Microarray experiments to specifically-expressed genes

GSM ID GSM62696
Assay name Columbia flowers_stage 13-14
GSE experiment GSE2848: Auxin Response Factor mediated flower gene expression

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
248.2100.050.2At4g12530826865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
243.1100.0150.7At1g66120842926acyl-activating enzyme 11 (AAE11)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
203.1100.049.2At1g70270843363ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
162.599.919.7At1g29490839826auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
111.199.953.3At4g39480830103CYP96A9 (CYTOCHROME P450 96 A9)member of CYP96AO.I.C.G.H.G.
110.999.9160.2At3g53300824497CYP71B31putative cytochrome P450O.I.C.G.H.G.
110.199.9183.5At2g24210816955TPS10 (terpene synthase 10)F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;POO.I.C.G.H.G.
105.899.9132.9At2g39060818492nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
104.399.991.3At3g01530821113AtMYB57 (myb domain protein 57)Member of the R2R3 factor gene family.O.I.C.G.H.G.
102.599.9109.2At3g27810822401ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21)Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.O.I.C.G.H.G.
98.899.9147.3At2g45580819166CYP76C3member of CYP76CO.I.C.G.H.G.
96.599.9111.6At2g47270819340transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
91.799.988.0At1g29500839827auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;PO.I.C.G.H.G.
90.999.9118.1At3g55290824695short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAVO.I.C.G.H.G.
90.999.947.3At1g51440841569lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMVO.I.C.G.H.G.
88.599.931.1At5g38130833793transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:unknown;PFO.I.C.G.H.G.
88.099.968.4At1g30795839961hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVO.I.C.G.H.G.
87.399.971.5At1g70720843409invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
84.699.9223.0At1g35310840420MLP168 (MLP-LIKE PROTEIN 168)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
81.399.9215.6At5g45890834629SAG12 (SENESCENCE-ASSOCIATED GENE 12)Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.O.I.C.G.H.G.
79.599.9111.9At4g18425827573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
78.299.9140.9At3g14560820682unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
74.899.9102.0At1g35170840404-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOFO.I.C.G.H.G.
71.599.9101.4At1g29510839828SAUR68 (SMALL AUXIN UPREGULATED 68)F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
69.399.918.4At4g18980827634unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
68.799.954.0At5g42680834277unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
65.999.818.5At2g17845816294short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
65.799.8269.5At5g45950834635GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
65.499.8127.3At1g61680842465TPS14 (TERPENE SYNTHASE 14)F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
62.099.855.4At1g35290840418thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPAO.I.C.G.H.G.
60.199.871.2At1g02470837812-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
58.999.8113.4At2g34870818052MEE26 (maternal effect embryo arrest 26)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBAO.I.C.G.H.G.
57.599.834.3At1g78950844234beta-amyrin synthase, putativeF:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMAO.I.C.G.H.G.
57.299.849.9At4g36110829768auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
55.699.893.8At5g37300833704WSD1Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.O.I.C.G.H.G.
53.199.8101.2At3g01980821069short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOFMPAO.I.C.G.H.G.
49.899.8133.1At1g35190840408oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:alkaloid biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
49.099.845.8At5g45940834634atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.O.I.C.G.H.G.
47.999.864.0At1g23010838909LPR1 (Low Phosphate Root1)Encodes a protein with multicopper oxidase activity.O.I.C.G.H.G.
46.499.846.9At3g25810822173myrcene/ocimene synthase, putativeF:in 7 functions;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
44.599.814.3At5g53810835462O-methyltransferase, putativeF:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
40.899.836.7At5g57520835856ZFP2 (ZINC FINGER PROTEIN 2)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
40.599.825.1At2g46640819276unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
38.899.825.7At1g43590840943transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
37.899.826.7At5g24860832555FPF1 (FLOWERING PROMOTING FACTOR 1)encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.O.I.C.G.H.G.
36.899.778.4At2g36190818191AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAO.I.C.G.H.G.
