response to cadmium ion;C:unknown;BOMFPAO.I.C.G.H.G.
14.899.4158.1At1g61800842477GPT2glucose6-Phosphate/phosphate transporter 2O.I.C.G.H.G.
14.799.430.4At3g59140825083ATMRP14member of MRP subfamilyO.I.C.G.H.G.
14.799.427.0At3g17070820964peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
14.599.4106.7At3g51860824349CAX3 (CATION EXCHANGER 3)F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAMO.I.C.G.H.G.
14.499.457.4At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
14.299.444.1At5g36220833619CYP81D1 (CYTOCHROME P450 81D1)member of CYP81DO.I.C.G.H.G.
14.199.470.0At5g46180834660delta-OATornithine delta-aminotransferaseO.I.C.G.H.G.
14.199.433.7At1g60730842367aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPAO.I.C.G.H.G.
14.099.468.3At3g44320823557NIT3 (NITRILASE 3)This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.O.I.C.G.H.G.
14.099.418.2At2g40435818637-F:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
13.999.479.0At5g21105832235L-ascorbate oxidase/ copper ion binding / oxidoreductaseF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:cell wall;BFPMOAO.I.C.G.H.G.
13.799.471.0At5g17860831654CAX7 (calcium exchanger 7)F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPAO.I.C.G.H.G.
13.499.464.4At5g52450835321MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAMO.I.C.G.H.G.
13.499.458.7At2g04160814953AIR3isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.O.I.C.G.H.G.
13.399.4169.6At5g66760836809SDH1-1One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.O.I.C.G.H.G.
13.399.462.3At5g62530836373ALDH12A1Encodes mitochondrial Delta-pyrroline-5- carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in protection from proline toxicity. Induced at pathogen infection sites. P5CDH and SRO5 (an overlapping gene in the sense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.O.I.C.G.H.G.
13.399.448.4At5g61520836273hexose transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.C.G.H.G.
13.299.492.3At1g49670841391NQRmolecular function has not been defined. Was shown involved in oxidative stress tolerance.O.I.C.G.H.G.
13.199.4291.4At4g11650826770ATOSM34 (osmotin 34)osmotin-like proteinO.I.C.G.H.G.
13.199.412.6At5g25820832651exostosin family proteinF:catalytic activity;P:unknown;C:membrane;OMPBFVAO.I.C.G.H.G.
12.899.322.5At3g21790821733UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
12.499.3120.4At1g62290842526aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPBO.I.C.G.H.G.
12.399.3106.2At4g37520829907peroxidase 50 (PER50) (P50) (PRXR2)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOMO.I.C.G.H.G.
12.199.3365.0At1g73260843660trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;POO.I.C.G.H.G.
11.899.355.0At2g326903768391GRP23 (GLYCINE-RICH PROTEIN 23)Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.O.I.C.G.H.G.
11.799.359.5At1g27980839691DPL1F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity;P:amino acid metabolic process, sphingolipid catabolic process;C:endoplasmic reticulum, membrane;BOFMPAVO.I.C.G.H.G.
11.799.322.1At1g03440839504leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
11.699.360.1At1g10585837600transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
11.599.358.6At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBO.I.C.G.H.G.
11.499.371.7At3g51430824306YLS2strictosidine synthase-like proteinO.I.C.G.H.G.
11.199.2318.9At5g14780831330FDH (FORMATE DEHYDROGENASE)Encodes a NAD-dependent formate dehydrogenase.O.I.C.G.H.G.
11.199.2108.7At2g30140817566UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
11.199.280.3At3g03640821201BGLU25 (BETA GLUCOSIDASE 25)Encodes beta-glucosidase (GLUC).O.I.C.G.H.G.
10.999.248.4At2g37770818354aldo/keto reductase family proteinF:oxidoreductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
10.999.214.4At4g09420826524disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOO.I.C.G.H.G.
10.899.258.6At1g55265841971unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PBOO.I.C.G.H.G.
10.799.252.0At5g33290833302XGD1 (XYLOGALACTURONAN DEFICIENT 1)Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.O.I.C.G.H.G.
10.699.281.0At1g76930844028ATEXT4 (EXTENSIN 4)Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.O.I.C.G.H.G.
10.599.248.6At2g43350818936ATGPX3 (GLUTATHIONE PEROXIDASE 3)Glutathione peroxidase. Functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Interacts with ABI2 and ABI1.O.I.C.G.H.G.
10.499.2232.6At5g14920831344gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVAO.I.C.G.H.G.
10.399.2183.7At2g26020817143PDF1.2b (plant defensin 1.2b)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
10.399.2109.5At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVO.I.C.G.H.G.
10.399.2100.1At4g15210827185BAM5 (BETA-AMYLASE 5)cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.O.I.C.G.H.G.
10.399.268.8At5g08380830736AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process, metabolic process, lactose catabolic process;C:apoplast, cell wall, plant-type cell wall;MBFOPAO.I.C.G.H.G.
10.399.255.8At2g41230818722unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
10.399.212.1At5g67310836866CYP81G1member of CYP81GO.I.C.G.H.G.
10.299.2115.4At4g18930827628cyclic phosphodiesteraseF:cyclic-nucleotide phosphodiesterase activity;P:tRNA splicing, via endonucleolytic cleavage and ligation;C:cytoplasm;POBFAO.I.C.G.H.G.
10.199.270.7At2g40940818693ERS1 (ETHYLENE RESPONSE SENSOR 1)Ethylene receptor, subfamily 1. Has histidine kinase activity.O.I.C.G.H.G.
10.199.237.5At3g14060820620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cell wall, cytoplasm;PO.I.C.G.H.G.
10.199.226.1At3g60160825186ATMRP9member of MRP subfamilyO.I.C.G.H.G.



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