CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM40555

Assay name Polysomal mRNA - Hypoxia stress

GSE experiment GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
264.8 100.0 49.3 At4g26460 828752 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
225.7 100.0 53.1 At1g63540 842659 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA O.I. C.G. H.G.
102.9 99.9 177.2 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
99.2 99.9 121.4 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
91.0 99.9 284.2 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
90.0 99.9 151.9 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF O.I. C.G. H.G.
87.2 99.9 98.5 At2g47520 819365 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
77.6 99.9 234.5 At1g43800 840977 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM O.I. C.G. H.G.
72.6 99.9 174.8 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
70.6 99.9 25.2 At1g44414 841028 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
69.8 99.9 42.1 At5g26200 832689 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
69.7 99.9 165.2 At1g80670 844406 transducin family protein / WD-40 repeat family protein This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase O.I. C.G. H.G.
63.6 99.8 87.0 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA O.I. C.G. H.G.
60.0 99.8 200.5 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
57.9 99.8 86.0 At1g69680 843304 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
48.2 99.8 31.1 At1g10880 837631 unknown protein F:unknown;P:unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
46.6 99.8 57.8 At5g42200 834225 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
45.8 99.8 79.1 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
40.0 99.8 40.2 At1g59660 842256 nucleoporin family protein F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA O.I. C.G. H.G.
39.1 99.8 134.3 At4g40060 830169 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
38.2 99.8 161.3 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
38.1 99.8 196.5 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P O.I. C.G. H.G.
32.8 99.7 378.3 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
30.7 99.7 109.7 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
30.2 99.7 53.3 At1g72800 843611 nuM1-related F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV O.I. C.G. H.G.
29.4 99.7 202.0 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.5 99.7 100.4 At5g40690 834069 - F:unknown;P:biological_process unknown;C:unknown;OMPFVB O.I. C.G. H.G.
25.5 99.7 23.6 At2g20500 816571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
24.3 99.6 145.8 At4g13830 827017 J20 (DNAJ-LIKE 20) DnaJ-like protein (J20); nuclear gene O.I. C.G. H.G.
23.7 99.6 189.1 At3g13310 820531 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV O.I. C.G. H.G.
23.0 99.6 104.4 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
22.9 99.6 100.3 At1g26270 839168 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
22.8 99.6 78.5 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
22.2 99.6 12.2 At1g62520 842549 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOB O.I. C.G. H.G.
22.0 99.6 383.3 At4g27450 828854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF O.I. C.G. H.G.
21.8 99.6 77.6 At3g17100 820967 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM O.I. C.G. H.G.
21.8 99.6 12.9 At3g54520 824617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB O.I. C.G. H.G.
21.7 99.6 76.0 At1g74940 843833 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
21.7 99.6 41.0 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA O.I. C.G. H.G.
21.6 99.6 156.5 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB O.I. C.G. H.G.
20.4 99.6 217.7 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
20.2 99.6 41.4 At4g32690 829404 GLB3 Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast. O.I. C.G. H.G.
19.9 99.6 116.3 At4g25200 828623 ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial O.I. C.G. H.G.
19.7 99.6 138.3 At4g34030 829549 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. O.I. C.G. H.G.
19.6 99.6 172.4 At5g11090 830977 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
19.3 99.6 190.3 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
19.2 99.6 61.5 At4g33950 829541 OST1 (OPEN STOMATA 1) Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network. O.I. C.G. H.G.
18.6 99.5 91.2 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
17.8 99.5 134.8 At1g54050 841843 17.4 kDa class III heat shock protein (HSP17.4-CIII) F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
17.7 99.5 88.6 At5g51440 835218 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM O.I. C.G. H.G.
17.4 99.5 261.7 At5g19550 832075 ASP2 (ASPARTATE AMINOTRANSFERASE 2) Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light. O.I. C.G. H.G.
17.3 99.5 216.5 At3g26510 822258 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBV O.I. C.G. H.G.
17.3 99.5 132.6 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.
17.1 99.5 176.9 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.8 99.5 145.6 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase O.I. C.G. H.G.
16.5 99.5 174.8 At5g12030 831076 AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A) Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development. O.I. C.G. H.G.
16.2 99.5 37.7 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA O.I. C.G. H.G.
16.1 99.5 88.4 At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO O.I. C.G. H.G.
16.0 99.5 320.4 At3g11930 820366 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. C.G. H.G.
15.3 99.4 50.5 At1g05560 837058 UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1) A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques. O.I. C.G. H.G.
15.1 99.4 62.4 At5g23610 832427 - F:unknown;P:biological_process unknown;C:unknown;POBFAM O.I. C.G. H.G.
15.1 99.4 40.2 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
14.9 99.4 163.9 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.6 99.4 111.9 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
14.5 99.4 62.7 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
14.1 99.4 21.0 At3g02240 820386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.0 99.4 451.7 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
13.8 99.4 71.5 At1g59590 842249 ZCF37 ZCF37 mRNA, complete cds O.I. C.G. H.G.
13.7 99.4 433.4 At5g58070 835919 TIL (TEMPERATURE-INDUCED LIPOCALIN) Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane. O.I. C.G. H.G.
13.6 99.4 64.1 At2g46550 819267 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
13.2 99.4 97.3 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
13.2 99.4 78.3 At1g43700 840957 VIP1 (VIRE2-INTERACTING PROTEIN 1) Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. O.I. C.G. H.G.
12.9 99.3 138.1 At1g17170 838288 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
12.6 99.3 459.4 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
12.6 99.3 145.1 At2g36950 818269 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV O.I. C.G. H.G.
12.6 99.3 68.8 At1g18330 838413 EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1) EARLY-PHYTOCHROME-RESPONSIVE1 O.I. C.G. H.G.
12.6 99.3 6.4 At2g31860 3768497 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.5 99.3 35.2 At3g59910 825161 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
12.4 99.3 205.2 At2g36460 818220 fructose-bisphosphate aldolase, putative F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:mitochondrion, plasma membrane, membrane;OMBPF O.I. C.G. H.G.
12.4 99.3 43.9 At3g11600 820333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.4 99.3 24.0 At3g15070 820736 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB O.I. C.G. H.G.
12.3 99.3 80.8 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
12.2 99.3 125.6 At1g72430 843575 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
12.1 99.3 146.6 At1g20110 838600 zinc finger (FYVE type) family protein F:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVA O.I. C.G. H.G.
12.1 99.3 29.8 At1g02750 839432 zinc ion binding F:zinc ion binding;P:response to water deprivation;C:intracellular;PM O.I. C.G. H.G.
11.8 99.3 158.7 At3g48530 824012 KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;BOMAFP O.I. C.G. H.G.
11.8 99.3 80.2 At1g68670 843197 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
11.6 99.3 109.9 At1g63800 842683 UBC5 (ubiquitin-conjugating enzyme 5) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
11.4 99.3 111.1 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
11.2 99.2 160.8 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
11.0 99.2 173.8 At3g10985 2745879 SAG20 (SENESCENCE ASSOCIATED GENE 20) A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis. O.I. C.G. H.G.
10.9 99.2 186.0 At3g27770 822398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
10.9 99.2 46.9 At1g05060 839336 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.8 99.2 80.4 At5g37070 833678 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.8 99.2 34.1 At4g01120 826505 GBF2 (G-BOX BINDING FACTOR 2) bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light O.I. C.G. H.G.
10.8 99.2 23.9 At5g39660 833962 CDF2 (CYCLING DOF FACTOR 2) Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. O.I. C.G. H.G.
10.7 99.2 101.5 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
10.7 99.2 97.7 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
10.7 99.2 67.7 At4g03510 825654 RMA1 RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. O.I. C.G. H.G.
10.6 99.2 96.9 At1g28200 839714 FIP1 (FH INTERACTING PROTEIN 1) VirF-interacting protein FIP1 O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
264.8	100.0	49.3	At4g26460	828752	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
225.7	100.0	53.1	At1g63540	842659	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA	O.I.	C.G.	H.G.
102.9	99.9	177.2	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
99.2	99.9	121.4	At5g10040	830868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
91.0	99.9	284.2	At1g33055	840201	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
90.0	99.9	151.9	At2g17850	816295	-	F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF	O.I.	C.G.	H.G.
87.2	99.9	98.5	At2g47520	819365	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
77.6	99.9	234.5	At1g43800	840977	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM	O.I.	C.G.	H.G.
72.6	99.9	174.8	At5g39890	833986	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
70.6	99.9	25.2	At1g44414	841028	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
69.8	99.9	42.1	At5g26200	832689	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
69.7	99.9	165.2	At1g80670	844406	transducin family protein / WD-40 repeat family protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	O.I.	C.G.	H.G.
63.6	99.8	87.0	At2g29870	817537	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:membrane;BPMOFA	O.I.	C.G.	H.G.
60.0	99.8	200.5	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
57.9	99.8	86.0	At1g69680	843304	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
48.2	99.8	31.1	At1g10880	837631	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
46.6	99.8	57.8	At5g42200	834225	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
45.8	99.8	79.1	At4g33560	829495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
40.0	99.8	40.2	At1g59660	842256	nucleoporin family protein	F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA	O.I.	C.G.	H.G.
39.1	99.8	134.3	At4g40060	830169	ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
38.2	99.8	161.3	At5g15120	831364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
38.1	99.8	196.5	At4g10270	826619	wound-responsive family protein	F:molecular_function unknown;P:response to wounding;C:unknown;P	O.I.	C.G.	H.G.
32.8	99.7	378.3	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
30.7	99.7	109.7	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
30.2	99.7	53.3	At1g72800	843611	nuM1-related	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV	O.I.	C.G.	H.G.
29.4	99.7	202.0	At3g02550	821112	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.5	99.7	100.4	At5g40690	834069	-	F:unknown;P:biological_process unknown;C:unknown;OMPFVB	O.I.	C.G.	H.G.
25.5	99.7	23.6	At2g20500	816571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
24.3	99.6	145.8	At4g13830	827017	J20 (DNAJ-LIKE 20)	DnaJ-like protein (J20); nuclear gene	O.I.	C.G.	H.G.
23.7	99.6	189.1	At3g13310	820531	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
23.0	99.6	104.4	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
22.9	99.6	100.3	At1g26270	839168	phosphatidylinositol 3- and 4-kinase family protein	F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
22.8	99.6	78.5	At1g55810	842031	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
22.2	99.6	12.2	At1g62520	842549	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOB	O.I.	C.G.	H.G.
22.0	99.6	383.3	At4g27450	828854	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF	O.I.	C.G.	H.G.
21.8	99.6	77.6	At3g17100	820967	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM	O.I.	C.G.	H.G.
21.8	99.6	12.9	At3g54520	824617	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB	O.I.	C.G.	H.G.
21.7	99.6	76.0	At1g74940	843833	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
21.7	99.6	41.0	At3g27220	822341	kelch repeat-containing protein	F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA	O.I.	C.G.	H.G.
21.6	99.6	156.5	At5g21170	832243	5'-AMP-activated protein kinase beta-2 subunit, putative	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
20.4	99.6	217.7	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
20.2	99.6	41.4	At4g32690	829404	GLB3	Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.	O.I.	C.G.	H.G.
19.9	99.6	116.3	At4g25200	828623	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial	O.I.	C.G.	H.G.
19.7	99.6	138.3	At4g34030	829549	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.	O.I.	C.G.	H.G.
19.6	99.6	172.4	At5g11090	830977	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
19.3	99.6	190.3	At2g41730	818772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
19.2	99.6	61.5	At4g33950	829541	OST1 (OPEN STOMATA 1)	Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.	O.I.	C.G.	H.G.
18.6	99.5	91.2	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
17.8	99.5	134.8	At1g54050	841843	17.4 kDa class III heat shock protein (HSP17.4-CIII)	F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
17.7	99.5	88.6	At5g51440	835218	23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)	F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM	O.I.	C.G.	H.G.
17.4	99.5	261.7	At5g19550	832075	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.	O.I.	C.G.	H.G.
17.3	99.5	216.5	At3g26510	822258	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFMBV	O.I.	C.G.	H.G.
17.3	99.5	132.6	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.
17.1	99.5	176.9	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.8	99.5	145.6	At5g54080	835494	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	homogentisate 1,2-dioxygenase	O.I.	C.G.	H.G.
16.5	99.5	174.8	At5g12030	831076	AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)	Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.	O.I.	C.G.	H.G.
16.2	99.5	37.7	At3g10040	820165	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA	O.I.	C.G.	H.G.
16.1	99.5	88.4	At1g10140	837551	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO	O.I.	C.G.	H.G.
16.0	99.5	320.4	At3g11930	820366	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	C.G.	H.G.
15.3	99.4	50.5	At1g05560	837058	UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1)	A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.	O.I.	C.G.	H.G.
15.1	99.4	62.4	At5g23610	832427	-	F:unknown;P:biological_process unknown;C:unknown;POBFAM	O.I.	C.G.	H.G.
15.1	99.4	40.2	At4g24110	828511	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
14.9	99.4	163.9	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.6	99.4	111.9	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
14.5	99.4	62.7	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
14.1	99.4	21.0	At3g02240	820386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.0	99.4	451.7	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
13.8	99.4	71.5	At1g59590	842249	ZCF37	ZCF37 mRNA, complete cds	O.I.	C.G.	H.G.
13.7	99.4	433.4	At5g58070	835919	TIL (TEMPERATURE-INDUCED LIPOCALIN)	Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.	O.I.	C.G.	H.G.
13.6	99.4	64.1	At2g46550	819267	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
13.2	99.4	97.3	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
13.2	99.4	78.3	At1g43700	840957	VIP1 (VIRE2-INTERACTING PROTEIN 1)	Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half.	O.I.	C.G.	H.G.
12.9	99.3	138.1	At1g17170	838288	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
12.6	99.3	459.4	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
12.6	99.3	145.1	At2g36950	818269	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV	O.I.	C.G.	H.G.
12.6	99.3	68.8	At1g18330	838413	EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1)	EARLY-PHYTOCHROME-RESPONSIVE1	O.I.	C.G.	H.G.
12.6	99.3	6.4	At2g31860	3768497	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.5	99.3	35.2	At3g59910	825161	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
12.4	99.3	205.2	At2g36460	818220	fructose-bisphosphate aldolase, putative	F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:mitochondrion, plasma membrane, membrane;OMBPF	O.I.	C.G.	H.G.
12.4	99.3	43.9	At3g11600	820333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.4	99.3	24.0	At3g15070	820736	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB	O.I.	C.G.	H.G.
12.3	99.3	80.8	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
12.2	99.3	125.6	At1g72430	843575	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
12.1	99.3	146.6	At1g20110	838600	zinc finger (FYVE type) family protein	F:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVA	O.I.	C.G.	H.G.
12.1	99.3	29.8	At1g02750	839432	zinc ion binding	F:zinc ion binding;P:response to water deprivation;C:intracellular;PM	O.I.	C.G.	H.G.
11.8	99.3	158.7	At3g48530	824012	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;BOMAFP	O.I.	C.G.	H.G.
11.8	99.3	80.2	At1g68670	843197	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
11.6	99.3	109.9	At1g63800	842683	UBC5 (ubiquitin-conjugating enzyme 5)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
11.4	99.3	111.1	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
11.2	99.2	160.8	At1g19530	838540	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.0	99.2	173.8	At3g10985	2745879	SAG20 (SENESCENCE ASSOCIATED GENE 20)	A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.	O.I.	C.G.	H.G.
10.9	99.2	186.0	At3g27770	822398	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
10.9	99.2	46.9	At1g05060	839336	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.8	99.2	80.4	At5g37070	833678	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.8	99.2	34.1	At4g01120	826505	GBF2 (G-BOX BINDING FACTOR 2)	bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light	O.I.	C.G.	H.G.
10.8	99.2	23.9	At5g39660	833962	CDF2 (CYCLING DOF FACTOR 2)	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	O.I.	C.G.	H.G.
10.7	99.2	101.5	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
10.7	99.2	97.7	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
10.7	99.2	67.7	At4g03510	825654	RMA1	RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.	O.I.	C.G.	H.G.
10.6	99.2	96.9	At1g28200	839714	FIP1 (FH INTERACTING PROTEIN 1)	VirF-interacting protein FIP1	O.I.	C.G.	H.G.

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GSM ID	GSM40555
Assay name	Polysomal mRNA - Hypoxia stress
GSE experiment	GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress

Microarray experiments to specifically-expressed genes

GSM ID GSM40555 Assay name Polysomal mRNA - Hypoxia stress GSE experiment GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress

GSM ID GSM40555

Assay name Polysomal mRNA - Hypoxia stress

GSE experiment GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress