CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM47049

Assay name Col-0 39

GSE experiment GSE2473: Small RNA biogenesis mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
45.7 99.8 102.5 At5g20740 832197 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
39.6 99.8 75.9 At4g21650 828252 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
36.2 99.7 145.8 At1g35310 840420 MLP168 (MLP-LIKE PROTEIN 168) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
36.2 99.7 130.5 At3g25050 822096 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment. O.I. C.G. H.G.
32.0 99.7 61.7 At3g12000 820374 S-locus related protein SLR1, putative (S1) F:sugar binding;P:recognition of pollen;C:endomembrane system;PO O.I. C.G. H.G.
30.0 99.7 170.8 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
28.4 99.7 328.8 At5g07550 830648 GRP19 (GLYCINE-RICH PROTEIN 19) member of Oleosin-like protein family O.I. C.G. H.G.
27.9 99.7 127.6 At1g75910 843924 EXL4 member of Lipase proteins O.I. C.G. H.G.
27.3 99.7 129.4 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA O.I. C.G. H.G.
26.9 99.7 84.9 At1g78960 844236 ATLUP2 Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. O.I. C.G. H.G.
26.6 99.7 34.7 At4g14695 827120 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. C.G. H.G.
26.5 99.7 141.2 At1g68875 843220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.4 99.7 208.2 At5g07530 830646 GRP17 (GLYCINE RICH PROTEIN 17) encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat. O.I. C.G. H.G.
24.5 99.6 197.5 At5g22430 832304 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
24.5 99.6 66.9 At2g03850 814911 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA O.I. C.G. H.G.
24.3 99.6 14.2 At1g26710 839212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
24.1 99.6 79.2 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. O.I. C.G. H.G.
23.3 99.6 59.1 At2g42990 818901 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
23.2 99.6 113.0 At1g57750 842150 CYP96A15 (CYTOCHROME P450 96 A1) Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis. O.I. C.G. H.G.
23.0 99.6 320.6 At1g66850 843003 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
22.5 99.6 72.8 At1g06260 837137 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
22.3 99.6 141.6 At1g75940 843927 ATA27 encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen. O.I. C.G. H.G.
22.0 99.6 463.4 At5g24770 832546 VSP2 (VEGETATIVE STORAGE PROTEIN 2) Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding. O.I. C.G. H.G.
21.9 99.6 57.1 At1g02190 839541 CER1 protein, putative F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMV O.I. C.G. H.G.
21.7 99.6 100.2 At1g67990 843127 TSM1 Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting. O.I. C.G. H.G.
21.4 99.6 338.0 At2g20870 816620 cell wall protein precursor, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMF O.I. C.G. H.G.
21.0 99.6 84.5 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO O.I. C.G. H.G.
20.8 99.6 62.7 At4g16590 827360 ATCSLA01 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
19.8 99.6 39.9 At1g28375 839734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.5 99.6 228.0 At3g28500 822480 60S acidic ribosomal protein P2 (RPP2C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB O.I. C.G. H.G.
18.8 99.5 141.5 At3g51590 824322 LTP12 (LIPID TRANSFER PROTEIN 12) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
17.7 99.5 53.0 At5g37300 833704 WSD1 Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis. O.I. C.G. H.G.
17.4 99.5 29.4 At1g35290 840418 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPA O.I. C.G. H.G.
17.1 99.5 87.8 At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO O.I. C.G. H.G.
17.0 99.5 26.8 At2g19070 816424 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) O.I. C.G. H.G.
16.6 99.5 16.8 At3g14395 820661 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.4 99.5 205.0 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
16.4 99.5 36.7 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. O.I. C.G. H.G.
16.2 99.5 96.9 At1g75930 843926 EXL6 member of Lipase proteins O.I. C.G. H.G.
16.1 99.5 74.0 At2g47240 819337 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis O.I. C.G. H.G.
15.8 99.5 38.3 At1g20120 838601 family II extracellular lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV O.I. C.G. H.G.
15.2 99.4 98.1 At1g06350 837146 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
15.2 99.4 50.9 At1g54020 841840 myrosinase-associated protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBM O.I. C.G. H.G.
15.2 99.4 43.1 At1g66350 842953 RGL1 (RGA-LIKE 1) Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. O.I. C.G. H.G.
14.9 99.4 19.0 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
14.7 99.4 69.7 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
14.2 99.4 119.9 At2g04570 814999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
14.2 99.4 59.3 At2g38110 818389 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) Encodes a protein with glycerol-3-phosphate acyltransferase activity. O.I. C.G. H.G.
14.0 99.4 32.2 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
13.8 99.4 90.7 At3g45930 823736 histone H4 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV O.I. C.G. H.G.
13.8 99.4 32.0 At4g28680 828986 tyrosine decarboxylase, putative Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers. O.I. C.G. H.G.
13.6 99.4 51.9 At4g37900 829946 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA O.I. C.G. H.G.
13.6 99.4 36.4 At1g12570 837814 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
13.5 99.4 89.6 At5g22880 832352 HTB2 Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. O.I. C.G. H.G.
13.3 99.4 38.6 At1g61070 842399 LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
13.2 99.4 32.5 At4g14815 827138 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
13.0 99.4 62.3 At5g44630 834491 terpene synthase/cyclase family protein Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries. O.I. C.G. H.G.
13.0 99.4 56.9 At1g72290 843561 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.0 99.4 25.5 At3g15270 820758 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
13.0 99.4 13.7 At5g22980 832362 scpl47 (serine carboxypeptidase-like 47) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
12.9 99.3 26.1 At2g22970 816828 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB O.I. C.G. H.G.
12.8 99.3 97.4 At2g02850 814816 ARPN (PLANTACYANIN) Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. O.I. C.G. H.G.
12.7 99.3 43.3 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. O.I. C.G. H.G.
12.7 99.3 18.0 At4g39480 830103 CYP96A9 (CYTOCHROME P450 96 A9) member of CYP96A O.I. C.G. H.G.
12.6 99.3 77.9 At1g44970 841062 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
12.6 99.3 51.8 At3g10570 820222 CYP77A6 member of CYP77A O.I. C.G. H.G.
12.5 99.3 75.9 At3g02310 821151 SEP2 (SEPALLATA 2) MADS-box protein, binds K domain of AG in vivo O.I. C.G. H.G.
12.5 99.3 36.9 At1g75880 843921 family II extracellular lipase 1 (EXL1) F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM O.I. C.G. H.G.
12.4 99.3 40.5 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. O.I. C.G. H.G.
12.3 99.3 249.6 At3g15400 820779 ATA20 Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein. O.I. C.G. H.G.
12.3 99.3 127.0 At1g02205 837602 CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase. O.I. C.G. H.G.
12.3 99.3 33.7 At1g31340 840023 RUB1 (RELATED TO UBIQUITIN 1) Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. O.I. C.G. H.G.
12.2 99.3 30.1 At1g13140 837871 CYP86C3 member of CYP86C O.I. C.G. H.G.
12.0 99.3 213.2 At1g72260 843558 THI2.1 (THIONIN 2.1) Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
12.0 99.3 34.4 At5g48210 834874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.0 99.3 24.7 At1g03170 839563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
12.0 99.3 15.6 At1g07450 837257 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
11.9 99.3 31.9 At5g43270 834345 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2) member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the O.I. C.G. H.G.
11.7 99.3 12.6 At1g21540 838755 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
11.6 99.3 224.0 At3g04290 819584 LTL1 (LI-TOLERANT LIPASE 1) F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
11.6 99.3 56.3 At2g39330 818518 JAL23 (JACALIN-RELATED LECTIN 23) F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF O.I. C.G. H.G.
11.6 99.3 39.2 At2g03740 814901 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA O.I. C.G. H.G.
11.6 99.3 13.6 At1g72110 843542 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
11.4 99.3 287.1 At5g59310 836050 LTP4 (LIPID TRANSFER PROTEIN 4) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
11.4 99.3 53.2 At4g33790 829521 CER4 (ECERIFERUM 4) Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces. O.I. C.G. H.G.
11.3 99.3 373.7 At1g24020 839014 MLP423 (MLP-LIKE PROTEIN 423) F:unknown;P:response to biotic stimulus, defense response;C:membrane;PBO O.I. C.G. H.G.
11.0 99.2 330.6 At4g39330 830088 CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:apoplast;BOPFMAV O.I. C.G. H.G.
10.8 99.2 174.8 At1g55260 841970 lipid binding F:lipid binding;P:lipid transport;C:nucleus, anchored to membrane;PO O.I. C.G. H.G.
10.8 99.2 58.9 At2g41650 818763 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.7 99.2 60.5 At4g24510 828553 CER2 (ECERIFERUM 2) Involved in C28 to C30 fatty acid elongation. O.I. C.G. H.G.
10.7 99.2 7.1 At3g50890 824253 AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;P O.I. C.G. H.G.
10.6 99.2 212.5 At4g23680 828468 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
10.6 99.2 138.0 At1g72970 843628 HTH (HOTHEAD) Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. O.I. C.G. H.G.
10.6 99.2 72.1 At3g54340 824601 AP3 (APETALA 3) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA. O.I. C.G. H.G.
10.6 99.2 50.3 At1g49430 841367 LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation. O.I. C.G. H.G.
10.5 99.2 66.7 At1g33430 840236 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPO O.I. C.G. H.G.
10.2 99.2 39.5 At3g55290 824695 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAV O.I. C.G. H.G.
10.2 99.2 14.7 At1g62540 842551 FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
10.1 99.2 75.7 At5g62080 836328 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
10.1 99.2 34.0 At5g16960 831559 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
45.7	99.8	102.5	At5g20740	832197	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
39.6	99.8	75.9	At4g21650	828252	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
36.2	99.7	145.8	At1g35310	840420	MLP168 (MLP-LIKE PROTEIN 168)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.2	99.7	130.5	At3g25050	822096	XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)	encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.	O.I.	C.G.	H.G.
32.0	99.7	61.7	At3g12000	820374	S-locus related protein SLR1, putative (S1)	F:sugar binding;P:recognition of pollen;C:endomembrane system;PO	O.I.	C.G.	H.G.
30.0	99.7	170.8	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
28.4	99.7	328.8	At5g07550	830648	GRP19 (GLYCINE-RICH PROTEIN 19)	member of Oleosin-like protein family	O.I.	C.G.	H.G.
27.9	99.7	127.6	At1g75910	843924	EXL4	member of Lipase proteins	O.I.	C.G.	H.G.
27.3	99.7	129.4	At5g62210	836342	embryo-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA	O.I.	C.G.	H.G.
26.9	99.7	84.9	At1g78960	844236	ATLUP2	Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	O.I.	C.G.	H.G.
26.6	99.7	34.7	At4g14695	827120	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;MFPO	O.I.	C.G.	H.G.
26.5	99.7	141.2	At1g68875	843220	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.4	99.7	208.2	At5g07530	830646	GRP17 (GLYCINE RICH PROTEIN 17)	encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.	O.I.	C.G.	H.G.
24.5	99.6	197.5	At5g22430	832304	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
24.5	99.6	66.9	At2g03850	814911	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA	O.I.	C.G.	H.G.
24.3	99.6	14.2	At1g26710	839212	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
24.1	99.6	79.2	At1g58430	842212	RXF26	Encodes an anther-specific proline-rich protein.	O.I.	C.G.	H.G.
23.3	99.6	59.1	At2g42990	818901	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
23.2	99.6	113.0	At1g57750	842150	CYP96A15 (CYTOCHROME P450 96 A1)	Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.	O.I.	C.G.	H.G.
23.0	99.6	320.6	At1g66850	843003	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
22.5	99.6	72.8	At1g06260	837137	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
22.3	99.6	141.6	At1g75940	843927	ATA27	encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.	O.I.	C.G.	H.G.
22.0	99.6	463.4	At5g24770	832546	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.	O.I.	C.G.	H.G.
21.9	99.6	57.1	At1g02190	839541	CER1 protein, putative	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMV	O.I.	C.G.	H.G.
21.7	99.6	100.2	At1g67990	843127	TSM1	Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.	O.I.	C.G.	H.G.
21.4	99.6	338.0	At2g20870	816620	cell wall protein precursor, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMF	O.I.	C.G.	H.G.
21.0	99.6	84.5	At1g23240	838933	caleosin-related family protein	F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO	O.I.	C.G.	H.G.
20.8	99.6	62.7	At4g16590	827360	ATCSLA01	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
19.8	99.6	39.9	At1g28375	839734	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.5	99.6	228.0	At3g28500	822480	60S acidic ribosomal protein P2 (RPP2C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB	O.I.	C.G.	H.G.
18.8	99.5	141.5	At3g51590	824322	LTP12 (LIPID TRANSFER PROTEIN 12)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
17.7	99.5	53.0	At5g37300	833704	WSD1	Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.	O.I.	C.G.	H.G.
17.4	99.5	29.4	At1g35290	840418	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPA	O.I.	C.G.	H.G.
17.1	99.5	87.8	At5g23940	832459	EMB3009 (embryo defective 3009)	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
17.0	99.5	26.8	At2g19070	816424	SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)	encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)	O.I.	C.G.	H.G.
16.6	99.5	16.8	At3g14395	820661	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.4	99.5	205.0	At5g33370	833315	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
16.4	99.5	36.7	At1g63710	842675	CYP86A7	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers.	O.I.	C.G.	H.G.
16.2	99.5	96.9	At1g75930	843926	EXL6	member of Lipase proteins	O.I.	C.G.	H.G.
16.1	99.5	74.0	At2g47240	819337	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein	Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis	O.I.	C.G.	H.G.
15.8	99.5	38.3	At1g20120	838601	family II extracellular lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV	O.I.	C.G.	H.G.
15.2	99.4	98.1	At1g06350	837146	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
15.2	99.4	50.9	At1g54020	841840	myrosinase-associated protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBM	O.I.	C.G.	H.G.
15.2	99.4	43.1	At1g66350	842953	RGL1 (RGA-LIKE 1)	Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.	O.I.	C.G.	H.G.
14.9	99.4	19.0	At5g45960	834636	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
14.7	99.4	69.7	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
14.2	99.4	119.9	At2g04570	814999	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
14.2	99.4	59.3	At2g38110	818389	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	Encodes a protein with glycerol-3-phosphate acyltransferase activity.	O.I.	C.G.	H.G.
14.0	99.4	32.2	At5g55720	835666	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
13.8	99.4	90.7	At3g45930	823736	histone H4	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV	O.I.	C.G.	H.G.
13.8	99.4	32.0	At4g28680	828986	tyrosine decarboxylase, putative	Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.	O.I.	C.G.	H.G.
13.6	99.4	51.9	At4g37900	829946	glycine-rich protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA	O.I.	C.G.	H.G.
13.6	99.4	36.4	At1g12570	837814	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
13.5	99.4	89.6	At5g22880	832352	HTB2	Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.	O.I.	C.G.	H.G.
13.3	99.4	38.6	At1g61070	842399	LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
13.2	99.4	32.5	At4g14815	827138	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
13.0	99.4	62.3	At5g44630	834491	terpene synthase/cyclase family protein	Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.	O.I.	C.G.	H.G.
13.0	99.4	56.9	At1g72290	843561	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.0	99.4	25.5	At3g15270	820758	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
13.0	99.4	13.7	At5g22980	832362	scpl47 (serine carboxypeptidase-like 47)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
12.9	99.3	26.1	At2g22970	816828	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
12.8	99.3	97.4	At2g02850	814816	ARPN (PLANTACYANIN)	Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.	O.I.	C.G.	H.G.
12.7	99.3	43.3	At1g01600	839347	CYP86A4	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers.	O.I.	C.G.	H.G.
12.7	99.3	18.0	At4g39480	830103	CYP96A9 (CYTOCHROME P450 96 A9)	member of CYP96A	O.I.	C.G.	H.G.
12.6	99.3	77.9	At1g44970	841062	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
12.6	99.3	51.8	At3g10570	820222	CYP77A6	member of CYP77A	O.I.	C.G.	H.G.