36.799.727.2At1g07450837257tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
36.499.729.3At1g75300843867isoflavone reductase, putativeencodes a protein whose sequence is similar to an isoflavone reductaseO.I.C.G.H.G.
35.199.768.2At3g14380820659integral membrane family proteinF:unknown;P:unknown;C:membrane;PO.I.C.G.H.G.
34.199.715.9At1g130703766715-putative cytochrome P450O.I.C.G.H.G.
33.599.770.6At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
32.899.727.0At5g23960832461TPS21 (TERPENE SYNTHASE 21)Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.O.I.C.G.H.G.
31.899.713.6At2g21655816704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.699.7114.2At3g26860822302-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.599.737.6At1g23060838914unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFVO.I.C.G.H.G.
31.499.746.5At5g04200830299AtMC9 (metacaspase 9)F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOAO.I.C.G.H.G.
30.999.7130.5At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.O.I.C.G.H.G.
29.999.716.0At1g20180838607unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
29.599.7335.1At1g72260843558THI2.1 (THIONIN 2.1)Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
29.499.713.4At1g09155837435AtPP2-B15 (Phloem protein 2-B15)F:carbohydrate binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
29.299.794.0At3g28007822424nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
29.299.734.7At4g10310826623HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots.O.I.C.G.H.G.
28.999.751.4At1g25330839117basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
28.799.791.4At1g76240843957unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;PMOO.I.C.G.H.G.
28.699.738.1At1g03170839563unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
28.399.7144.7At2g02850814816ARPN (PLANTACYANIN)Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.O.I.C.G.H.G.
28.399.791.5At5g66590836791allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
28.299.783.9At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
28.099.7106.7At4g16515827350unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
27.899.7140.4At2g29340817483short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
27.599.722.7At5g37170833690O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
27.299.770.4At3g55110824677ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.C.G.H.G.
26.899.721.3At3g14395820661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.399.776.9At3g49870824149ATARLA1C (ADP-ribosylation factor-like A1C)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.C.G.H.G.
26.199.719.1At1g29460839822auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
25.199.6166.1At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
24.999.620.9At3g55870824753anthranilate synthase, alpha subunit, putativeF:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPMO.I.C.G.H.G.
24.299.6107.0At1g51240841547-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.099.684.5At5g44630834491terpene synthase/cyclase family proteinEncodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.O.I.C.G.H.G.
23.899.620.4At1g65445842856transferase-relatedF:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
23.799.676.5At2g38110818389GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)Encodes a protein with glycerol-3-phosphate acyltransferase activity.O.I.C.G.H.G.
23.799.614.6At5g42230834228scpl41 (serine carboxypeptidase-like 41)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
23.099.630.9At1g22380838845AtUGT85A3 (UDP-glucosyl transferase 85A3)F:transferase activity, transferring glycosyl groups, transcription factor activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOFO.I.C.G.H.G.
21.999.632.2At1g29440839820-F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
21.899.686.1At5g65870836716ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
21.599.676.6At3g21550821709unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.199.622.6At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
21.099.635.7At4g24000828500ATCSLG2encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
21.099.616.8At1g02070839270unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.099.614.5At4g27590828869copper-binding protein-relatedF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
20.899.672.1At3g22420821810WNK2 (WITH NO K 2)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.O.I.C.G.H.G.
20.499.694.1At5g20270832149HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1)heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptorsO.I.C.G.H.G.
20.299.688.9At1g14280837989PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.O.I.C.G.H.G.
19.999.6169.8At3g01240821219unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
19.799.6263.2At5g45880834628pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.C.G.H.G.
19.699.697.2At1g44970841062peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
19.699.681.9At3g51895824353SULTR3Encodes a sulfate transporter.O.I.C.G.H.G.
19.599.68.9At2g17470816253unknown proteinF:unknown;P:biological_process unknown;C:unknown;BPOFO.I.C.G.H.G.
19.499.649.8At5g62750836396unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
19.399.6201.6At4g02250827589invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage