CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM431929

Assay name Root- +Fe-P biological rep1

GSE experiment GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
132.7 100.0 57.1 Os04g0538400 AK108230.1 - Nodulin 21 (N-21) 9e-3 At3g43660 nodulin, putative O.I. C.G. H.G.
64.2 99.9 3.4 Os04g0567200 AK110383.1 - Protein of unknown function UPF0005 family protein 3e-4 At4g17970 unknown protein O.I. C.G. H.G.
46.2 99.9 7.2 Os01g0588100 9629.m03872 - - 5e-1 At2g22800 HAT9 O.I. C.G. H.G.
42.2 99.9 5.3 Os04g0686800 CB965066 - Nodulin-lile protein 9e-2 At1g23660 unknown protein O.I. C.G. H.G.
40.9 99.9 19.6 Os03g0277600 AK061425.1 - Protein of unknown function DUF26 domaincontaining protein 2e+0 At2g33310 IAA13 O.I. C.G. H.G.
40.7 99.9 29.7 Os03g0247200 AK121719.1 - Hypothetical protein 6e+0 At4g09960 STK (SEEDSTICK) O.I. C.G. H.G.
39.8 99.9 8.6 Os04g0127200 AK100128.1 - Subtilase 5e-3 At4g10510 subtilase family protein O.I. C.G. H.G.
35.4 99.8 3.7 Os07g0593000 AK063147.1 - Zn-finger, C2H2 type domain containing protein 4e-1 At5g10970 zinc finger (C2H2 type) family protein O.I. C.G. H.G.
33.9 99.8 0.1 Os04g0127100 AK108388.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e+0 At3g01980 short-chain dehydrogenase/reductase (SDR) family protein O.I. C.G. H.G.
33.1 99.8 0.9 Os11g0225000 AK062328.1 - Serine/threonine protein kinase domain containingprotein 1e+0 At5g13900 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. C.G. H.G.
32.7 99.8 8.8 Os02g0582600 AK102380.1 - Heavy metal transport/detoxification proteindomain containing protein 6e-1 At1g49715 - O.I. C.G. H.G.
31.8 99.7 7.2 Os04g0627300 9632.m05198 - Conserved hypothetical protein 3e-2 At5g60680 unknown protein O.I. C.G. H.G.
30.6 99.7 1.3 Os03g0369000 AK064619.1 - Peroxidase 1e-2 At4g33420 peroxidase, putative O.I. C.G. H.G.
28.1 99.6 1.7 Os02g0318100 9630.m02042 - Alternative oxidase 1a (Fragment) 4e-2 At3g22360 AOX1B O.I. C.G. H.G.
28.0 99.6 0.4 Os07g0531200 AK111249.1 - Conserved hypothetical protein 4e-1 At5g28420 unknown protein O.I. C.G. H.G.
26.9 99.6 10.2 Os02g0120100 AK103704.1 - Amino acid-binding ACT domain containing protein 7e-5 At4g35780 protein kinase family protein O.I. C.G. H.G.
26.1 99.5 85.8 Os10g0547500 AK070040.1 - Conserved hypothetical protein 7e-5 At1g02260 transmembrane protein, putative O.I. C.G. H.G.
25.3 99.5 40.5 Os10g0109600 D14481.1 - Peroxidase (EC 1.11.1.7) 3e-3 At3g50990 electron carrier/ heme binding / peroxidase O.I. C.G. H.G.
24.8 99.5 3.5 Os11g0508600 AK101913.1 - MtN3 protein precursor 8e-7 At5g23660 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) O.I. C.G. H.G.
24.7 99.4 2.9 Os05g0561300 9633.m04557 - - 7e+0 At4g19550 transcription regulator/ zinc ion binding O.I. C.G. H.G.
24.4 99.4 21.9 Os01g0916100 CB645166 - Conserved hypothetical protein 4e-2 At1g67570 unknown protein O.I. C.G. H.G.
24.3 99.4 3.1 Os12g0432600 AK108851.1 - Zn-finger, RING domain containing protein 2e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) O.I. C.G. H.G.
24.2 99.4 1.9 Os08g0519100 AK063287.1 - Plant-specific FAD-dependent oxidoreductase familyprotein 9e-1 At2g35640 hydroxyproline-rich glycoprotein family protein O.I. C.G. H.G.
24.0 99.4 2.4 Os05g0361500 AK100947.1 - Pectinesterase family protein 2e-5 At1g02810 pectinesterase family protein O.I. C.G. H.G.
23.6 99.4 2.1 Os07g0680400 AK110900.1 - DNA-binding WRKY domain containing protein 1e-3 At2g30250 WRKY25 O.I. C.G. H.G.
23.5 99.4 15.2 Os12g0425800 AK071086.1 - Hypothetical protein 2e+0 At2g17560 HMGB4 (HIGH MOBILITY GROUP B 4) O.I. C.G. H.G.
23.5 99.4 3.5 Os10g0452100 AK063328.1 - Glycine-rich protein (Fragment) 4e-4 At1g75550 glycine-rich protein O.I. C.G. H.G.
22.9 99.3 4.8 Os07g0674500 AK107802.1 - Conserved hypothetical protein 1e+0 At5g08060 unknown protein O.I. C.G. H.G.
22.4 99.3 0.9 Os06g0297500 BM038601 - Hypothetical protein 1e+0 At5g55120 VTC5 (VITAMIN C DEFECTIVE 5) O.I. C.G. H.G.
22.1 99.3 21.6 Os03g0734000 AK064264.1 - Conserved hypothetical protein 6e+0 At3g19660 unknown protein O.I. C.G. H.G.
22.0 99.3 12.2 Os04g0468600 AK102569.1 - Conserved hypothetical protein 2e+0 At2g05910 unknown protein O.I. C.G. H.G.
21.6 99.2 20.3 Os03g0339900 AK062464.1 - Serine/threonine protein kinase 8e-6 At1g30270 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) O.I. C.G. H.G.
21.1 99.2 1.1 Os06g0542300 9634.m03314 - Heavy metal transport/detoxification proteindomain containing protein 3e-2 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. C.G. H.G.
20.7 99.2 5.8 Os10g0210500 AK062163.1 - Protein of unknown function DUF6 domain containingprotein 1e+0 At1g44800 nodulin MtN21 family protein O.I. C.G. H.G.
20.7 99.2 0.1 Os11g0666100 AK109326.1 - Hypothetical protein 6e+0 At4g00950 MEE47 (maternal effect embryo arrest 47) O.I. C.G. H.G.
20.6 99.1 2.0 Os08g0230600 AK111371.1 - Zn-binding protein, LIM domain containing protein 3e-1 At4g16195 self-incompatibility protein-related O.I. C.G. H.G.
20.0 99.1 28.9 Os12g0581900 AK066117.1 - Zn-finger, C2H2 type domain containing protein 8e-3 At5g06650 GIS2 (GLABROUS INFLORESCENCE STEMS 2) O.I. C.G. H.G.
20.0 99.1 1.1 Os07g0268800 AK065175.1 - Protein of unknown function DUF594 family protein 1e+0 At4g19080 unknown protein O.I. C.G. H.G.
19.2 99.0 0.8 Os03g0401900 AK120311.1 - Conserved hypothetical protein 1e+0 At5g01880 zinc finger (C3HC4-type RING finger) family protein O.I. C.G. H.G.
19.1 99.0 6.8 Os02g0782900 AK062387.1 - Conserved hypothetical protein 3e-1 At1g51400 photosystem II 5 kD protein O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
132.7	100.0	57.1	Os04g0538400	AK108230.1	-	Nodulin 21 (N-21)	9e-3	At3g43660	nodulin, putative	O.I.	C.G.	H.G.
64.2	99.9	3.4	Os04g0567200	AK110383.1	-	Protein of unknown function UPF0005 family protein	3e-4	At4g17970	unknown protein	O.I.	C.G.	H.G.
46.2	99.9	7.2	Os01g0588100	9629.m03872	-	-	5e-1	At2g22800	HAT9	O.I.	C.G.	H.G.
42.2	99.9	5.3	Os04g0686800	CB965066	-	Nodulin-lile protein	9e-2	At1g23660	unknown protein	O.I.	C.G.	H.G.
40.9	99.9	19.6	Os03g0277600	AK061425.1	-	Protein of unknown function DUF26 domaincontaining protein	2e+0	At2g33310	IAA13	O.I.	C.G.	H.G.
40.7	99.9	29.7	Os03g0247200	AK121719.1	-	Hypothetical protein	6e+0	At4g09960	STK (SEEDSTICK)	O.I.	C.G.	H.G.
39.8	99.9	8.6	Os04g0127200	AK100128.1	-	Subtilase	5e-3	At4g10510	subtilase family protein	O.I.	C.G.	H.G.
35.4	99.8	3.7	Os07g0593000	AK063147.1	-	Zn-finger, C2H2 type domain containing protein	4e-1	At5g10970	zinc finger (C2H2 type) family protein	O.I.	C.G.	H.G.
33.9	99.8	0.1	Os04g0127100	AK108388.1	-	Proteinase inhibitor I9, subtilisin propeptidedomain containing protein	1e+0	At3g01980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	C.G.	H.G.
33.1	99.8	0.9	Os11g0225000	AK062328.1	-	Serine/threonine protein kinase domain containingprotein	1e+0	At5g13900	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	C.G.	H.G.
32.7	99.8	8.8	Os02g0582600	AK102380.1	-	Heavy metal transport/detoxification proteindomain containing protein	6e-1	At1g49715	-	O.I.	C.G.	H.G.
31.8	99.7	7.2	Os04g0627300	9632.m05198	-	Conserved hypothetical protein	3e-2	At5g60680	unknown protein	O.I.	C.G.	H.G.
30.6	99.7	1.3	Os03g0369000	AK064619.1	-	Peroxidase	1e-2	At4g33420	peroxidase, putative	O.I.	C.G.	H.G.
28.1	99.6	1.7	Os02g0318100	9630.m02042	-	Alternative oxidase 1a (Fragment)	4e-2	At3g22360	AOX1B	O.I.	C.G.	H.G.
28.0	99.6	0.4	Os07g0531200	AK111249.1	-	Conserved hypothetical protein	4e-1	At5g28420	unknown protein	O.I.	C.G.	H.G.
26.9	99.6	10.2	Os02g0120100	AK103704.1	-	Amino acid-binding ACT domain containing protein	7e-5	At4g35780	protein kinase family protein	O.I.	C.G.	H.G.
26.1	99.5	85.8	Os10g0547500	AK070040.1	-	Conserved hypothetical protein	7e-5	At1g02260	transmembrane protein, putative	O.I.	C.G.	H.G.
25.3	99.5	40.5	Os10g0109600	D14481.1	-	Peroxidase (EC 1.11.1.7)	3e-3	At3g50990	electron carrier/ heme binding / peroxidase	O.I.	C.G.	H.G.
24.8	99.5	3.5	Os11g0508600	AK101913.1	-	MtN3 protein precursor	8e-7	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	C.G.	H.G.
24.7	99.4	2.9	Os05g0561300	9633.m04557	-	-	7e+0	At4g19550	transcription regulator/ zinc ion binding	O.I.	C.G.	H.G.
24.4	99.4	21.9	Os01g0916100	CB645166	-	Conserved hypothetical protein	4e-2	At1g67570	unknown protein	O.I.	C.G.	H.G.
24.3	99.4	3.1	Os12g0432600	AK108851.1	-	Zn-finger, RING domain containing protein	2e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	O.I.	C.G.	H.G.
24.2	99.4	1.9	Os08g0519100	AK063287.1	-	Plant-specific FAD-dependent oxidoreductase familyprotein	9e-1	At2g35640	hydroxyproline-rich glycoprotein family protein	O.I.	C.G.	H.G.
24.0	99.4	2.4	Os05g0361500	AK100947.1	-	Pectinesterase family protein	2e-5	At1g02810	pectinesterase family protein	O.I.	C.G.	H.G.
23.6	99.4	2.1	Os07g0680400	AK110900.1	-	DNA-binding WRKY domain containing protein	1e-3	At2g30250	WRKY25	O.I.	C.G.	H.G.
23.5	99.4	15.2	Os12g0425800	AK071086.1	-	Hypothetical protein	2e+0	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	O.I.	C.G.	H.G.
23.5	99.4	3.5	Os10g0452100	AK063328.1	-	Glycine-rich protein (Fragment)	4e-4	At1g75550	glycine-rich protein	O.I.	C.G.	H.G.
22.9	99.3	4.8	Os07g0674500	AK107802.1	-	Conserved hypothetical protein	1e+0	At5g08060	unknown protein	O.I.	C.G.	H.G.
22.4	99.3	0.9	Os06g0297500	BM038601	-	Hypothetical protein	1e+0	At5g55120	VTC5 (VITAMIN C DEFECTIVE 5)	O.I.	C.G.	H.G.
22.1	99.3	21.6	Os03g0734000	AK064264.1	-	Conserved hypothetical protein	6e+0	At3g19660	unknown protein	O.I.	C.G.	H.G.
22.0	99.3	12.2	Os04g0468600	AK102569.1	-	Conserved hypothetical protein	2e+0	At2g05910	unknown protein	O.I.	C.G.	H.G.
21.6	99.2	20.3	Os03g0339900	AK062464.1	-	Serine/threonine protein kinase	8e-6	At1g30270	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	O.I.	C.G.	H.G.
21.1	99.2	1.1	Os06g0542300	9634.m03314	-	Heavy metal transport/detoxification proteindomain containing protein	3e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	C.G.	H.G.
20.7	99.2	5.8	Os10g0210500	AK062163.1	-	Protein of unknown function DUF6 domain containingprotein	1e+0	At1g44800	nodulin MtN21 family protein	O.I.	C.G.	H.G.
20.7	99.2	0.1	Os11g0666100	AK109326.1	-	Hypothetical protein	6e+0	At4g00950	MEE47 (maternal effect embryo arrest 47)	O.I.	C.G.	H.G.
20.6	99.1	2.0	Os08g0230600	AK111371.1	-	Zn-binding protein, LIM domain containing protein	3e-1	At4g16195	self-incompatibility protein-related	O.I.	C.G.	H.G.
20.0	99.1	28.9	Os12g0581900	AK066117.1	-	Zn-finger, C2H2 type domain containing protein	8e-3	At5g06650	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	O.I.	C.G.	H.G.
20.0	99.1	1.1	Os07g0268800	AK065175.1	-	Protein of unknown function DUF594 family protein	1e+0	At4g19080	unknown protein	O.I.	C.G.	H.G.
19.2	99.0	0.8	Os03g0401900	AK120311.1	-	Conserved hypothetical protein	1e+0	At5g01880	zinc finger (C3HC4-type RING finger) family protein	O.I.	C.G.	H.G.
19.1	99.0	6.8	Os02g0782900	AK062387.1	-	Conserved hypothetical protein	3e-1	At1g51400	photosystem II 5 kD protein	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM431929
Assay name	Root- +Fe-P biological rep1
GSE experiment	GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings

Microarray experiments to specifically-expressed genes

GSM ID GSM431929 Assay name Root- +Fe-P biological rep1 GSE experiment GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings

GSM ID GSM431929

Assay name Root- +Fe-P biological rep1

GSE experiment GSE17245: Transcriptome analysis of iron and phosphorus interaction in rice seedlings