12.5	99.3	75.9	At3g02310	821151	SEP2 (SEPALLATA 2)	MADS-box protein, binds K domain of AG in vivo	O.I.	C.G.	H.G.
12.5	99.3	36.9	At1g75880	843921	family II extracellular lipase 1 (EXL1)	F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM	O.I.	C.G.	H.G.
12.4	99.3	40.5	At2g42200	818820	SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.	O.I.	C.G.	H.G.
12.3	99.3	249.6	At3g15400	820779	ATA20	Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.	O.I.	C.G.	H.G.
12.3	99.3	127.0	At1g02205	837602	CER1 (ECERIFERUM 1)	Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.	O.I.	C.G.	H.G.
12.3	99.3	33.7	At1g31340	840023	RUB1 (RELATED TO UBIQUITIN 1)	Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.	O.I.	C.G.	H.G.
12.2	99.3	30.1	At1g13140	837871	CYP86C3	member of CYP86C	O.I.	C.G.	H.G.
12.0	99.3	213.2	At1g72260	843558	THI2.1 (THIONIN 2.1)	Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
12.0	99.3	34.4	At5g48210	834874	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.0	99.3	24.7	At1g03170	839563	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
12.0	99.3	15.6	At1g07450	837257	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
11.9	99.3	31.9	At5g43270	834345	SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)	member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the	O.I.	C.G.	H.G.
11.7	99.3	12.6	At1g21540	838755	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
11.6	99.3	224.0	At3g04290	819584	LTL1 (LI-TOLERANT LIPASE 1)	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
11.6	99.3	56.3	At2g39330	818518	JAL23 (JACALIN-RELATED LECTIN 23)	F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF	O.I.	C.G.	H.G.
11.6	99.3	39.2	At2g03740	814901	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA	O.I.	C.G.	H.G.
11.6	99.3	13.6	At1g72110	843542	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
11.4	99.3	287.1	At5g59310	836050	LTP4 (LIPID TRANSFER PROTEIN 4)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
11.4	99.3	53.2	At4g33790	829521	CER4 (ECERIFERUM 4)	Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.	O.I.	C.G.	H.G.
11.3	99.3	373.7	At1g24020	839014	MLP423 (MLP-LIKE PROTEIN 423)	F:unknown;P:response to biotic stimulus, defense response;C:membrane;PBO	O.I.	C.G.	H.G.
11.0	99.2	330.6	At4g39330	830088	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:apoplast;BOPFMAV	O.I.	C.G.	H.G.
10.8	99.2	174.8	At1g55260	841970	lipid binding	F:lipid binding;P:lipid transport;C:nucleus, anchored to membrane;PO	O.I.	C.G.	H.G.
10.8	99.2	58.9	At2g41650	818763	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.7	99.2	60.5	At4g24510	828553	CER2 (ECERIFERUM 2)	Involved in C28 to C30 fatty acid elongation.	O.I.	C.G.	H.G.
10.7	99.2	7.1	At3g50890	824253	AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
10.6	99.2	212.5	At4g23680	828468	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.6	99.2	138.0	At1g72970	843628	HTH (HOTHEAD)	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	O.I.	C.G.	H.G.
10.6	99.2	72.1	At3g54340	824601	AP3 (APETALA 3)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.	O.I.	C.G.	H.G.
10.6	99.2	50.3	At1g49430	841367	LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2)	Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.	O.I.	C.G.	H.G.
10.5	99.2	66.7	At1g33430	840236	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPO	O.I.	C.G.	H.G.
10.2	99.2	39.5	At3g55290	824695	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAV	O.I.	C.G.	H.G.
10.2	99.2	14.7	At1g62540	842551	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
10.1	99.2	75.7	At5g62080	836328	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
10.1	99.2	34.0	At5g16960	831559	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPA	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM47049
Assay name	Col-0 39
GSE experiment	GSE2473: Small RNA biogenesis mutants

Microarray experiments to specifically-expressed genes

GSM ID GSM47049 Assay name Col-0 39 GSE experiment GSE2473: Small RNA biogenesis mutants

GSM ID GSM47049

Assay name Col-0 39

GSE experiment GSE2473: Small RNA biogenesis mutants