Microarray experiments to specifically-expressed genes

GSM ID GSM409427
Assay name Nipponbare_young panicle 2cm, biological rep3
GSE experiment GSE16265: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. C.G. H.G. Other DB
53.199.914.2Os03g0800200D42427-Argonaute protein3e-11At2g27880AGO5 (ARGONAUTE 5)O.I.C.G.H.G.
44.999.92.1Os04g0208500AK106410.1-Cyclin-like F-box domain containing protein4e+0At4g35280zinc finger (C2H2 type) family proteinO.I.C.G.H.G.
43.999.94.2Os12g02089009640.m01003-ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein4e-2At1g69600ZFHD1 (ZINC FINGER HOMEODOMAIN 1)O.I.C.G.H.G.
39.399.95.1Os08g0114200AK106851.1-Endoglucanase 1 precursor (EC 3.2.1.4)(Endo-1,4-beta-glucanase) (Abscission cellulase 1)6e-5At1g23210AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)O.I.C.G.H.G.
36.199.86.3Os01g0198000AU100840-RNA dependent RNA polymerase family protein1e-1At2g22520unknown proteinO.I.C.G.H.G.
35.199.813.0Os01g0327500AK107756.1-Conserved hypothetical protein1e+0At5g66170-O.I.C.G.H.G.
32.599.820.8Os07g0297400AK101219.1-Conserved hypothetical protein2e-1At5g42635glycine-rich proteinO.I.C.G.H.G.
32.499.86.7Os02g0643200AK106784.1-YABBY protein family protein2e-13At4g00180YAB3 (YABBY3)O.I.C.G.H.G.
32.099.716.4Os06g0162800U78890.1-MADS box protein6e-4At1g24260SEP3 (SEPALLATA3)O.I.C.G.H.G.
31.399.717.3Os03g0727000AK107637.1-Homeobox 208e-16At4g08150KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)O.I.C.G.H.G.
31.399.75.4Os12g0145900AK109461.1-Hypothetical protein9e-18At1g09960SUT4 (SUCROSE TRANSPORTER 4)O.I.C.G.H.G.
30.299.732.4Os08g0199400AK105852.1-Fatty acid desaturase, type 2 family protein3e-3At5g16230acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.C.G.H.G.
29.199.729.2Os06g0115700AK073098.1-Conserved hypothetical protein1e-1At1g12760protein binding / ubiquitin-protein ligase/ zinc ion bindingO.I.C.G.H.G.
29.099.73.4Os06g0645500AK109234.1-Sterile alpha motif homology domain containingprotein2e-3At1g80520-O.I.C.G.H.G.
28.399.61.1Os03g0243700AK059149.1--3e-6At4g38650glycosyl hydrolase family 10 proteinO.I.C.G.H.G.
28.199.62.0Os04g0645200AK067139.1-VQ domain containing protein2e+0At2g04790unknown proteinO.I.C.G.H.G.
27.599.61.9Os05g01805009633.m00782-Hypothetical protein2e-1At5g66815unknown proteinO.I.C.G.H.G.
27.599.61.8Os07g0134200AF193835.1-Receptor-like protein kinase 32e-22At5g65700BAM1 (BARELY ANY MERISTEM 1)O.I.C.G.H.G.
27.499.64.5Os05g0547600AK102181.1-Conserved hypothetical protein2e+0At3g53210nodulin MtN21 family proteinO.I.C.G.H.G.
26.699.59.9Os01g0917500AB103395.1-Protein kinase domain containing protein2e-6At1g78980SRF5 (STRUBBELIG-RECEPTOR FAMILY 5)O.I.C.G.H.G.
26.499.512.8Os06g0233800AU197258-Conserved hypothetical protein1e+1Atmg00750-O.I.C.G.H.G.
26.399.516.3Os04g0536300AK070205.1-YABBY protein family protein5e-23At4g00180YAB3 (YABBY3)O.I.C.G.H.G.
26.099.521.2Os11g0484300AK121422.1-MCM protein 2 family protein5e-87At1g44900ATP binding / DNA binding / DNA-dependent ATPaseO.I.C.G.H.G.
25.799.57.5Os03g0416300AK058400.1-COBRA-like protein 2 precursor7e-8At5g60920COB (COBRA)O.I.C.G.H.G.
25.799.54.1Os10g0146200AK109913.1-Thaumatin-like protein1e-5At1g20030pathogenesis-related thaumatin family proteinO.I.C.G.H.G.
25.699.519.1Os07g0543700AK105710.1-Conserved hypothetical protein6e-1At5g38760unknown proteinO.I.C.G.H.G.
25.699.50.4Os12g0631800AK067318.1-Phytoene dehydrogenase-like9e-14At5g49555amine oxidase-relatedO.I.C.G.H.G.
25.299.53.6Os02g0226600AK109849.1-POX domain containing protein3e-4At1g75430BLH11 (BEL1-LIKE HOMEODOMAIN 11)O.I.C.G.H.G.
24.999.50.5Os08g0163100AK064406.1--1e-2At2g27510ATFD3 (ferredoxin 3)O.I.C.G.H.G.
24.899.50.4Os01g0293100AK106850.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein2e-1At1g54215proline-rich family proteinO.I.C.G.H.G.
24.299.414.7Os10g0416200AK073016.1-Naringenin-chalcone synthase family protein1e-3At2g26640KCS11 (3-KETOACYL-COA SYNTHASE 11)O.I.C.G.H.G.
24.199.41.5Os04g0526000AK064708.1-PCF11e-1At1g11700unknown proteinO.I.C.G.H.G.
23.799.45.8Os04g0576900AK102667.1-Protein kinase domain containing protein9e-8At1g75640leucine-rich repeat family protein / protein kinase family proteinO.I.C.G.H.G.
23.799.44.1Os09g0111100AK103499.1-Cyclin, N-terminal domain containing protein9e-1At5g44570unknown proteinO.I.C.G.H.G.
23.599.416.2Os03g0221500AK103138.1-Glycoside hydrolase, family 17 protein1e-3At2g01630glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeO.I.C.G.H.G.
23.599.41.9Os09g0508200AK064705.1--1e-4At5g41050unknown proteinO.I.C.G.H.G.
23.499.41.3Os09g0535200AK110145.1-Conserved hypothetical protein5e-1At1g14205ribosomal protein L18 family proteinO.I.C.G.H.G.
23.399.46.5Os12g01577009640.m00533-Conserved hypothetical protein6e-1At4g26880stigma-specific Stig1 family proteinO.I.C.G.H.G.
23.199.36.8Os12g0138500AK060933.1-Ankyrin repeat containing protein6e-1At3g57130BOP1 (BLADE ON PETIOLE 1)O.I.C.G.H.G.
22.999.325.2Os05g0223200AK106308.1-Glycine-rich RNA-binding protein GRP2A2e+0At5g50820anac097 (Arabidopsis NAC domain containing protein 97)O.I.C.G.H.G.
22.999.316.4Os01g0543100AK105363.1-Peroxidase 72 precursor (EC 1.11.1.7) (AtperoxP72) (PRXR8) (ATP6a)5e-5At5g66390peroxidase 72 (PER72) (P72) (PRXR8)O.I.C.G.H.G.
22.499.30.3Os01g0182700AY341853.1-WRKY transcription factor 341e-2At2g44745WRKY family transcription factorO.I.C.G.H.G.
22.299.37.4Os03g0709100AK061596.1-Basic blue protein (Cusacyanin) (Plantacyanin)(CBP)4e-1At5g15150ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)O.I.C.G.H.G.
21.999.38.8Os03g0809900AK103277.1-Tsunagi1e-1At3g60270uclacyanin, putativeO.I.C.G.H.G.
21.999.32.2Os02g0830700AK101172.1-Leucine-rich repeat, plant specific containingprotein1e-3At1g10850ATP binding / protein binding / protein kinase/ protein serine/threonine kinaseO.I.C.G.H.G.
21.899.21.6Os03g0138500AK102410.1-Hypothetical protein5e-2At3g10040transcription factorO.I.C.G.H.G.
21.499.28.5Os06g0138900AK105368.1-Hypothetical protein7e-1At3g28630-O.I.C.G.H.G.
20.799.22.7Os01g0148400NM_184361.1-Brix domain containing protein9e-1At5g62660F-box family proteinO.I.C.G.H.G.
20.699.122.7Os04g0459000AK103526.1-MDR-like ABC transporter2e-13At3g28860ABCB19O.I.C.G.H.G.
20.699.12.4Os01g0963800AK107518.1-Hypothetical protein4e-1At5g44495-O.I.C.G.H.G.
20.499.112.9Os01g0317800AK105905.1-Alpha/beta hydrolase family protein2e-4At5g14980esterase/lipase/thioesterase family proteinO.I.C.G.H.G.
20.399.13.1Os08g0536800AK059041.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein4e-5At1g10120DNA binding / transcription factorO.I.C.G.H.G.
20.299.19.3Os01g0147700AK066686.1-XS zinc finger domain containing protein6e-9At4g00380XH/XS domain-containing protein / XS zinc finger domain-containing proteinO.I.C.G.H.G.
20.299.18.7Os02g0733300AK101108.1-Endo-beta-1,4-glucanase precursor (EC 3.2.1.4)1e-15At1g23210AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)O.I.C.G.H.G.
20.299.14.4Os04g0419600CR282432-Histone H35e-21At1g09200histone H3O.I.C.G.H.G.
20.299.11.2Os01g0779800AK119965.1-Hypothetical protein4e-2At4g28180unknown proteinO.I.C.G.H.G.
20.099.13.3Os09g0476800AK109663.1-Beta-Ig-H3/fasciclin domain containing protein2e+0At2g26600glycosyl hydrolase family 17 proteinO.I.C.G.H.G.
19.799.10.5Os05g0120900AK121904.1-Conserved hypothetical protein4e-2At3g42800unknown proteinO.I.C.G.H.G.
19.599.110.9Os05g0462700AK105816.1-Histone H4 variant TH0116e-24At5g59690histone H4O.I.C.G.H.G.
19.499.01.5Os11g0686100AK105797.1-Conserved hypothetical protein3e+0At5g10030TGA4 (TGACG MOTIF-BINDING FACTOR 4)O.I.C.G.H.G.
19.499.00.0Os10g03665009638.m01868--9e-1At3g59800unknown proteinO.I.C.G.H.G.
19.399.015.5Os03g0669100AK063633.1-Deoxyuridine 5'-triphosphate nucleotidohydrolase(EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (P18)4e-1At5g62900unknown proteinO.I.C.G.H.G.
19.399.00.4Os12g0616000AK106725.1-Kinesin-like protein KIFC31e-3At2g22610kinesin motor protein-relatedO.I.C.G.H.G.
19.299.030.8Os06g0729300AK122176.1-AGO1 homologous protein2e-21At1g48410AGO1 (ARGONAUTE 1)O.I.C.G.H.G.
19.199.05.4Os02g0682200U78782.1-MADS box protein2e-4At3g61120AGL13 (AGAMOUS-LIKE 13)O.I.C.G.H.G.
19.199.01.7Os08g0397800AK108174.1-Conserved hypothetical protein2e+0At3g51200auxin-responsive family proteinO.I.C.G.H.G.
19.099.010.0Os06g0219500AK064012.1-Low molecular weight heat shock protein precursor1e-2At4g25200ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)O.I.C.G.H.G.



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