CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM409429

Assay name Nipponbare_young panicle 2cm, biological rep5

GSE experiment GSE16265: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
103.1 100.0 1.0 Os11g0227300 AK064544.1 - Conserved hypothetical protein 9e-1 At3g24690 - O.I. C.G. H.G.
53.5 99.9 5.2 Os12g0208900 9640.m01003 - ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein 4e-2 At1g69600 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) O.I. C.G. H.G.
49.1 99.9 8.1 Os05g0547600 AK102181.1 - Conserved hypothetical protein 2e+0 At3g53210 nodulin MtN21 family protein O.I. C.G. H.G.
48.8 99.9 0.4 Os04g0587900 AK108032.1 - Hypothetical protein 3e+0 At5g07230 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. C.G. H.G.
38.3 99.8 14.2 Os01g0327500 AK107756.1 - Conserved hypothetical protein 1e+0 At5g66170 - O.I. C.G. H.G.
35.5 99.8 35.6 Os06g0115700 AK073098.1 - Conserved hypothetical protein 1e-1 At1g12760 protein binding / ubiquitin-protein ligase/ zinc ion binding O.I. C.G. H.G.
34.2 99.8 17.6 Os06g0162800 U78890.1 - MADS box protein 6e-4 At1g24260 SEP3 (SEPALLATA3) O.I. C.G. H.G.
33.4 99.8 0.0 Os06g0688900 9634.m04623 - - 4e+0 At5g19510 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) O.I. C.G. H.G.
32.4 99.8 7.7 Os03g0110500 AK101157.1 - Conserved hypothetical protein 2e-1 At5g14690 unknown protein O.I. C.G. H.G.
32.2 99.7 17.0 Os06g0219500 AK064012.1 - Low molecular weight heat shock protein precursor 1e-2 At4g25200 ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) O.I. C.G. H.G.
31.5 99.7 33.8 Os08g0199400 AK105852.1 - Fatty acid desaturase, type 2 family protein 3e-3 At5g16230 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative O.I. C.G. H.G.
29.8 99.7 8.0 Os03g0800200 D42427 - Argonaute protein 3e-11 At2g27880 AGO5 (ARGONAUTE 5) O.I. C.G. H.G.
28.1 99.6 1.7 Os02g0492900 AK110813.1 - Ankyrin-like protein-like protein 3e+0 Atcg00530 - O.I. C.G. H.G.
27.1 99.6 1.9 Os03g0138500 AK102410.1 - Hypothetical protein 5e-2 At3g10040 transcription factor O.I. C.G. H.G.
26.7 99.6 14.7 Os03g0727000 AK107637.1 - Homeobox 20 8e-16 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) O.I. C.G. H.G.
25.9 99.5 4.5 Os01g0198000 AU100840 - RNA dependent RNA polymerase family protein 1e-1 At2g22520 unknown protein O.I. C.G. H.G.
25.9 99.5 0.1 Os07g0230500 9635.m01249 - Excinuclease ABC, C subunit, N-terminal domaincontaining protein 4e-8 At2g30350 endo/excinuclease amino terminal domain-containing protein O.I. C.G. H.G.
25.5 99.5 11.4 Os02g0163400 AK121545.1 - Conserved hypothetical protein 5e+0 At4g13160 unknown protein O.I. C.G. H.G.
25.4 99.5 7.1 Os12g0157700 9640.m00533 - Conserved hypothetical protein 6e-1 At4g26880 stigma-specific Stig1 family protein O.I. C.G. H.G.
25.2 99.5 5.2 Os02g0643200 AK106784.1 - YABBY protein family protein 2e-13 At4g00180 YAB3 (YABBY3) O.I. C.G. H.G.
25.2 99.5 2.7 Os02g0617100 AK062664.1 - Conserved hypothetical protein 5e-1 At5g37770 TCH2 (TOUCH 2) O.I. C.G. H.G.
24.9 99.5 2.0 Os03g0422300 AK063543.1 - Hypothetical protein 4e-1 At1g47730 F-box family protein O.I. C.G. H.G.
24.7 99.4 2.2 Os08g0397800 AK108174.1 - Conserved hypothetical protein 2e+0 At3g51200 auxin-responsive family protein O.I. C.G. H.G.
24.6 99.4 9.2 Os01g0917500 AB103395.1 - Protein kinase domain containing protein 2e-6 At1g78980 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) O.I. C.G. H.G.
24.4 99.4 9.7 Os06g0138900 AK105368.1 - Hypothetical protein 7e-1 At3g28630 - O.I. C.G. H.G.
24.2 99.4 10.6 Os07g0136500 9635.m00366 - Conserved hypothetical protein 2e+0 At3g06760 - O.I. C.G. H.G.
23.8 99.4 14.7 Os04g0536300 AK070205.1 - YABBY protein family protein 5e-23 At4g00180 YAB3 (YABBY3) O.I. C.G. H.G.
23.8 99.4 13.4 Os05g0462700 AK105816.1 - Histone H4 variant TH011 6e-24 At5g59690 histone H4 O.I. C.G. H.G.
23.8 99.4 13.4 Os08g0101100 AK069900.1 - HMG1/2 (high mobility group) box family protein 3e-2 At2g42395 unknown protein O.I. C.G. H.G.
23.8 99.4 3.8 Os10g0146200 AK109913.1 - Thaumatin-like protein 1e-5 At1g20030 pathogenesis-related thaumatin family protein O.I. C.G. H.G.
23.7 99.4 1.1 Os04g0208500 AK106410.1 - Cyclin-like F-box domain containing protein 4e+0 At4g35280 zinc finger (C2H2 type) family protein O.I. C.G. H.G.
23.6 99.4 4.1 Os12g0145900 AK109461.1 - Hypothetical protein 9e-18 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) O.I. C.G. H.G.
22.9 99.3 1.9 Os09g0508200 AK064705.1 - - 1e-4 At5g41050 unknown protein O.I. C.G. H.G.
22.8 99.3 6.6 Os03g0416300 AK058400.1 - COBRA-like protein 2 precursor 7e-8 At5g60920 COB (COBRA) O.I. C.G. H.G.
22.7 99.3 5.1 Os05g0489800 AY438639.1 - Histone H3.2 3e-5 At4g40040 histone H3.2 O.I. C.G. H.G.
22.5 99.3 2.7 Os01g0963800 AK107518.1 - Hypothetical protein 4e-1 At5g44495 - O.I. C.G. H.G.
22.0 99.3 3.1 Os08g0479300 AK070025.1 - Cyclin, N-terminal domain containing protein 9e-1 At1g66940 protein kinase-related O.I. C.G. H.G.
21.6 99.2 3.7 Os10g0577400 AK064295.1 - Conserved hypothetical protein 2e-1 At1g22890 unknown protein O.I. C.G. H.G.
21.4 99.2 3.5 Os01g0273100 AK105320.1 - Cyclin-selective ubiquitin carrier protein E2-C 3e-5 At1g50490 UBC20 (ubiquitin-conjugating enzyme 20) O.I. C.G. H.G.
21.2 99.2 2.0 Os03g0728500 AK101820.1 - Forkhead-associated domain containing protein 9e-1 At4g31360 selenium binding O.I. C.G. H.G.
20.9 99.2 6.1 Os12g0138500 AK060933.1 - Ankyrin repeat containing protein 6e-1 At3g57130 BOP1 (BLADE ON PETIOLE 1) O.I. C.G. H.G.
20.9 99.2 1.1 Os03g0165900 AK063721.1 - MS5-like protein (Fragment) 4e-2 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) O.I. C.G. H.G.
20.8 99.2 17.0 Os11g0484300 AK121422.1 - MCM protein 2 family protein 5e-87 At1g44900 ATP binding / DNA binding / DNA-dependent ATPase O.I. C.G. H.G.
20.8 99.2 3.8 Os09g0528000 AK060588.1 - Kinesin, motor region domain containing protein 1e-10 At3g51150 kinesin motor family protein O.I. C.G. H.G.
20.8 99.2 3.6 Os09g0111100 AK103499.1 - Cyclin, N-terminal domain containing protein 9e-1 At5g44570 unknown protein O.I. C.G. H.G.
20.5 99.1 2.0 Os02g0163500 AK070929.1 - Conserved hypothetical protein 2e+0 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) O.I. C.G. H.G.
20.5 99.1 0.0 Os05g0205100 AK111332.1 - NLI interacting factor domain containing protein 2e-1 At3g57390 AGL18 O.I. C.G. H.G.
20.4 99.1 22.5 Os05g0223200 AK106308.1 - Glycine-rich RNA-binding protein GRP2A 2e+0 At5g50820 anac097 (Arabidopsis NAC domain containing protein 97) O.I. C.G. H.G.
20.2 99.1 6.7 Os12g0636100 AK072712.1 - TPR-like domain containing protein 2e-1 At2g36695 unknown protein O.I. C.G. H.G.
20.1 99.1 1.4 Os04g0645200 AK067139.1 - VQ domain containing protein 2e+0 At2g04790 unknown protein O.I. C.G. H.G.
20.0 99.1 9.2 Os01g0147700 AK066686.1 - XS zinc finger domain containing protein 6e-9 At4g00380 XH/XS domain-containing protein / XS zinc finger domain-containing protein O.I. C.G. H.G.
19.8 99.1 6.6 Os03g0709100 AK061596.1 - Basic blue protein (Cusacyanin) (Plantacyanin)(CBP) 4e-1 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) O.I. C.G. H.G.
19.6 99.1 10.0 Os04g0395700 9632.m03097 - Conserved hypothetical protein 1e-1 At2g30560 glycine-rich protein O.I. C.G. H.G.
19.6 99.1 5.6 Os01g0206200 AK102840.1 - - 6e-1 At4g35900 FD O.I. C.G. H.G.
19.2 99.0 15.9 Os08g0512600 D64036.1 - Protein cdc2 kinase 2e-7 At1g76540 CDKB2 O.I. C.G. H.G.
19.0 99.0 11.5 Os10g0416200 AK073016.1 - Naringenin-chalcone synthase family protein 1e-3 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
103.1	100.0	1.0	Os11g0227300	AK064544.1	-	Conserved hypothetical protein	9e-1	At3g24690	-	O.I.	C.G.	H.G.
53.5	99.9	5.2	Os12g0208900	9640.m01003	-	ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein	4e-2	At1g69600	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	O.I.	C.G.	H.G.
49.1	99.9	8.1	Os05g0547600	AK102181.1	-	Conserved hypothetical protein	2e+0	At3g53210	nodulin MtN21 family protein	O.I.	C.G.	H.G.
48.8	99.9	0.4	Os04g0587900	AK108032.1	-	Hypothetical protein	3e+0	At5g07230	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	C.G.	H.G.
38.3	99.8	14.2	Os01g0327500	AK107756.1	-	Conserved hypothetical protein	1e+0	At5g66170	-	O.I.	C.G.	H.G.
35.5	99.8	35.6	Os06g0115700	AK073098.1	-	Conserved hypothetical protein	1e-1	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	C.G.	H.G.
34.2	99.8	17.6	Os06g0162800	U78890.1	-	MADS box protein	6e-4	At1g24260	SEP3 (SEPALLATA3)	O.I.	C.G.	H.G.
33.4	99.8	0.0	Os06g0688900	9634.m04623	-	-	4e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	C.G.	H.G.
32.4	99.8	7.7	Os03g0110500	AK101157.1	-	Conserved hypothetical protein	2e-1	At5g14690	unknown protein	O.I.	C.G.	H.G.
32.2	99.7	17.0	Os06g0219500	AK064012.1	-	Low molecular weight heat shock protein precursor	1e-2	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	O.I.	C.G.	H.G.
31.5	99.7	33.8	Os08g0199400	AK105852.1	-	Fatty acid desaturase, type 2 family protein	3e-3	At5g16230	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	C.G.	H.G.
29.8	99.7	8.0	Os03g0800200	D42427	-	Argonaute protein	3e-11	At2g27880	AGO5 (ARGONAUTE 5)	O.I.	C.G.	H.G.
28.1	99.6	1.7	Os02g0492900	AK110813.1	-	Ankyrin-like protein-like protein	3e+0	Atcg00530	-	O.I.	C.G.	H.G.
27.1	99.6	1.9	Os03g0138500	AK102410.1	-	Hypothetical protein	5e-2	At3g10040	transcription factor	O.I.	C.G.	H.G.
26.7	99.6	14.7	Os03g0727000	AK107637.1	-	Homeobox 20	8e-16	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	C.G.	H.G.
25.9	99.5	4.5	Os01g0198000	AU100840	-	RNA dependent RNA polymerase family protein	1e-1	At2g22520	unknown protein	O.I.	C.G.	H.G.
25.9	99.5	0.1	Os07g0230500	9635.m01249	-	Excinuclease ABC, C subunit, N-terminal domaincontaining protein	4e-8	At2g30350	endo/excinuclease amino terminal domain-containing protein	O.I.	C.G.	H.G.
25.5	99.5	11.4	Os02g0163400	AK121545.1	-	Conserved hypothetical protein	5e+0	At4g13160	unknown protein	O.I.	C.G.	H.G.
25.4	99.5	7.1	Os12g0157700	9640.m00533	-	Conserved hypothetical protein	6e-1	At4g26880	stigma-specific Stig1 family protein	O.I.	C.G.	H.G.
25.2	99.5	5.2	Os02g0643200	AK106784.1	-	YABBY protein family protein	2e-13	At4g00180	YAB3 (YABBY3)	O.I.	C.G.	H.G.
25.2	99.5	2.7	Os02g0617100	AK062664.1	-	Conserved hypothetical protein	5e-1	At5g37770	TCH2 (TOUCH 2)	O.I.	C.G.	H.G.
24.9	99.5	2.0	Os03g0422300	AK063543.1	-	Hypothetical protein	4e-1	At1g47730	F-box family protein	O.I.	C.G.	H.G.
24.7	99.4	2.2	Os08g0397800	AK108174.1	-	Conserved hypothetical protein	2e+0	At3g51200	auxin-responsive family protein	O.I.	C.G.	H.G.
24.6	99.4	9.2	Os01g0917500	AB103395.1	-	Protein kinase domain containing protein	2e-6	At1g78980	SRF5 (STRUBBELIG-RECEPTOR FAMILY 5)	O.I.	C.G.	H.G.
24.4	99.4	9.7	Os06g0138900	AK105368.1	-	Hypothetical protein	7e-1	At3g28630	-	O.I.	C.G.	H.G.
24.2	99.4	10.6	Os07g0136500	9635.m00366	-	Conserved hypothetical protein	2e+0	At3g06760	-	O.I.	C.G.	H.G.
23.8	99.4	14.7	Os04g0536300	AK070205.1	-	YABBY protein family protein	5e-23	At4g00180	YAB3 (YABBY3)	O.I.	C.G.	H.G.
23.8	99.4	13.4	Os05g0462700	AK105816.1	-	Histone H4 variant TH011	6e-24	At5g59690	histone H4	O.I.	C.G.	H.G.
23.8	99.4	13.4	Os08g0101100	AK069900.1	-	HMG1/2 (high mobility group) box family protein	3e-2	At2g42395	unknown protein	O.I.	C.G.	H.G.
23.8	99.4	3.8	Os10g0146200	AK109913.1	-	Thaumatin-like protein	1e-5	At1g20030	pathogenesis-related thaumatin family protein	O.I.	C.G.	H.G.
23.7	99.4	1.1	Os04g0208500	AK106410.1	-	Cyclin-like F-box domain containing protein	4e+0	At4g35280	zinc finger (C2H2 type) family protein	O.I.	C.G.	H.G.
23.6	99.4	4.1	Os12g0145900	AK109461.1	-	Hypothetical protein	9e-18	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	O.I.	C.G.	H.G.
22.9	99.3	1.9	Os09g0508200	AK064705.1	-	-	1e-4	At5g41050	unknown protein	O.I.	C.G.	H.G.
22.8	99.3	6.6	Os03g0416300	AK058400.1	-	COBRA-like protein 2 precursor	7e-8	At5g60920	COB (COBRA)	O.I.	C.G.	H.G.
22.7	99.3	5.1	Os05g0489800	AY438639.1	-	Histone H3.2	3e-5	At4g40040	histone H3.2	O.I.	C.G.	H.G.
22.5	99.3	2.7	Os01g0963800	AK107518.1	-	Hypothetical protein	4e-1	At5g44495	-	O.I.	C.G.	H.G.
22.0	99.3	3.1	Os08g0479300	AK070025.1	-	Cyclin, N-terminal domain containing protein	9e-1	At1g66940	protein kinase-related	O.I.	C.G.	H.G.
21.6	99.2	3.7	Os10g0577400	AK064295.1	-	Conserved hypothetical protein	2e-1	At1g22890	unknown protein	O.I.	C.G.	H.G.
21.4	99.2	3.5	Os01g0273100	AK105320.1	-	Cyclin-selective ubiquitin carrier protein E2-C	3e-5	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	O.I.	C.G.	H.G.
21.2	99.2	2.0	Os03g0728500	AK101820.1	-	Forkhead-associated domain containing protein	9e-1	At4g31360	selenium binding	O.I.	C.G.	H.G.
20.9	99.2	6.1	Os12g0138500	AK060933.1	-	Ankyrin repeat containing protein	6e-1	At3g57130	BOP1 (BLADE ON PETIOLE 1)	O.I.	C.G.	H.G.
20.9	99.2	1.1	Os03g0165900	AK063721.1	-	MS5-like protein (Fragment)	4e-2	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	C.G.	H.G.
20.8	99.2	17.0	Os11g0484300	AK121422.1	-	MCM protein 2 family protein	5e-87	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	O.I.	C.G.	H.G.
20.8	99.2	3.8	Os09g0528000	AK060588.1	-	Kinesin, motor region domain containing protein	1e-10	At3g51150	kinesin motor family protein	O.I.	C.G.	H.G.
20.8	99.2	3.6	Os09g0111100	AK103499.1	-	Cyclin, N-terminal domain containing protein	9e-1	At5g44570	unknown protein	O.I.	C.G.	H.G.
20.5	99.1	2.0	Os02g0163500	AK070929.1	-	Conserved hypothetical protein	2e+0	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	C.G.	H.G.
20.5	99.1	0.0	Os05g0205100	AK111332.1	-	NLI interacting factor domain containing protein	2e-1	At3g57390	AGL18	O.I.	C.G.	H.G.
20.4	99.1	22.5	Os05g0223200	AK106308.1	-	Glycine-rich RNA-binding protein GRP2A	2e+0	At5g50820	anac097 (Arabidopsis NAC domain containing protein 97)	O.I.	C.G.	H.G.
20.2	99.1	6.7	Os12g0636100	AK072712.1	-	TPR-like domain containing protein	2e-1	At2g36695	unknown protein	O.I.	C.G.	H.G.
20.1	99.1	1.4	Os04g0645200	AK067139.1	-	VQ domain containing protein	2e+0	At2g04790	unknown protein	O.I.	C.G.	H.G.
20.0	99.1	9.2	Os01g0147700	AK066686.1	-	XS zinc finger domain containing protein	6e-9	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	C.G.	H.G.
19.8	99.1	6.6	Os03g0709100	AK061596.1	-	Basic blue protein (Cusacyanin) (Plantacyanin)(CBP)	4e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	C.G.	H.G.
19.6	99.1	10.0	Os04g0395700	9632.m03097	-	Conserved hypothetical protein	1e-1	At2g30560	glycine-rich protein	O.I.	C.G.	H.G.
19.6	99.1	5.6	Os01g0206200	AK102840.1	-	-	6e-1	At4g35900	FD	O.I.	C.G.	H.G.
19.2	99.0	15.9	Os08g0512600	D64036.1	-	Protein cdc2 kinase	2e-7	At1g76540	CDKB2	O.I.	C.G.	H.G.
19.0	99.0	11.5	Os10g0416200	AK073016.1	-	Naringenin-chalcone synthase family protein	1e-3	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	O.I.	C.G.	H.G.

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GSM ID	GSM409429
Assay name	Nipponbare_young panicle 2cm, biological rep5
GSE experiment	GSE16265: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Microarray experiments to specifically-expressed genes

GSM ID GSM409429 Assay name Nipponbare_young panicle 2cm, biological rep5 GSE experiment GSE16265: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

GSM ID GSM409429

Assay name Nipponbare_young panicle 2cm, biological rep5

GSE experiment GSE16265: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip