Microarray experiments to specifically-expressed genes

GSM ID GSM62704
Assay name arf6 arf8 flowers_stage 13-14
GSE experiment GSE2848: Auxin Response Factor mediated flower gene expression

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
878.4100.092.2At1g16950838266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
416.2100.049.3At2g21655816704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
293.2100.049.9At4g36740829827ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
196.0100.089.0At2g18550816370HB-2 (HOMEOBOX-2)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
166.7100.037.7At1g45190841087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
139.799.920.8At1g47470841154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
139.199.939.2At3g56610824828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
124.499.916.2At3g57840824953self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
111.099.934.6At5g43510834371--O.I.C.G.H.G.
88.399.947.2At1g67640843088lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity, amine transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAO.I.C.G.H.G.
75.699.926.1At4g35690829721unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFBO.I.C.G.H.G.
73.199.9166.5At4g14930827151acid phosphatase survival protein SurE, putativeF:hydrolase activity, acid phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOAFPO.I.C.G.H.G.
72.199.925.0At5g45910834631GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOMO.I.C.G.H.G.
64.999.858.5At5g39660833962CDF2 (CYCLING DOF FACTOR 2)Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.O.I.C.G.H.G.
62.099.811.4At1g13230837883leucine-rich repeat family proteinEncodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis.O.I.C.G.H.G.
60.999.856.7At1g28570839757GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
56.399.8103.2At1g53160841749SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
53.099.842.3At4g24050828505short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
52.699.841.5At5g34883833426unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
50.499.846.0At4g16447827342unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
44.599.826.0At5g58782835993dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
43.299.8152.7At1g69490843282NAP (NAC-like, activated by AP3/PI)Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.O.I.C.G.H.G.
42.499.838.3At2g36080818181DNA-binding protein, putativeEncodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.O.I.C.G.H.G.
41.699.846.0At5g51810835256GA20OX2 (GIBBERELLIN 20 OXIDASE 2)Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.O.I.C.G.H.G.
39.599.8128.1At1g80160844356lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPOO.I.C.G.H.G.
39.299.836.0At5g57520835856ZFP2 (ZINC FINGER PROTEIN 2)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
39.199.822.2At1g52970841730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.799.817.9At5g06170830504ATSUC9 (Sucrose-proton symporter 9)sucrose symporter with hight affinity for sucrose (K0.5=0.066 +/- 0.025mM), that can also transport a wide range of glucosides.O.I.C.G.H.G.
38.499.88.1At1g31040839990unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
37.999.8141.9At2g41250818724haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPFO.I.C.G.H.G.
37.799.750.4At3g05400819704sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
36.899.712.2At2g35950818168EDA12 (embryo sac development arrest 12)F:molecular_function unknown;P:megagametogenesis;C:unknown;PO.I.C.G.H.G.
36.199.765.2At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.O.I.C.G.H.G.
35.299.7122.7At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
34.499.797.1At1g19330838515unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
34.399.7143.7At3g12320820411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
32.399.720.2At4g00870827990basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
31.599.772.2At2g39510818536nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
31.299.712.5At5g22970832361unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
30.499.785.9At1g21410838740SKP2AAtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.O.I.C.G.H.G.
30.499.737.5At1g75450843881CKX5 (CYTOKININ OXIDASE 5)This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
30.299.765.0At1g30040839883ATGA2OX2 (GIBBERELLIN 2-OXIDASE)Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.O.I.C.G.H.G.
30.299.728.3At2g47190819332MYB2 (MYB DOMAIN PROTEIN 2)Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.O.I.C.G.H.G.
29.199.7115.5At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoO.I.C.G.H.G.
29.099.722.7At5g01880831691zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
28.899.767.2At4g16690827371MES16 (METHYL ESTERASE 16)Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.O.I.C.G.H.G.
27.899.754.5At2g28305817376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
27.699.766.5At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
26.799.775.3At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
26.499.7139.2At1g21460838744nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
26.299.724.6At4g04630825795unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.199.715.9At1g19510838537ATRL5 (ARABIDOPSIS RAD-LIKE 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
25.799.761.6At1g59700842261ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
25.699.78.0At4g07515826202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
25.499.6102.9At5g53970835480aminotransferase, putativeencodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatmentO.I.C.G.H.G.
25.299.6167.6At5g57655835871xylose isomerase family proteinF:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMFO.I.C.G.H.G.
25.299.658.5At5g21150832241PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
25.199.669.4At4g24120828512YSL1 (YELLOW STRIPE LIKE 1)Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).O.I.C.G.H.G.
24.999.699.2At4g28040828919nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMO.I.C.G.H.G.
24.399.631.8At3g24450822035copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:endomembrane system;POMO.I.C.G.H.G.
23.799.612.9At1g66220842937subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFMO.I.C.G.H.G.
23.499.653.6At3g21420821696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
23.099.636.6At4g18210827546ATPUP10Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
22.299.6134.0At1g68440843173unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.C.G.H.G.
22.299.698.1At3g61890825362ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems.O.I.C.G.H.G.
22.299.649.4At2g12290815700-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.639.8At1g69570843293Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
21.699.674.9At5g50790835151nodulin MtN3 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
21.499.662.0At2g33480817913ANAC041 (Arabidopsis NAC domain containing protein 41)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFO.I.C.G.H.G.
21.399.642.3At1g11190837660BFN1 (BIFUNCTIONAL NUCLEASE I)Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).O.I.C.G.H.G.
21.399.628.7At1g16705838241p300/CBP acetyltransferase-related protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.399.627.3At3g57510824918ADPG1Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding.O.I.C.G.H.G.
20.799.6166.0At3g60140825184DIN2 (DARK INDUCIBLE 2)Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
20.799.658.9At1g76410843974ATL8F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
20.399.6278.1At1g72260843558THI2.1 (THIONIN 2.1)Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
20.199.624.3At3g21600821714senescence/dehydration-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PMFO.I.C.G.H.G.
19.999.651.8At2g26170817157CYP711A1Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3'H, FLS, DFR, ANS, UFGT, RT, AAC and GST).O.I.C.G.H.G.
19.999.634.3At5g10930830960CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)Encodes CBL-interacting protein kinase 5 (CIPK5).O.I.C.G.H.G.
19.899.6123.2At3g03470821250CYP89A9member of CYP89AO.I.C.G.H.G.
19.899.655.6At5g17300831595myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVBO.I.C.G.H.G.
19.799.69.2At2g32790817840ubiquitin-conjugating enzyme, putativeF:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPVO.I.C.G.H.G.
19.699.661.1At4g16130827299ARA1 (ARABINOSE KINASE)Similar to galactokinase.O.I.C.G.H.G.
19.599.613.0At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFO.I.C.G.H.G.
19.499.6140.1At2g02710814800PLPB (PAS/LOV PROTEIN B)Encodes a putative blue light receptor protein.O.I.C.G.H.G.
19.499.6123.3At3g51860824349CAX3 (CATION EXCHANGER 3)F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAMO.I.C.G.H.G.
19.399.6110.3At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsO.I.C.G.H.G.
19.299.687.6At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
19.199.627.2At4g16110827297ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2)Encodes a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Acts in concert with other type-B ARRs in the cytokinin signaling pathway. AHK3 mediates cytokinin-induced phosphorylation of ARR2 on the Asp-80 residue. This phosphorylation plays a positive role of ARR2 in cytokinin-mediated control of leaf longevity.O.I.C.G.H.G.
18.599.5132.4At4g27260828834WES1encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.O.I.C.G.H.G.
18.599.529.8At1g31820840072amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPAO.I.C.G.H.G.
18.499.5107.2At2g33810817948SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
18.199.574.7At1g23090838917AST91 (SULFATE TRANSPORTER 91)Encodes AST91 mRNA for sulfate transporter.O.I.C.G.H.G.
18.199.522.0At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.O.I.C.G.H.G.
18.199.54.2At5g64720836593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.799.569.0At4g24040828504TRE1 (TREHALASE 1)Encodes a trehalase, member of Glycoside Hydrolase Family 37.O.I.C.G.H.G.
17.299.597.1At3g04070819562anac047 (Arabidopsis NAC domain containing protein 47)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
17.299.567.3At2g31945817753unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.299.516.4At1g79900844329BAC2encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosolO.I.C.G.H.G.
17.199.558.9At2g03240814853-F:unknown;P:unknown;C:integral to membrane;MFPOO.I.C.G.H.G.
17.199.528.6At1g11080837649scpl31 (serine carboxypeptidase-like 31)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.



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