Microarray experiments to specifically-expressed genes

GSM ID GSM67078
Assay name Arabidopsis_Ovary01
GSE experiment GSE3056: Arabidopsis Pollination Study

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
308.3100.0128.1At1g30795839961hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVO.I.C.G.H.G.
238.2100.0116.9At3g26140822214glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BFPOAO.I.C.G.H.G.
182.8100.037.0At5g42955834308unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
146.299.956.9At5g23960832461TPS21 (TERPENE SYNTHASE 21)Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.O.I.C.G.H.G.
135.499.938.7At3g56610824828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
123.699.981.3At4g21480828233carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
116.699.977.0At1g03170839563unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
116.199.934.3At4g12530826865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
115.199.925.0At5g20330832155BETAG4F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POO.I.C.G.H.G.
108.899.967.9At4g19240827664unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
104.899.9132.3At2g39060818492nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
104.099.929.8At1g45190841087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
103.899.9150.4At2g34870818052MEE26 (maternal effect embryo arrest 26)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBAO.I.C.G.H.G.
94.999.9153.8At1g72290843561trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
93.599.992.5At1g25330839117basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
83.199.982.2At1g28710839771unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
74.599.919.3At5g22970832361unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
69.999.925.1At5g42230834228scpl41 (serine carboxypeptidase-like 41)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
65.599.867.9At5g07280830619EMS1 (EXCESS MICROSPOROCYTES1)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiationO.I.C.G.H.G.
65.299.842.4At5g02190831845PCS1 (PROMOTION OF CELL SURVIVAL 1)encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.O.I.C.G.H.G.
61.399.818.9At2g21655816704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
58.699.811.0At3g45940823737alpha-xylosidase, putativeF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BMFOPAVO.I.C.G.H.G.
55.499.893.6At5g37300833704WSD1Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.O.I.C.G.H.G.
55.199.855.4At1g06520837163GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.O.I.C.G.H.G.
54.999.821.8At5g45910834631GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOMO.I.C.G.H.G.
54.899.8127.8At5g44630834491terpene synthase/cyclase family proteinEncodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.O.I.C.G.H.G.
52.699.833.9At3g50280824190transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.C.G.H.G.
51.799.837.1At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.O.I.C.G.H.G.
50.799.8176.3At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAO.I.C.G.H.G.
50.199.823.3At4g36770829830UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
46.499.853.5At2g12480815721serine carboxypeptidase S10 family proteinF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
45.499.8155.5At5g59120836030ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
44.199.8186.4At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
43.499.876.7At5g21150832241PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
42.099.850.3At5g19880832110peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to ethylene stimulus, response to oxidative stress, response to virus, N-terminal protein myristoylation;C:endomembrane system;PFOMO.I.C.G.H.G.
40.999.8116.6At5g44620834490CYP706A3member of CYP706AO.I.C.G.H.G.
40.599.878.6At1g65450842857transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
40.199.8116.3At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
39.499.826.3At1g65445842856transferase-relatedF:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
38.599.822.1At1g52970841730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.199.859.6At1g51460841571ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
37.999.831.2At4g39480830103CYP96A9 (CYTOCHROME P450 96 A9)member of CYP96AO.I.C.G.H.G.
37.799.7131.5At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoO.I.C.G.H.G.
37.799.725.3At3g14395820661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.699.764.8At3g59845825154NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPAO.I.C.G.H.G.
36.099.7214.5At5g24420832513glucosamine/galactosamine-6-phosphate isomerase-relatedF:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
34.899.7129.6At1g44970841062peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
34.799.740.6At3g25810822173myrcene/ocimene synthase, putativeF:in 7 functions;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
33.899.758.7At1g12330837787unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PFOMO.I.C.G.H.G.
33.199.718.4At1g26795839221self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
33.099.720.2At1g51170841540protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MOFPBVAO.I.C.G.H.G.
32.999.788.4At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesO.I.C.G.H.G.
32.499.782.4At1g034953766646transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
32.399.761.7At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.O.I.C.G.H.G.
31.499.725.5At1g75580843893auxin-responsive protein, putativeF:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
30.899.725.4At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
30.499.732.5At1g27360839625squamosa promoter-binding protein-like 11 (SPL11)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
30.199.7105.4At3g20520821598SVL3 (SHV3-LIKE 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMO.I.C.G.H.G.
30.199.715.3At4g18540827586unknown proteinF:unknown;P:biological_process unknown;C:unknown;FPBMO.I.C.G.H.G.
29.999.727.1At2g20595816583unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
29.799.786.9At4g14090827046UDP-glucoronosyl/UDP-glucosyl transferase family proteinThe At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.O.I.C.G.H.G.
29.699.7335.6At1g72260843558THI2.1 (THIONIN 2.1)Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
29.599.760.1At1g66350842953RGL1 (RGA-LIKE 1)Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.O.I.C.G.H.G.
29.599.721.1At5g58782835993dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
29.399.739.1At1g27370839626squamosa promoter-binding protein-like 10 (SPL10)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
29.299.772.5At1g78780844214pathogenesis-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFMO.I.C.G.H.G.
29.299.760.2At4g21590828245ENDO3 (endonuclease 3)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.O.I.C.G.H.G.
29.199.769.7At2g36190818191AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAO.I.C.G.H.G.
29.199.717.7At5g43510834371--O.I.C.G.H.G.
29.199.78.5At2g30650817615catalyticF:catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
28.899.745.1At1g56210842074copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
28.799.742.8At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
28.599.736.4At1g61670842464-F:molecular_function unknown;P:unknown;C:endomembrane system, integral to membrane;MFPOBO.I.C.G.H.G.
28.099.771.5At3g55110824677ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.C.G.H.G.
27.699.763.1At5g37020833672ARF8 (AUXIN RESPONSE FACTOR 8)Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.O.I.C.G.H.G.
26.699.79.1At1g47470841154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.599.733.4At4g16447827342unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.199.7119.8At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.O.I.C.G.H.G.
26.199.777.5At3g06450819821anion exchange family proteinF:anion exchanger activity;P:anion transport;C:plasma membrane;MFPOBVO.I.C.G.H.G.
26.199.744.9At2g27880817334AGO5 (ARGONAUTE 5)F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
26.199.712.0At3g10560820221UNE9 (UNFERTILIZED EMBRYO SAC 9)member of CYP77AO.I.C.G.H.G.
26.099.714.4At5g12270831102oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
25.999.787.6At5g66590836791allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
25.799.737.7At3g60900825261FLA10F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVAO.I.C.G.H.G.
25.399.641.7At4g36380829790ROT3 (ROTUNDIFOLIA 3)Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).O.I.C.G.H.G.
25.299.650.4At5g16440831505IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.O.I.C.G.H.G.
24.999.624.2At1g75300843867isoflavone reductase, putativeencodes a protein whose sequence is similar to an isoflavone reductaseO.I.C.G.H.G.
24.899.646.1At1g23010838909LPR1 (Low Phosphate Root1)Encodes a protein with multicopper oxidase activity.O.I.C.G.H.G.
24.699.612.1At1g69100843242aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPBO.I.C.G.H.G.
24.699.611.5At3g04540819610-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
24.599.640.7At3g60160825186ATMRP9member of MRP subfamilyO.I.C.G.H.G.
24.399.680.6At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.O.I.C.G.H.G.
23.899.617.3At4g00870827990basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
22.699.666.5At1g30330839913ARF6 (AUXIN RESPONSE FACTOR 6)Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.O.I.C.G.H.G.
22.399.6313.6At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
22.199.654.0At3g14380820659integral membrane family proteinF:unknown;P:unknown;C:membrane;PO.I.C.G.H.G.
22.099.651.1At3g12000820374S-locus related protein SLR1, putative (S1)F:sugar binding;P:recognition of pollen;C:endomembrane system;POO.I.C.G.H.G.
22.099.69.6At5g55330835626membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedF:acyltransferase activity;P:biological_process unknown;C:thylakoid;BPOFO.I.C.G.H.G.
21.999.615.9At1g62870842588unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
21.599.631.2At4g14695827120unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;MFPOO.I.C.G.H.G.



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