CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM431930

Assay name Root- +Fe-P biological rep2

GSE experiment GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
135.3 100.0 58.2 Os04g0538400 AK108230.1 - Nodulin 21 (N-21) 9e-3 At3g43660 nodulin, putative O.I. C.G. H.G.
57.6 99.9 3.0 Os04g0567200 AK110383.1 - Protein of unknown function UPF0005 family protein 3e-4 At4g17970 unknown protein O.I. C.G. H.G.
42.7 99.9 20.5 Os03g0277600 AK061425.1 - Protein of unknown function DUF26 domaincontaining protein 2e+0 At2g33310 IAA13 O.I. C.G. H.G.
40.6 99.9 8.7 Os04g0127200 AK100128.1 - Subtilase 5e-3 At4g10510 subtilase family protein O.I. C.G. H.G.
39.3 99.9 5.0 Os04g0686800 CB965066 - Nodulin-lile protein 9e-2 At1g23660 unknown protein O.I. C.G. H.G.
38.7 99.8 28.3 Os03g0247200 AK121719.1 - Hypothetical protein 6e+0 At4g09960 STK (SEEDSTICK) O.I. C.G. H.G.
37.0 99.8 5.7 Os01g0588100 9629.m03872 - - 5e-1 At2g22800 HAT9 O.I. C.G. H.G.
35.4 99.8 1.5 Os03g0369000 AK064619.1 - Peroxidase 1e-2 At4g33420 peroxidase, putative O.I. C.G. H.G.
34.9 99.8 9.4 Os02g0582600 AK102380.1 - Heavy metal transport/detoxification proteindomain containing protein 6e-1 At1g49715 - O.I. C.G. H.G.
32.5 99.8 7.3 Os04g0627300 9632.m05198 - Conserved hypothetical protein 3e-2 At5g60680 unknown protein O.I. C.G. H.G.
32.2 99.7 3.3 Os07g0593000 AK063147.1 - Zn-finger, C2H2 type domain containing protein 4e-1 At5g10970 zinc finger (C2H2 type) family protein O.I. C.G. H.G.
31.8 99.7 0.9 Os11g0225000 AK062328.1 - Serine/threonine protein kinase domain containingprotein 1e+0 At5g13900 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. C.G. H.G.
31.2 99.7 0.1 Os04g0127100 AK108388.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e+0 At3g01980 short-chain dehydrogenase/reductase (SDR) family protein O.I. C.G. H.G.
30.4 99.7 4.2 Os11g0508600 AK101913.1 - MtN3 protein precursor 8e-7 At5g23660 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) O.I. C.G. H.G.
29.8 99.7 0.4 Os07g0531200 AK111249.1 - Conserved hypothetical protein 4e-1 At5g28420 unknown protein O.I. C.G. H.G.
26.6 99.5 10.1 Os02g0120100 AK103704.1 - Amino acid-binding ACT domain containing protein 7e-5 At4g35780 protein kinase family protein O.I. C.G. H.G.
26.5 99.5 2.7 Os05g0361500 AK100947.1 - Pectinesterase family protein 2e-5 At1g02810 pectinesterase family protein O.I. C.G. H.G.
26.5 99.5 1.7 Os02g0318100 9630.m02042 - Alternative oxidase 1a (Fragment) 4e-2 At3g22360 AOX1B O.I. C.G. H.G.
25.7 99.5 3.3 Os12g0432600 AK108851.1 - Zn-finger, RING domain containing protein 2e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) O.I. C.G. H.G.
25.5 99.5 0.2 Os11g0666100 AK109326.1 - Hypothetical protein 6e+0 At4g00950 MEE47 (maternal effect embryo arrest 47) O.I. C.G. H.G.
25.2 99.5 2.9 Os05g0561300 9633.m04557 - - 7e+0 At4g19550 transcription regulator/ zinc ion binding O.I. C.G. H.G.
24.9 99.5 1.9 Os08g0519100 AK063287.1 - Plant-specific FAD-dependent oxidoreductase familyprotein 9e-1 At2g35640 hydroxyproline-rich glycoprotein family protein O.I. C.G. H.G.
24.8 99.5 0.9 Os08g0203300 AK065548.1 - Protein kinase domain containing protein 7e-3 At1g53420 serine/threonine protein kinase-related O.I. C.G. H.G.
24.5 99.4 80.5 Os10g0547500 AK070040.1 - Conserved hypothetical protein 7e-5 At1g02260 transmembrane protein, putative O.I. C.G. H.G.
24.3 99.4 1.2 Os06g0542300 9634.m03314 - Heavy metal transport/detoxification proteindomain containing protein 3e-2 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. C.G. H.G.
24.1 99.4 2.3 Os08g0230600 AK111371.1 - Zn-binding protein, LIM domain containing protein 3e-1 At4g16195 self-incompatibility protein-related O.I. C.G. H.G.
24.0 99.4 0.9 Os06g0297500 BM038601 - Hypothetical protein 1e+0 At5g55120 VTC5 (VITAMIN C DEFECTIVE 5) O.I. C.G. H.G.
23.8 99.4 38.2 Os10g0109600 D14481.1 - Peroxidase (EC 1.11.1.7) 3e-3 At3g50990 electron carrier/ heme binding / peroxidase O.I. C.G. H.G.
23.8 99.4 21.4 Os01g0916100 CB645166 - Conserved hypothetical protein 4e-2 At1g67570 unknown protein O.I. C.G. H.G.
23.5 99.4 13.1 Os04g0468600 AK102569.1 - Conserved hypothetical protein 2e+0 At2g05910 unknown protein O.I. C.G. H.G.
23.4 99.4 33.8 Os12g0581900 AK066117.1 - Zn-finger, C2H2 type domain containing protein 8e-3 At5g06650 GIS2 (GLABROUS INFLORESCENCE STEMS 2) O.I. C.G. H.G.
23.4 99.4 22.9 Os03g0734000 AK064264.1 - Conserved hypothetical protein 6e+0 At3g19660 unknown protein O.I. C.G. H.G.
23.3 99.4 1.9 Os08g0523600 AK063901.1 - CTV.22 9e-1 At1g63960 unknown protein O.I. C.G. H.G.
23.2 99.3 21.9 Os03g0339900 AK062464.1 - Serine/threonine protein kinase 8e-6 At1g30270 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) O.I. C.G. H.G.
23.0 99.3 14.8 Os12g0425800 AK071086.1 - Hypothetical protein 2e+0 At2g17560 HMGB4 (HIGH MOBILITY GROUP B 4) O.I. C.G. H.G.
23.0 99.3 2.1 Os02g0734800 AK109142.1 - Protein of unknown function DUF26 domaincontaining protein 1e-1 At5g18400 unknown protein O.I. C.G. H.G.
22.4 99.3 6.8 Os06g0535200 AK109943.1 - Zn-finger, RING domain containing protein 2e+0 At5g26890 unknown protein O.I. C.G. H.G.
21.4 99.2 7.6 Os02g0782900 AK062387.1 - Conserved hypothetical protein 3e-1 At1g51400 photosystem II 5 kD protein O.I. C.G. H.G.
21.2 99.2 4.5 Os07g0674500 AK107802.1 - Conserved hypothetical protein 1e+0 At5g08060 unknown protein O.I. C.G. H.G.
20.8 99.2 5.8 Os06g0159600 AK068486.1 - - 3e+0 At5g61720 unknown protein O.I. C.G. H.G.
20.8 99.2 1.9 Os07g0680400 AK110900.1 - DNA-binding WRKY domain containing protein 1e-3 At2g30250 WRKY25 O.I. C.G. H.G.
20.6 99.1 5.2 Os06g0193300 AK062548.1 - Conserved hypothetical protein 2e-2 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) O.I. C.G. H.G.
20.3 99.1 0.8 Os03g0401900 AK120311.1 - Conserved hypothetical protein 1e+0 At5g01880 zinc finger (C3HC4-type RING finger) family protein O.I. C.G. H.G.
20.1 99.1 5.7 Os10g0210500 AK062163.1 - Protein of unknown function DUF6 domain containingprotein 1e+0 At1g44800 nodulin MtN21 family protein O.I. C.G. H.G.
19.6 99.1 6.1 Os06g0136900 AK107405.1 - Protein of unknown function DUF296 domaincontaining protein 7e-4 At4g17800 DNA-binding protein-related O.I. C.G. H.G.
19.2 99.0 0.4 Os05g0443900 AK109520.1 - Basic leucine zipper protein (Liguleless2) 2e-4 At5g06839 bZIP family transcription factor O.I. C.G. H.G.
19.1 99.0 98.8 Os02g0582900 AK109082.1 - Conotoxin family protein 3e-2 At5g55210 unknown protein O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
135.3	100.0	58.2	Os04g0538400	AK108230.1	-	Nodulin 21 (N-21)	9e-3	At3g43660	nodulin, putative	O.I.	C.G.	H.G.
57.6	99.9	3.0	Os04g0567200	AK110383.1	-	Protein of unknown function UPF0005 family protein	3e-4	At4g17970	unknown protein	O.I.	C.G.	H.G.
42.7	99.9	20.5	Os03g0277600	AK061425.1	-	Protein of unknown function DUF26 domaincontaining protein	2e+0	At2g33310	IAA13	O.I.	C.G.	H.G.
40.6	99.9	8.7	Os04g0127200	AK100128.1	-	Subtilase	5e-3	At4g10510	subtilase family protein	O.I.	C.G.	H.G.
39.3	99.9	5.0	Os04g0686800	CB965066	-	Nodulin-lile protein	9e-2	At1g23660	unknown protein	O.I.	C.G.	H.G.
38.7	99.8	28.3	Os03g0247200	AK121719.1	-	Hypothetical protein	6e+0	At4g09960	STK (SEEDSTICK)	O.I.	C.G.	H.G.
37.0	99.8	5.7	Os01g0588100	9629.m03872	-	-	5e-1	At2g22800	HAT9	O.I.	C.G.	H.G.
35.4	99.8	1.5	Os03g0369000	AK064619.1	-	Peroxidase	1e-2	At4g33420	peroxidase, putative	O.I.	C.G.	H.G.
34.9	99.8	9.4	Os02g0582600	AK102380.1	-	Heavy metal transport/detoxification proteindomain containing protein	6e-1	At1g49715	-	O.I.	C.G.	H.G.
32.5	99.8	7.3	Os04g0627300	9632.m05198	-	Conserved hypothetical protein	3e-2	At5g60680	unknown protein	O.I.	C.G.	H.G.
32.2	99.7	3.3	Os07g0593000	AK063147.1	-	Zn-finger, C2H2 type domain containing protein	4e-1	At5g10970	zinc finger (C2H2 type) family protein	O.I.	C.G.	H.G.
31.8	99.7	0.9	Os11g0225000	AK062328.1	-	Serine/threonine protein kinase domain containingprotein	1e+0	At5g13900	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	C.G.	H.G.
31.2	99.7	0.1	Os04g0127100	AK108388.1	-	Proteinase inhibitor I9, subtilisin propeptidedomain containing protein	1e+0	At3g01980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	C.G.	H.G.
30.4	99.7	4.2	Os11g0508600	AK101913.1	-	MtN3 protein precursor	8e-7	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	C.G.	H.G.
29.8	99.7	0.4	Os07g0531200	AK111249.1	-	Conserved hypothetical protein	4e-1	At5g28420	unknown protein	O.I.	C.G.	H.G.
26.6	99.5	10.1	Os02g0120100	AK103704.1	-	Amino acid-binding ACT domain containing protein	7e-5	At4g35780	protein kinase family protein	O.I.	C.G.	H.G.
26.5	99.5	2.7	Os05g0361500	AK100947.1	-	Pectinesterase family protein	2e-5	At1g02810	pectinesterase family protein	O.I.	C.G.	H.G.
26.5	99.5	1.7	Os02g0318100	9630.m02042	-	Alternative oxidase 1a (Fragment)	4e-2	At3g22360	AOX1B	O.I.	C.G.	H.G.
25.7	99.5	3.3	Os12g0432600	AK108851.1	-	Zn-finger, RING domain containing protein	2e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	O.I.	C.G.	H.G.
25.5	99.5	0.2	Os11g0666100	AK109326.1	-	Hypothetical protein	6e+0	At4g00950	MEE47 (maternal effect embryo arrest 47)	O.I.	C.G.	H.G.
25.2	99.5	2.9	Os05g0561300	9633.m04557	-	-	7e+0	At4g19550	transcription regulator/ zinc ion binding	O.I.	C.G.	H.G.
24.9	99.5	1.9	Os08g0519100	AK063287.1	-	Plant-specific FAD-dependent oxidoreductase familyprotein	9e-1	At2g35640	hydroxyproline-rich glycoprotein family protein	O.I.	C.G.	H.G.
24.8	99.5	0.9	Os08g0203300	AK065548.1	-	Protein kinase domain containing protein	7e-3	At1g53420	serine/threonine protein kinase-related	O.I.	C.G.	H.G.
24.5	99.4	80.5	Os10g0547500	AK070040.1	-	Conserved hypothetical protein	7e-5	At1g02260	transmembrane protein, putative	O.I.	C.G.	H.G.
24.3	99.4	1.2	Os06g0542300	9634.m03314	-	Heavy metal transport/detoxification proteindomain containing protein	3e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	C.G.	H.G.
24.1	99.4	2.3	Os08g0230600	AK111371.1	-	Zn-binding protein, LIM domain containing protein	3e-1	At4g16195	self-incompatibility protein-related	O.I.	C.G.	H.G.
24.0	99.4	0.9	Os06g0297500	BM038601	-	Hypothetical protein	1e+0	At5g55120	VTC5 (VITAMIN C DEFECTIVE 5)	O.I.	C.G.	H.G.
23.8	99.4	38.2	Os10g0109600	D14481.1	-	Peroxidase (EC 1.11.1.7)	3e-3	At3g50990	electron carrier/ heme binding / peroxidase	O.I.	C.G.	H.G.
23.8	99.4	21.4	Os01g0916100	CB645166	-	Conserved hypothetical protein	4e-2	At1g67570	unknown protein	O.I.	C.G.	H.G.
23.5	99.4	13.1	Os04g0468600	AK102569.1	-	Conserved hypothetical protein	2e+0	At2g05910	unknown protein	O.I.	C.G.	H.G.
23.4	99.4	33.8	Os12g0581900	AK066117.1	-	Zn-finger, C2H2 type domain containing protein	8e-3	At5g06650	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	O.I.	C.G.	H.G.
23.4	99.4	22.9	Os03g0734000	AK064264.1	-	Conserved hypothetical protein	6e+0	At3g19660	unknown protein	O.I.	C.G.	H.G.
23.3	99.4	1.9	Os08g0523600	AK063901.1	-	CTV.22	9e-1	At1g63960	unknown protein	O.I.	C.G.	H.G.
23.2	99.3	21.9	Os03g0339900	AK062464.1	-	Serine/threonine protein kinase	8e-6	At1g30270	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	O.I.	C.G.	H.G.
23.0	99.3	14.8	Os12g0425800	AK071086.1	-	Hypothetical protein	2e+0	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	O.I.	C.G.	H.G.
23.0	99.3	2.1	Os02g0734800	AK109142.1	-	Protein of unknown function DUF26 domaincontaining protein	1e-1	At5g18400	unknown protein	O.I.	C.G.	H.G.
22.4	99.3	6.8	Os06g0535200	AK109943.1	-	Zn-finger, RING domain containing protein	2e+0	At5g26890	unknown protein	O.I.	C.G.	H.G.
21.4	99.2	7.6	Os02g0782900	AK062387.1	-	Conserved hypothetical protein	3e-1	At1g51400	photosystem II 5 kD protein	O.I.	C.G.	H.G.
21.2	99.2	4.5	Os07g0674500	AK107802.1	-	Conserved hypothetical protein	1e+0	At5g08060	unknown protein	O.I.	C.G.	H.G.
20.8	99.2	5.8	Os06g0159600	AK068486.1	-	-	3e+0	At5g61720	unknown protein	O.I.	C.G.	H.G.
20.8	99.2	1.9	Os07g0680400	AK110900.1	-	DNA-binding WRKY domain containing protein	1e-3	At2g30250	WRKY25	O.I.	C.G.	H.G.
20.6	99.1	5.2	Os06g0193300	AK062548.1	-	Conserved hypothetical protein	2e-2	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	C.G.	H.G.
20.3	99.1	0.8	Os03g0401900	AK120311.1	-	Conserved hypothetical protein	1e+0	At5g01880	zinc finger (C3HC4-type RING finger) family protein	O.I.	C.G.	H.G.
20.1	99.1	5.7	Os10g0210500	AK062163.1	-	Protein of unknown function DUF6 domain containingprotein	1e+0	At1g44800	nodulin MtN21 family protein	O.I.	C.G.	H.G.
19.6	99.1	6.1	Os06g0136900	AK107405.1	-	Protein of unknown function DUF296 domaincontaining protein	7e-4	At4g17800	DNA-binding protein-related	O.I.	C.G.	H.G.
19.2	99.0	0.4	Os05g0443900	AK109520.1	-	Basic leucine zipper protein (Liguleless2)	2e-4	At5g06839	bZIP family transcription factor	O.I.	C.G.	H.G.
19.1	99.0	98.8	Os02g0582900	AK109082.1	-	Conotoxin family protein	3e-2	At5g55210	unknown protein	O.I.	C.G.	H.G.

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GSM ID	GSM431930
Assay name	Root- +Fe-P biological rep2
GSE experiment	GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings

Microarray experiments to specifically-expressed genes

GSM ID GSM431930 Assay name Root- +Fe-P biological rep2 GSE experiment GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings

GSM ID GSM431930

Assay name Root- +Fe-P biological rep2

GSE experiment GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings