CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM47019

Assay name Ler 9

GSE experiment GSE2473: Small RNA biogenesis mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
262.3 100.0 161.1 At5g48210 834874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
219.8 100.0 51.5 At2g18420 816357 - Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein O.I. C.G. H.G.
199.8 100.0 304.0 At1g67990 843127 TSM1 Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting. O.I. C.G. H.G.
197.3 100.0 114.1 At1g75920 843925 family II extracellular lipase 5 (EXL5) F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM O.I. C.G. H.G.
194.3 100.0 151.1 At1g30020 839881 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
193.7 100.0 160.3 At2g03740 814901 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA O.I. C.G. H.G.
172.9 100.0 89.4 At5g65205 836644 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
169.7 100.0 116.8 At1g28375 839734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
151.0 99.9 188.5 At1g06260 837137 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
146.9 99.9 35.0 At1g26710 839212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
140.0 99.9 243.0 At1g33430 840236 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPO O.I. C.G. H.G.
124.0 99.9 269.0 At1g75910 843924 EXL4 member of Lipase proteins O.I. C.G. H.G.
108.7 99.9 339.9 At3g51590 824322 LTP12 (LIPID TRANSFER PROTEIN 12) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
103.3 99.9 242.6 At5g62080 836328 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
102.8 99.9 90.5 At4g14815 827138 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
101.7 99.9 86.9 At1g13140 837871 CYP86C3 member of CYP86C O.I. C.G. H.G.
96.5 99.9 128.5 At4g28395 828956 ATA7 related to lipid transfer proteins O.I. C.G. H.G.
95.5 99.9 88.0 At3g26125 822212 CYP86C2 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
94.5 99.9 44.2 At1g75580 843893 auxin-responsive protein, putative F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
92.3 99.9 208.3 At3g25050 822096 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment. O.I. C.G. H.G.
85.8 99.9 120.3 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
84.7 99.9 98.2 At5g16960 831559 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPA O.I. C.G. H.G.
83.8 99.9 251.0 At1g68875 843220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
82.4 99.9 272.1 At1g75940 843927 ATA27 encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen. O.I. C.G. H.G.
81.1 99.9 77.7 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
80.3 99.9 121.2 At2g03850 814911 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA O.I. C.G. H.G.
78.6 99.9 108.9 At1g02813 839360 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
77.1 99.9 211.3 At1g75930 843926 EXL6 member of Lipase proteins O.I. C.G. H.G.
69.0 99.9 80.5 At5g16920 831555 - F:molecular_function unknown;P:unknown;C:endomembrane system;PO O.I. C.G. H.G.
66.9 99.8 75.6 At1g69500 843283 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV O.I. C.G. H.G.
64.7 99.8 72.4 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. O.I. C.G. H.G.
63.7 99.8 86.6 At5g15800 831436 SEP1 (SEPALLATA1) Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3. O.I. C.G. H.G.
60.4 99.8 159.7 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
59.5 99.8 124.4 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. O.I. C.G. H.G.
59.5 99.8 74.2 At1g20120 838601 family II extracellular lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV O.I. C.G. H.G.
57.6 99.8 21.1 At1g06990 837209 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
55.7 99.8 83.2 At3g57810 824950 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:unknown;MPOF O.I. C.G. H.G.
53.5 99.8 246.3 At5g20240 832146 PI (PISTILLATA) Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities. O.I. C.G. H.G.
52.9 99.8 20.2 At1g06250 837135 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMV O.I. C.G. H.G.
52.8 99.8 76.9 At5g52160 835292 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
50.9 99.8 99.5 At3g11480 820321 BSMT1 The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism. O.I. C.G. H.G.
48.5 99.8 28.0 At1g75790 843912 sks18 (SKU5 Similar 18) F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
47.1 99.8 126.6 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO O.I. C.G. H.G.
46.3 99.8 41.2 At1g08065 837324 ACA5 (ALPHA CARBONIC ANHYDRASE 5) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFV O.I. C.G. H.G.
46.1 99.8 27.2 At1g71160 843456 KCS7 (3-KETOACYL-COA SYNTHASE 7) Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
45.1 99.8 68.6 At3g59530 825122 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFA O.I. C.G. H.G.
44.9 99.8 74.7 At1g68540 843183 oxidoreductase family protein F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
44.6 99.8 48.1 At5g55700 835664 BAM4 (BETA-AMYLASE 4) In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role. O.I. C.G. H.G.
43.5 99.8 263.2 At5g22430 832304 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
43.4 99.8 164.8 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
41.2 99.8 68.9 At1g75030 843841 ATLP-3 encodes a PR5-like protein O.I. C.G. H.G.
40.6 99.8 110.8 At1g24260 839040 SEP3 (SEPALLATA3) Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. O.I. C.G. H.G.
40.3 99.8 18.2 At5g25570 832632 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.2 99.8 22.9 At5g60500 836171 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein F:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP O.I. C.G. H.G.
39.8 99.8 52.8 At5g53190 835400 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO O.I. C.G. H.G.
38.9 99.8 132.1 At5g59845 836106 gibberellin-regulated family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
38.9 99.8 69.3 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. O.I. C.G. H.G.
38.7 99.8 14.6 At5g49120 834971 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBV O.I. C.G. H.G.
37.8 99.8 14.9 At3g58000 824969 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.7 99.7 379.3 At5g07550 830648 GRP19 (GLYCINE-RICH PROTEIN 19) member of Oleosin-like protein family O.I. C.G. H.G.
37.1 99.7 217.6 At5g24420 832513 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
36.5 99.7 403.7 At1g66850 843003 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
36.2 99.7 42.4 At4g10850 826682 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
35.7 99.7 117.3 At1g15260 838093 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
35.5 99.7 37.8 At5g15310 831383 ATMYB16 (MYB DOMAIN PROTEIN 16) Member of the R2R3 factor gene family. O.I. C.G. H.G.
35.4 99.7 12.7 At1g23250 838934 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
34.5 99.7 39.5 At4g14695 827120 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. C.G. H.G.
33.9 99.7 13.6 At5g62320 836353 ATMYB99 (MYB DOMAIN PROTEIN 99) Encodes a putative transcription factor (MYB99). O.I. C.G. H.G.
33.6 99.7 46.4 At1g07340 837245 ATSTP2 (SUGAR TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity;P:pollen development, monosaccharide transport;C:integral to plasma membrane, membrane;FBMPOA O.I. C.G. H.G.
33.5 99.7 124.1 At3g02310 821151 SEP2 (SEPALLATA 2) MADS-box protein, binds K domain of AG in vivo O.I. C.G. H.G.
32.7 99.7 41.5 At1g24600 839074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.7 99.7 95.1 At5g40260 834024 nodulin MtN3 family protein F:unknown;P:pollen wall assembly;C:plasma membrane, membrane;PMOB O.I. C.G. H.G.
31.2 99.7 113.6 At5g07230 830614 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
30.8 99.7 16.8 At1g23590 838969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.6 99.7 33.8 At1g16705 838241 p300/CBP acetyltransferase-related protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.9 99.7 30.8 At5g60400 836162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
28.8 99.7 26.4 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
28.6 99.7 22.1 At2g16210 816118 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
28.0 99.7 46.1 At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P O.I. C.G. H.G.
28.0 99.7 39.4 At1g49740 841397 phospholipase C/ phosphoric diester hydrolase F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM O.I. C.G. H.G.
27.8 99.7 52.1 At1g76470 843980 3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAV O.I. C.G. H.G.
27.4 99.7 112.3 At2g43520 818953 ATTI2 Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family. O.I. C.G. H.G.
27.3 99.7 78.2 At4g16442 827339 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.2 99.7 39.0 At1g23570 838967 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.2 99.7 82.4 At1g69120 843244 AP1 (APETALA1) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24. O.I. C.G. H.G.
26.1 99.7 56.7 At4g22753 828373 SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. O.I. C.G. H.G.
26.0 99.7 27.2 At1g22015 838806 DD46 F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOF O.I. C.G. H.G.
25.4 99.6 52.7 At5g06190 830506 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
25.3 99.6 69.1 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
25.3 99.6 37.2 At1g12350 837789 ATCOAB (4-phospho-panto-thenoylcysteine synthetase) At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4�-phospho-N-pantothenoylcysteine (PPC) O.I. C.G. H.G.
24.8 99.6 68.8 At4g35420 829695 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAV O.I. C.G. H.G.
24.4 99.6 52.0 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
24.4 99.6 48.5 At3g11980 820372 MS2 (MALE STERILITY 2) Similar to fatty acid reductases. O.I. C.G. H.G.
24.1 99.6 108.7 At5g10400 830904 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
23.5 99.6 26.8 At5g66550 836787 Maf family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
23.5 99.6 10.5 At2g23060 816836 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PAOBM O.I. C.G. H.G.
23.4 99.6 43.9 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. O.I. C.G. H.G.
23.3 99.6 43.1 At3g18960 821429 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
22.7 99.6 67.4 At2g38820 818464 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
22.5 99.6 112.1 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
262.3	100.0	161.1	At5g48210	834874	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
219.8	100.0	51.5	At2g18420	816357	-	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	O.I.	C.G.	H.G.
199.8	100.0	304.0	At1g67990	843127	TSM1	Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.	O.I.	C.G.	H.G.
197.3	100.0	114.1	At1g75920	843925	family II extracellular lipase 5 (EXL5)	F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM	O.I.	C.G.	H.G.
194.3	100.0	151.1	At1g30020	839881	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
193.7	100.0	160.3	At2g03740	814901	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA	O.I.	C.G.	H.G.
172.9	100.0	89.4	At5g65205	836644	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
169.7	100.0	116.8	At1g28375	839734	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
151.0	99.9	188.5	At1g06260	837137	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
146.9	99.9	35.0	At1g26710	839212	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
140.0	99.9	243.0	At1g33430	840236	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPO	O.I.	C.G.	H.G.
124.0	99.9	269.0	At1g75910	843924	EXL4	member of Lipase proteins	O.I.	C.G.	H.G.
108.7	99.9	339.9	At3g51590	824322	LTP12 (LIPID TRANSFER PROTEIN 12)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
103.3	99.9	242.6	At5g62080	836328	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
102.8	99.9	90.5	At4g14815	827138	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
101.7	99.9	86.9	At1g13140	837871	CYP86C3	member of CYP86C	O.I.	C.G.	H.G.
96.5	99.9	128.5	At4g28395	828956	ATA7	related to lipid transfer proteins	O.I.	C.G.	H.G.
95.5	99.9	88.0	At3g26125	822212	CYP86C2	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
94.5	99.9	44.2	At1g75580	843893	auxin-responsive protein, putative	F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
92.3	99.9	208.3	At3g25050	822096	XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)	encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.	O.I.	C.G.	H.G.
85.8	99.9	120.3	At3g07450	819933	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
84.7	99.9	98.2	At5g16960	831559	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPA	O.I.	C.G.	H.G.
83.8	99.9	251.0	At1g68875	843220	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
82.4	99.9	272.1	At1g75940	843927	ATA27	encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.	O.I.	C.G.	H.G.
81.1	99.9	77.7	At5g55720	835666	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
80.3	99.9	121.2	At2g03850	814911	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA	O.I.	C.G.	H.G.
78.6	99.9	108.9	At1g02813	839360	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
77.1	99.9	211.3	At1g75930	843926	EXL6	member of Lipase proteins	O.I.	C.G.	H.G.
69.0	99.9	80.5	At5g16920	831555	-	F:molecular_function unknown;P:unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
66.9	99.8	75.6	At1g69500	843283	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV	O.I.	C.G.	H.G.
64.7	99.8	72.4	At1g62940	842596	ACOS5 (ACYL-COA SYNTHETASE 5)	encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.	O.I.	C.G.	H.G.
63.7	99.8	86.6	At5g15800	831436	SEP1 (SEPALLATA1)	Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.	O.I.	C.G.	H.G.
60.4	99.8	159.7	At4g20420	827790	tapetum-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
59.5	99.8	124.4	At1g58430	842212	RXF26	Encodes an anther-specific proline-rich protein.	O.I.	C.G.	H.G.
59.5	99.8	74.2	At1g20120	838601	family II extracellular lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV	O.I.	C.G.	H.G.
57.6	99.8	21.1	At1g06990	837209	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
55.7	99.8	83.2	At3g57810	824950	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
53.5	99.8	246.3	At5g20240	832146	PI (PISTILLATA)	Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.	O.I.	C.G.	H.G.
52.9	99.8	20.2	At1g06250	837135	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMV	O.I.	C.G.	H.G.
52.8	99.8	76.9	At5g52160	835292	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
50.9	99.8	99.5	At3g11480	820321	BSMT1	The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.	O.I.	C.G.	H.G.
48.5	99.8	28.0	At1g75790	843912	sks18 (SKU5 Similar 18)	F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
47.1	99.8	126.6	At1g23240	838933	caleosin-related family protein	F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO	O.I.	C.G.	H.G.
46.3	99.8	41.2	At1g08065	837324	ACA5 (ALPHA CARBONIC ANHYDRASE 5)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFV	O.I.	C.G.	H.G.
46.1	99.8	27.2	At1g71160	843456	KCS7 (3-KETOACYL-COA SYNTHASE 7)	Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
45.1	99.8	68.6	At3g59530	825122	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFA	O.I.	C.G.	H.G.
44.9	99.8	74.7	At1g68540	843183	oxidoreductase family protein	F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
44.6	99.8	48.1	At5g55700	835664	BAM4 (BETA-AMYLASE 4)	In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role.	O.I.	C.G.	H.G.
43.5	99.8	263.2	At5g22430	832304	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
43.4	99.8	164.8	At2g33810	817948	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
41.2	99.8	68.9	At1g75030	843841	ATLP-3	encodes a PR5-like protein	O.I.	C.G.	H.G.
40.6	99.8	110.8	At1g24260	839040	SEP3 (SEPALLATA3)	Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.	O.I.	C.G.	H.G.
40.3	99.8	18.2	At5g25570	832632	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.2	99.8	22.9	At5g60500	836171	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	F:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP	O.I.	C.G.	H.G.
39.8	99.8	52.8	At5g53190	835400	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
38.9	99.8	132.1	At5g59845	836106	gibberellin-regulated family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
38.9	99.8	69.3	At2g32765	817837	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.	O.I.	C.G.	H.G.
38.7	99.8	14.6	At5g49120	834971	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBV	O.I.	C.G.	H.G.
37.8	99.8	14.9	At3g58000	824969	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.7	99.7	379.3	At5g07550	830648	GRP19 (GLYCINE-RICH PROTEIN 19)	member of Oleosin-like protein family	O.I.	C.G.	H.G.
37.1	99.7	217.6	At5g24420	832513	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
36.5	99.7	403.7	At1g66850	843003	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
36.2	99.7	42.4	At4g10850	826682	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
35.7	99.7	117.3	At1g15260	838093	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
35.5	99.7	37.8	At5g15310	831383	ATMYB16 (MYB DOMAIN PROTEIN 16)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
35.4	99.7	12.7	At1g23250	838934	calcium ion binding	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
34.5	99.7	39.5	At4g14695	827120	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;MFPO	O.I.	C.G.	H.G.
33.9	99.7	13.6	At5g62320	836353	ATMYB99 (MYB DOMAIN PROTEIN 99)	Encodes a putative transcription factor (MYB99).	O.I.	C.G.	H.G.
33.6	99.7	46.4	At1g07340	837245	ATSTP2 (SUGAR TRANSPORTER 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity;P:pollen development, monosaccharide transport;C:integral to plasma membrane, membrane;FBMPOA	O.I.	C.G.	H.G.
33.5	99.7	124.1	At3g02310	821151	SEP2 (SEPALLATA 2)	MADS-box protein, binds K domain of AG in vivo	O.I.	C.G.	H.G.
32.7	99.7	41.5	At1g24600	839074	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.7	99.7	95.1	At5g40260	834024	nodulin MtN3 family protein	F:unknown;P:pollen wall assembly;C:plasma membrane, membrane;PMOB	O.I.	C.G.	H.G.
31.2	99.7	113.6	At5g07230	830614	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
30.8	99.7	16.8	At1g23590	838969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.6	99.7	33.8	At1g16705	838241	p300/CBP acetyltransferase-related protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.9	99.7	30.8	At5g60400	836162	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
28.8	99.7	26.4	At5g45960	834636	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
28.6	99.7	22.1	At2g16210	816118	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.0	99.7	46.1	At3g20450	821590	-	F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P	O.I.	C.G.	H.G.
28.0	99.7	39.4	At1g49740	841397	phospholipase C/ phosphoric diester hydrolase	F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM	O.I.	C.G.	H.G.
27.8	99.7	52.1	At1g76470	843980	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAV	O.I.	C.G.	H.G.
27.4	99.7	112.3	At2g43520	818953	ATTI2	Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family.	O.I.	C.G.	H.G.
27.3	99.7	78.2	At4g16442	827339	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.2	99.7	39.0	At1g23570	838967	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.2	99.7	82.4	At1g69120	843244	AP1 (APETALA1)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	O.I.	C.G.	H.G.
26.1	99.7	56.7	At4g22753	828373	SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases.	O.I.	C.G.	H.G.
26.0	99.7	27.2	At1g22015	838806	DD46	F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOF	O.I.	C.G.	H.G.
25.4	99.6	52.7	At5g06190	830506	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
25.3	99.6	69.1	At1g53160	841749	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
25.3	99.6	37.2	At1g12350	837789	ATCOAB (4-phospho-panto-thenoylcysteine synthetase)	At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4�-phospho-N-pantothenoylcysteine (PPC)	O.I.	C.G.	H.G.
24.8	99.6	68.8	At4g35420	829695	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAV	O.I.	C.G.	H.G.
24.4	99.6	52.0	At2g21195	816656	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.4	99.6	48.5	At3g11980	820372	MS2 (MALE STERILITY 2)	Similar to fatty acid reductases.	O.I.	C.G.	H.G.
24.1	99.6	108.7	At5g10400	830904	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
23.5	99.6	26.8	At5g66550	836787	Maf family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
23.5	99.6	10.5	At2g23060	816836	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PAOBM	O.I.	C.G.	H.G.
23.4	99.6	43.9	At1g63710	842675	CYP86A7	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers.	O.I.	C.G.	H.G.
23.3	99.6	43.1	At3g18960	821429	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.7	99.6	67.4	At2g38820	818464	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
22.5	99.6	112.1	At1g52410	841671	TSA1 (TSK-ASSOCIATING PROTEIN 1)	Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM47019
Assay name	Ler 9
GSE experiment	GSE2473: Small RNA biogenesis mutants

Microarray experiments to specifically-expressed genes

GSM ID GSM47019 Assay name Ler 9 GSE experiment GSE2473: Small RNA biogenesis mutants

GSM ID GSM47019

Assay name Ler 9

GSE experiment GSE2473: Small RNA biogenesis mutants