Microarray experiments to specifically-expressed genes

GSM ID GSM74899
Assay name Wildtype_6H Cold_Rep2
GSE experiment GSE3326: ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
163.999.9273.3At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.O.I.C.G.H.G.
111.599.993.0At4g25490828653CBF1 (C-REPEAT/DRE BINDING FACTOR 1)Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.O.I.C.G.H.G.
90.699.991.0At3g05800819749transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PO.I.C.G.H.G.
85.599.9164.6At4g25480828652DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.O.I.C.G.H.G.
78.099.925.3At1g09950837529transcription factor-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
70.799.919.6At5g51990835274CBF4 (C- REPEAT-BINDING FACTOR 4)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature.O.I.C.G.H.G.
62.199.8121.8At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.
52.399.885.2At1g70420843378unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
43.999.8164.0At4g36010829757pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
43.999.835.8At5g54470835535zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFMO.I.C.G.H.G.
43.499.830.3At2g34090817970MEE18 (maternal effect embryo arrest 18)F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;BOFPVO.I.C.G.H.G.
41.399.866.0At4g33980829544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
41.199.8105.1At5g24470832518APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.O.I.C.G.H.G.
37.499.768.7At5g50450835113zinc finger (MYND type) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMOO.I.C.G.H.G.
37.099.7254.0At5g62360836357invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
35.599.718.4At4g29610829082cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
35.399.794.4At1g68500843179unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
34.899.7182.3At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAO.I.C.G.H.G.
34.699.721.9At1g78440844180ATGA2OX1 (gibberellin 2-oxidase 1)Encodes a gibberellin 2-oxidase.O.I.C.G.H.G.
34.299.798.7At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFO.I.C.G.H.G.
31.699.7115.6At4g18280827554glycine-rich cell wall protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
26.599.7103.0At5g47060834752senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
23.999.631.8At2g17660816273nitrate-responsive NOI protein, putativeF:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;POO.I.C.G.H.G.
23.599.657.4At5g10750830942unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
23.599.656.2At1g49720841395ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.O.I.C.G.H.G.
22.899.682.6At1g22570838863proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
22.899.614.5At5g15240831376amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:response to salt stress, amino acid transport;C:membrane;MFPOBVAO.I.C.G.H.G.
22.699.6102.4At1g78600844196LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)F:transcription factor activity, zinc ion binding;P:chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription;C:nuclear speck;POMO.I.C.G.H.G.
21.899.636.3At5g48250834878zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POMO.I.C.G.H.G.
21.299.646.5At1g20030838592pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
18.299.5256.7At3g17800821048-mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stemO.I.C.G.H.G.
18.299.556.3At5g46710834714zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
18.199.514.7At3g60930825264transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
18.099.584.9At1g61340842428F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.699.570.8At5g62520836372SRO5 (SIMILAR TO RCD ONE 5)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.O.I.C.G.H.G.
17.399.548.3At3g24520822047AT-HSFC1member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
17.299.544.7At1g49230841346zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
16.799.515.7At3g62690825443ATL5 (ATL5)Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.O.I.C.G.H.G.
16.699.5112.7At1g73480843683hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
16.699.543.0At1g71710843501inositol polyphosphate 5-phosphatase, putativeF:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOVO.I.C.G.H.G.
16.199.521.6At3g54000824567-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.799.599.8At1g74450843786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
15.799.525.4At1g19370838520unknown proteinF:unknown;P:unknown;C:endoplasmic reticulum;POO.I.C.G.H.G.
14.999.484.1At5g45340834570CYP707A3Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).O.I.C.G.H.G.
14.599.444.4At4g19960827740potassium ion transmembrane transporterF:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAVO.I.C.G.H.G.
14.199.4100.4At1g76650843998calcium-binding EF hand family proteinF:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOBO.I.C.G.H.G.
13.999.4109.8At3g48520824011CYP94B3member of CYP94BO.I.C.G.H.G.
13.999.438.8At2g35290818096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
13.599.444.2At4g33920829536protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBVO.I.C.G.H.G.
13.499.439.1At3g02250821223unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.399.450.3At4g30350829158heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
13.399.419.3At4g01130828207acetylesterase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
13.199.4271.2At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
13.199.444.8At1g53035841737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.099.4108.8At3g59350825104serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
13.099.424.5At3g11020820273DREB2B (DRE/CRT-BINDING PROTEIN 2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A.O.I.C.G.H.G.
12.899.354.2At4g17615827481CBL1 (CALCINEURIN B-LIKE PROTEIN 1)Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.O.I.C.G.H.G.
12.799.3172.0At4g29190829040zinc finger (CCCH-type) family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFO.I.C.G.H.G.
11.999.326.5At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVO.I.C.G.H.G.
11.699.39.1At1g49220841345zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
11.699.37.6At5g41140834116unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
11.599.352.1At1g64890842797integral membrane transporter family proteinF:transporter activity;P:transport;C:membrane;BOPMAFO.I.C.G.H.G.
11.499.329.3At2g35650818134ATCSLA07 (CELLULOSE SYNTHASE LIKE)a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.O.I.C.G.H.G.
10.799.259.0At1g75860843919unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
10.599.244.7At2g23340816866AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
10.499.225.6At2g22190816753catalytic/ trehalose-phosphataseF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFAO.I.C.G.H.G.
10.399.228.8At2g46670819279pseudo-response regulator, putative / timing of CAB expression 1-like protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
10.199.2124.6At5g60680836189unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
10.099.227.3At1g70090843345LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
9.999.184.7At1g13260837886RAV1Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.O.I.C.G.H.G.
9.799.125.0At4g18270827553ATTRANS11Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development.O.I.C.G.H.G.
9.699.163.7At2g27260817268-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PAMOO.I.C.G.H.G.
9.499.193.7At1g18740838456unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PAO.I.C.G.H.G.
9.299.122.2At1g11960837748-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOBO.I.C.G.H.G.
9.099.156.7At1g12845837841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
8.999.0221.8At2g31360817694ADS2 (16:0Delta9 Arabidopsis desaturase 2)homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.O.I.C.G.H.G.
8.699.041.0At3g50260824188CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
8.699.040.0At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.



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