CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM62694

Assay name Columbia flowers_stage 1-10

GSE experiment GSE2848: Auxin Response Factor mediated flower gene expression

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
265.5 100.0 47.0 At1g26710 839212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
248.8 100.0 167.2 At1g61070 842399 LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
218.9 100.0 226.9 At1g06260 837137 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
193.3 100.0 119.8 At1g13140 837871 CYP86C3 member of CYP86C O.I. C.G. H.G.
168.8 100.0 129.2 At5g48210 834874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
161.8 99.9 166.3 At4g28395 828956 ATA7 related to lipid transfer proteins O.I. C.G. H.G.
153.8 99.9 100.8 At1g75920 843925 family II extracellular lipase 5 (EXL5) F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM O.I. C.G. H.G.
149.2 99.9 109.0 At4g14815 827138 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
145.0 99.9 107.9 At1g28375 839734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
137.7 99.9 135.2 At2g03740 814901 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA O.I. C.G. H.G.
135.7 99.9 79.2 At5g65205 836644 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
135.3 99.9 252.2 At3g25050 822096 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment. O.I. C.G. H.G.
132.2 99.9 111.4 At5g16920 831555 - F:molecular_function unknown;P:unknown;C:endomembrane system;PO O.I. C.G. H.G.
131.7 99.9 122.5 At5g16960 831559 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPA O.I. C.G. H.G.
128.9 99.9 33.6 At4g29250 829046 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
116.4 99.9 351.8 At3g51590 824322 LTP12 (LIPID TRANSFER PROTEIN 12) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
115.8 99.9 145.5 At2g03850 814911 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA O.I. C.G. H.G.
112.7 99.9 76.5 At3g52160 824381 KCS15 (3-KETOACYL-COA SYNTHASE 15) Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
112.0 99.9 227.7 At1g67990 843127 TSM1 Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting. O.I. C.G. H.G.
108.1 99.9 41.8 At1g75790 843912 sks18 (SKU5 Similar 18) F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
107.2 99.9 127.2 At1g02813 839360 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
98.9 99.9 240.2 At1g75910 843924 EXL4 member of Lipase proteins O.I. C.G. H.G.
98.4 99.9 65.6 At1g74540 843795 CYP98A8 member of CYP98A O.I. C.G. H.G.
95.7 99.9 94.1 At1g20120 838601 family II extracellular lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV O.I. C.G. H.G.
90.5 99.9 71.3 At1g23570 838967 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
88.1 99.9 257.4 At1g68875 843220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
87.7 99.9 21.8 At5g62320 836353 ATMYB99 (MYB DOMAIN PROTEIN 99) Encodes a putative transcription factor (MYB99). O.I. C.G. H.G.
86.2 99.9 37.2 At1g71160 843456 KCS7 (3-KETOACYL-COA SYNTHASE 7) Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
84.5 99.9 25.5 At1g06990 837209 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
83.3 99.9 55.9 At1g74550 843796 CYP98A9 member of CYP98A O.I. C.G. H.G.
80.3 99.9 42.8 At1g13150 837873 CYP86C4 member of CYP86C O.I. C.G. H.G.
78.0 99.9 99.5 At5g61605 836282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
75.1 99.9 93.0 At1g61110 842404 anac025 (Arabidopsis NAC domain containing protein 25) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
75.1 99.9 78.1 At3g26125 822212 CYP86C2 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
70.9 99.9 252.4 At1g75940 843927 ATA27 encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen. O.I. C.G. H.G.
68.0 99.9 89.4 At1g30020 839881 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
65.8 99.8 58.8 At1g24600 839074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
65.1 99.8 52.5 At2g19070 816424 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) O.I. C.G. H.G.
65.1 99.8 28.1 At2g18420 816357 - Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein O.I. C.G. H.G.
64.9 99.8 129.9 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. O.I. C.G. H.G.
62.7 99.8 28.6 At5g60500 836171 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein F:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP O.I. C.G. H.G.
61.4 99.8 110.2 At4g37900 829946 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA O.I. C.G. H.G.
60.5 99.8 35.5 At1g20150 838605 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
60.0 99.8 55.4 At5g13380 831179 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF O.I. C.G. H.G.
57.5 99.8 70.1 At1g69500 843283 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV O.I. C.G. H.G.
57.0 99.8 239.9 At2g04570 814999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
56.1 99.8 138.2 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO O.I. C.G. H.G.
56.0 99.8 66.5 At5g07510 830644 GRP14 encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers. O.I. C.G. H.G.
53.7 99.8 176.4 At1g75930 843926 EXL6 member of Lipase proteins O.I. C.G. H.G.
52.2 99.8 148.3 At1g33430 840236 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPO O.I. C.G. H.G.
51.8 99.8 52.7 At5g07520 830645 GRP18 (GLYCINE-RICH PROTEIN 18) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12). O.I. C.G. H.G.
50.7 99.8 19.8 At1g06250 837135 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMV O.I. C.G. H.G.
49.9 99.8 17.8 At5g49070 834966 KCS21 (3-KETOACYL-COA SYNTHASE 21) Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
49.0 99.8 75.2 At1g75030 843841 ATLP-3 encodes a PR5-like protein O.I. C.G. H.G.
47.9 99.8 54.6 At4g00040 828224 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF O.I. C.G. H.G.
47.2 99.8 32.5 At2g16910 816194 AMS (ABORTED MICROSPORES) Sporophytic male sterile; MYC Transcription Factor O.I. C.G. H.G.
47.0 99.8 16.6 At1g23690 838979 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
43.9 99.8 65.4 At1g76470 843980 3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAV O.I. C.G. H.G.
43.6 99.8 59.5 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. O.I. C.G. H.G.
43.4 99.8 64.7 At3g11980 820372 MS2 (MALE STERILITY 2) Similar to fatty acid reductases. O.I. C.G. H.G.
43.3 99.8 65.1 At1g12570 837814 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
42.3 99.8 197.2 At5g07560 830649 GRP20 (GLYCINE-RICH PROTEIN 20) Lipid-binding oleosins, glycine-rich protein. O.I. C.G. H.G.
40.6 99.8 26.8 At3g52810 824447 PAP21 (PURPLE ACID PHOSPHATASE 21) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA O.I. C.G. H.G.
40.4 99.8 151.7 At5g62080 836328 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
40.0 99.8 10.7 At3g55100 824676 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
39.2 99.8 29.1 At3g23840 821967 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:chloroplast thylakoid membrane;PFB O.I. C.G. H.G.
38.7 99.8 69.3 At3g57810 824950 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:unknown;MPOF O.I. C.G. H.G.
38.6 99.8 441.8 At3g15400 820779 ATA20 Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein. O.I. C.G. H.G.
37.4 99.7 51.2 At5g53190 835400 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO O.I. C.G. H.G.
37.3 99.7 77.8 At2g23800 816912 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2) encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase O.I. C.G. H.G.
36.7 99.7 18.4 At1g23590 838969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.4 99.7 403.1 At1g66850 843003 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
36.2 99.7 97.0 At1g69120 843244 AP1 (APETALA1) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24. O.I. C.G. H.G.
36.1 99.7 19.9 At1g79780 844317 - F:molecular_function unknown;P:biological_process unknown;C:membrane;P O.I. C.G. H.G.
35.8 99.7 42.3 At3g15270 820758 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
35.7 99.7 21.5 At1g23560 838966 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.5 99.7 29.4 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
35.3 99.7 122.2 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.8 99.7 31.5 At1g22015 838806 DD46 F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOF O.I. C.G. H.G.
34.2 99.7 22.7 At1g23670 838977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.0 99.7 23.3 At1g43590 840943 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
31.5 99.7 142.4 At1g47980 841216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
30.3 99.7 27.5 At3g06100 819783 NIP7 F:water channel activity;P:transport;C:membrane;BPMOFAV O.I. C.G. H.G.
30.2 99.7 83.8 At3g18850 821418 LPAT5 F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPV O.I. C.G. H.G.
29.4 99.7 8.8 At4g27330 828841 SPL (SPOROCYTELESS) Encodes a putative transcription factor that is required for the initiation of both micro- and megagametogenesis and is expressed in the sporogenous tissue of the anther and the ovule. SPL is a chalaza identity gene that share overlapping functions in establishing the prospective chalaza of the ovule. It also plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes in the ovule and generally interacts with YABBY proteins in vitro. Mutant is defective in the differentiation of primary sporogenous cells into microsporocytes, and does not properly form the anther wall. Regulator of anther cell differenctiation O.I. C.G. H.G.
28.8 99.7 93.3 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO O.I. C.G. H.G.
28.8 99.7 87.9 At1g78960 844236 ATLUP2 Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. O.I. C.G. H.G.
28.0 99.7 35.3 At4g23660 828466 AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1) Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50). O.I. C.G. H.G.
27.9 99.7 18.9 At1g23600 838970 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.6 99.7 52.4 At4g30500 829173 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
27.3 99.7 16.6 At4g27590 828869 copper-binding protein-related F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
27.1 99.7 58.7 At4g20320 827780 CTP synthase/ catalytic F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:cellular_component unknown;OBMFAP O.I. C.G. H.G.
27.0 99.7 53.1 At3g59530 825122 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFA O.I. C.G. H.G.
26.7 99.7 378.1 At2g20870 816620 cell wall protein precursor, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMF O.I. C.G. H.G.
26.4 99.7 75.1 At3g10570 820222 CYP77A6 member of CYP77A O.I. C.G. H.G.
26.2 99.7 28.1 At1g30350 839915 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
25.5 99.7 56.3 At1g68540 843183 oxidoreductase family protein F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
25.5 99.7 19.7 At1g23520 838960 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.1 99.6 16.0 At1g19830 838570 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
24.8 99.6 31.6 At5g15310 831383 ATMYB16 (MYB DOMAIN PROTEIN 16) Member of the R2R3 factor gene family. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
265.5	100.0	47.0	At1g26710	839212	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
248.8	100.0	167.2	At1g61070	842399	LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
218.9	100.0	226.9	At1g06260	837137	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
193.3	100.0	119.8	At1g13140	837871	CYP86C3	member of CYP86C	O.I.	C.G.	H.G.
168.8	100.0	129.2	At5g48210	834874	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
161.8	99.9	166.3	At4g28395	828956	ATA7	related to lipid transfer proteins	O.I.	C.G.	H.G.
153.8	99.9	100.8	At1g75920	843925	family II extracellular lipase 5 (EXL5)	F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM	O.I.	C.G.	H.G.
149.2	99.9	109.0	At4g14815	827138	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
145.0	99.9	107.9	At1g28375	839734	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
137.7	99.9	135.2	At2g03740	814901	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA	O.I.	C.G.	H.G.
135.7	99.9	79.2	At5g65205	836644	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
135.3	99.9	252.2	At3g25050	822096	XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)	encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.	O.I.	C.G.	H.G.
132.2	99.9	111.4	At5g16920	831555	-	F:molecular_function unknown;P:unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
131.7	99.9	122.5	At5g16960	831559	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPA	O.I.	C.G.	H.G.
128.9	99.9	33.6	At4g29250	829046	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
116.4	99.9	351.8	At3g51590	824322	LTP12 (LIPID TRANSFER PROTEIN 12)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
115.8	99.9	145.5	At2g03850	814911	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA	O.I.	C.G.	H.G.
112.7	99.9	76.5	At3g52160	824381	KCS15 (3-KETOACYL-COA SYNTHASE 15)	Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
112.0	99.9	227.7	At1g67990	843127	TSM1	Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.	O.I.	C.G.	H.G.
108.1	99.9	41.8	At1g75790	843912	sks18 (SKU5 Similar 18)	F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
107.2	99.9	127.2	At1g02813	839360	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
98.9	99.9	240.2	At1g75910	843924	EXL4	member of Lipase proteins	O.I.	C.G.	H.G.
98.4	99.9	65.6	At1g74540	843795	CYP98A8	member of CYP98A	O.I.	C.G.	H.G.
95.7	99.9	94.1	At1g20120	838601	family II extracellular lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV	O.I.	C.G.	H.G.
90.5	99.9	71.3	At1g23570	838967	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
88.1	99.9	257.4	At1g68875	843220	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
87.7	99.9	21.8	At5g62320	836353	ATMYB99 (MYB DOMAIN PROTEIN 99)	Encodes a putative transcription factor (MYB99).	O.I.	C.G.	H.G.
86.2	99.9	37.2	At1g71160	843456	KCS7 (3-KETOACYL-COA SYNTHASE 7)	Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
84.5	99.9	25.5	At1g06990	837209	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
83.3	99.9	55.9	At1g74550	843796	CYP98A9	member of CYP98A	O.I.	C.G.	H.G.
80.3	99.9	42.8	At1g13150	837873	CYP86C4	member of CYP86C	O.I.	C.G.	H.G.
78.0	99.9	99.5	At5g61605	836282	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
75.1	99.9	93.0	At1g61110	842404	anac025 (Arabidopsis NAC domain containing protein 25)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
75.1	99.9	78.1	At3g26125	822212	CYP86C2	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
70.9	99.9	252.4	At1g75940	843927	ATA27	encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.	O.I.	C.G.	H.G.
68.0	99.9	89.4	At1g30020	839881	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.8	99.8	58.8	At1g24600	839074	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.1	99.8	52.5	At2g19070	816424	SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)	encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)	O.I.	C.G.	H.G.
65.1	99.8	28.1	At2g18420	816357	-	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	O.I.	C.G.	H.G.
64.9	99.8	129.9	At1g58430	842212	RXF26	Encodes an anther-specific proline-rich protein.	O.I.	C.G.	H.G.
62.7	99.8	28.6	At5g60500	836171	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	F:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP	O.I.	C.G.	H.G.
61.4	99.8	110.2	At4g37900	829946	glycine-rich protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA	O.I.	C.G.	H.G.
60.5	99.8	35.5	At1g20150	838605	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
60.0	99.8	55.4	At5g13380	831179	auxin-responsive GH3 family protein	F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF	O.I.	C.G.	H.G.
57.5	99.8	70.1	At1g69500	843283	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV	O.I.	C.G.	H.G.
57.0	99.8	239.9	At2g04570	814999	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
56.1	99.8	138.2	At1g23240	838933	caleosin-related family protein	F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO	O.I.	C.G.	H.G.
56.0	99.8	66.5	At5g07510	830644	GRP14	encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.	O.I.	C.G.	H.G.
53.7	99.8	176.4	At1g75930	843926	EXL6	member of Lipase proteins	O.I.	C.G.	H.G.
52.2	99.8	148.3	At1g33430	840236	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPO	O.I.	C.G.	H.G.
51.8	99.8	52.7	At5g07520	830645	GRP18 (GLYCINE-RICH PROTEIN 18)	encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12).	O.I.	C.G.	H.G.
50.7	99.8	19.8	At1g06250	837135	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMV	O.I.	C.G.	H.G.
49.9	99.8	17.8	At5g49070	834966	KCS21 (3-KETOACYL-COA SYNTHASE 21)	Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
49.0	99.8	75.2	At1g75030	843841	ATLP-3	encodes a PR5-like protein	O.I.	C.G.	H.G.
47.9	99.8	54.6	At4g00040	828224	chalcone and stilbene synthase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF	O.I.	C.G.	H.G.
47.2	99.8	32.5	At2g16910	816194	AMS (ABORTED MICROSPORES)	Sporophytic male sterile; MYC Transcription Factor	O.I.	C.G.	H.G.
47.0	99.8	16.6	At1g23690	838979	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
43.9	99.8	65.4	At1g76470	843980	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAV	O.I.	C.G.	H.G.
43.6	99.8	59.5	At1g62940	842596	ACOS5 (ACYL-COA SYNTHETASE 5)	encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.	O.I.	C.G.	H.G.
43.4	99.8	64.7	At3g11980	820372	MS2 (MALE STERILITY 2)	Similar to fatty acid reductases.	O.I.	C.G.	H.G.
43.3	99.8	65.1	At1g12570	837814	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
42.3	99.8	197.2	At5g07560	830649	GRP20 (GLYCINE-RICH PROTEIN 20)	Lipid-binding oleosins, glycine-rich protein.	O.I.	C.G.	H.G.
40.6	99.8	26.8	At3g52810	824447	PAP21 (PURPLE ACID PHOSPHATASE 21)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA	O.I.	C.G.	H.G.
40.4	99.8	151.7	At5g62080	836328	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
40.0	99.8	10.7	At3g55100	824676	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
39.2	99.8	29.1	At3g23840	821967	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:chloroplast thylakoid membrane;PFB	O.I.	C.G.	H.G.
38.7	99.8	69.3	At3g57810	824950	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
38.6	99.8	441.8	At3g15400	820779	ATA20	Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.	O.I.	C.G.	H.G.
37.4	99.7	51.2	At5g53190	835400	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
37.3	99.7	77.8	At2g23800	816912	GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2)	encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase	O.I.	C.G.	H.G.
36.7	99.7	18.4	At1g23590	838969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.4	99.7	403.1	At1g66850	843003	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
36.2	99.7	97.0	At1g69120	843244	AP1 (APETALA1)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	O.I.	C.G.	H.G.
36.1	99.7	19.9	At1g79780	844317	-	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	O.I.	C.G.	H.G.
35.8	99.7	42.3	At3g15270	820758	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
35.7	99.7	21.5	At1g23560	838966	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.5	99.7	29.4	At5g45960	834636	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
35.3	99.7	122.2	At4g20420	827790	tapetum-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.8	99.7	31.5	At1g22015	838806	DD46	F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOF	O.I.	C.G.	H.G.
34.2	99.7	22.7	At1g23670	838977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.0	99.7	23.3	At1g43590	840943	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
31.5	99.7	142.4	At1g47980	841216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
30.3	99.7	27.5	At3g06100	819783	NIP7	F:water channel activity;P:transport;C:membrane;BPMOFAV	O.I.	C.G.	H.G.
30.2	99.7	83.8	At3g18850	821418	LPAT5	F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPV	O.I.	C.G.	H.G.
29.4	99.7	8.8	At4g27330	828841	SPL (SPOROCYTELESS)	Encodes a putative transcription factor that is required for the initiation of both micro- and megagametogenesis and is expressed in the sporogenous tissue of the anther and the ovule. SPL is a chalaza identity gene that share overlapping functions in establishing the prospective chalaza of the ovule. It also plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes in the ovule and generally interacts with YABBY proteins in vitro. Mutant is defective in the differentiation of primary sporogenous cells into microsporocytes, and does not properly form the anther wall. Regulator of anther cell differenctiation	O.I.	C.G.	H.G.
28.8	99.7	93.3	At4g14080	827044	MEE48 (maternal effect embryo arrest 48)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO	O.I.	C.G.	H.G.
28.8	99.7	87.9	At1g78960	844236	ATLUP2	Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	O.I.	C.G.	H.G.
28.0	99.7	35.3	At4g23660	828466	AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1)	Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).	O.I.	C.G.	H.G.
27.9	99.7	18.9	At1g23600	838970	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.6	99.7	52.4	At4g30500	829173	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
27.3	99.7	16.6	At4g27590	828869	copper-binding protein-related	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.1	99.7	58.7	At4g20320	827780	CTP synthase/ catalytic	F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:cellular_component unknown;OBMFAP	O.I.	C.G.	H.G.
27.0	99.7	53.1	At3g59530	825122	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFA	O.I.	C.G.	H.G.
26.7	99.7	378.1	At2g20870	816620	cell wall protein precursor, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMF	O.I.	C.G.	H.G.
26.4	99.7	75.1	At3g10570	820222	CYP77A6	member of CYP77A	O.I.	C.G.	H.G.
26.2	99.7	28.1	At1g30350	839915	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
25.5	99.7	56.3	At1g68540	843183	oxidoreductase family protein	F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
25.5	99.7	19.7	At1g23520	838960	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.1	99.6	16.0	At1g19830	838570	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
24.8	99.6	31.6	At5g15310	831383	ATMYB16 (MYB DOMAIN PROTEIN 16)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.

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GSM ID	GSM62694
Assay name	Columbia flowers_stage 1-10
GSE experiment	GSE2848: Auxin Response Factor mediated flower gene expression

Microarray experiments to specifically-expressed genes

GSM ID GSM62694 Assay name Columbia flowers_stage 1-10 GSE experiment GSE2848: Auxin Response Factor mediated flower gene expression

GSM ID GSM62694

Assay name Columbia flowers_stage 1-10

GSE experiment GSE2848: Auxin Response Factor mediated flower gene expression