CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM40553

Assay name Total RNA - hypoxia stress

GSE experiment GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
136.9 99.9 41.4 At1g63540 842659 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA O.I. C.G. H.G.
115.9 99.9 32.6 At4g26460 828752 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
90.9 99.9 284.1 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
84.6 99.9 188.7 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
73.5 99.9 149.8 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
71.0 99.9 91.9 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA O.I. C.G. H.G.
66.4 99.8 99.3 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
64.1 99.8 171.9 At4g40060 830169 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
63.2 99.8 127.3 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF O.I. C.G. H.G.
51.1 99.8 117.5 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
50.6 99.8 35.8 At5g26200 832689 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
48.9 99.8 186.1 At1g43800 840977 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM O.I. C.G. H.G.
46.9 99.8 135.5 At1g80670 844406 transducin family protein / WD-40 repeat family protein This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase O.I. C.G. H.G.
41.7 99.8 167.1 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.2 99.8 66.1 At2g47520 819365 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
37.1 99.7 51.5 At5g42200 834225 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
36.7 99.7 56.8 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA O.I. C.G. H.G.
35.0 99.7 390.7 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
31.8 99.7 111.8 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
29.0 99.7 16.1 At1g44414 841028 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.7 99.7 190.0 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase O.I. C.G. H.G.
28.5 99.7 436.0 At4g27450 828854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF O.I. C.G. H.G.
27.9 99.7 7.9 At1g24851 839087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
27.0 99.7 193.5 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.2 99.7 111.3 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
26.0 99.7 198.7 At5g11090 830977 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
25.2 99.6 56.8 At1g69680 843304 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
24.9 99.6 159.0 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P O.I. C.G. H.G.
24.6 99.6 22.2 At1g10880 837631 unknown protein F:unknown;P:unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
24.4 99.6 166.3 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB O.I. C.G. H.G.
23.4 99.6 303.4 At5g19550 832075 ASP2 (ASPARTATE AMINOTRANSFERASE 2) Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light. O.I. C.G. H.G.
22.2 99.6 98.8 At1g26270 839168 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
21.9 99.6 148.8 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.
21.9 99.6 138.3 At4g13830 827017 J20 (DNAJ-LIKE 20) DnaJ-like protein (J20); nuclear gene O.I. C.G. H.G.
21.5 99.6 53.6 At3g07220 819910 transcriptional activator, putative F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPO O.I. C.G. H.G.
21.3 99.6 120.5 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
19.7 99.6 85.9 At1g18330 838413 EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1) EARLY-PHYTOCHROME-RESPONSIVE1 O.I. C.G. H.G.
19.7 99.6 43.1 At1g72800 843611 nuM1-related F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV O.I. C.G. H.G.
19.2 99.6 123.2 At1g55530 842000 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB O.I. C.G. H.G.
18.6 99.5 242.8 At3g27770 822398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
18.2 99.5 165.8 At3g13310 820531 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV O.I. C.G. H.G.
18.2 99.5 37.5 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA O.I. C.G. H.G.
17.8 99.5 70.1 At3g17100 820967 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM O.I. C.G. H.G.
17.8 99.5 52.6 At3g11600 820333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
17.6 99.5 21.1 At1g31350 840024 F-box family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
17.5 99.5 35.8 At1g02750 839432 zinc ion binding F:zinc ion binding;P:response to water deprivation;C:intracellular;PM O.I. C.G. H.G.
17.4 99.5 233.9 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. C.G. H.G.
16.7 99.5 127.5 At4g34030 829549 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. O.I. C.G. H.G.
16.2 99.5 30.2 At4g14720 827125 PPD2 PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. O.I. C.G. H.G.
16.1 99.5 208.4 At3g26510 822258 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBV O.I. C.G. H.G.
16.0 99.5 46.8 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.8 99.5 91.6 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
15.6 99.5 10.9 At3g54520 824617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB O.I. C.G. H.G.
15.3 99.4 55.0 At2g47700 819383 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOF O.I. C.G. H.G.
15.3 99.4 26.7 At3g15070 820736 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB O.I. C.G. H.G.
15.3 99.4 24.2 At1g77150 844052 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.1 99.4 41.2 At5g47830 834834 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
14.7 99.4 39.3 At5g56900 835792 CwfJ-like family protein / zinc finger (CCCH-type) family protein F:zinc ion binding, catalytic activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
14.6 99.4 184.2 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
14.6 99.4 109.3 At5g53160 835397 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.5 99.4 53.6 At4g33950 829541 OST1 (OPEN STOMATA 1) Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network. O.I. C.G. H.G.
14.4 99.4 217.7 At4g05150 825863 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
14.4 99.4 137.6 At1g29970 839876 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
14.1 99.4 34.7 At5g46410 834684 NLI interacting factor (NIF) family protein F:phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
13.8 99.4 77.1 At1g10170 837555 ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. O.I. C.G. H.G.
13.6 99.4 51.8 At1g33050 840200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP O.I. C.G. H.G.
13.6 99.4 7.6 At5g67570 836893 DG1 (DELAYED GREENING 1) Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression. O.I. C.G. H.G.
13.5 99.4 214.6 At2g36460 818220 fructose-bisphosphate aldolase, putative F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:mitochondrion, plasma membrane, membrane;OMBPF O.I. C.G. H.G.
13.3 99.4 440.8 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
13.3 99.4 68.8 At1g76920 844027 F-box family protein (FBX3) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;P O.I. C.G. H.G.
13.3 99.4 28.3 At3g23150 821891 ETR2 (ethylene response 2) Involved in ethylene perception in Arabidopsis O.I. C.G. H.G.
13.2 99.4 148.0 At5g63190 836440 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
13.2 99.4 41.8 At3g07870 819978 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
13.1 99.4 70.5 At5g40690 834069 - F:unknown;P:biological_process unknown;C:unknown;OMPFVB O.I. C.G. H.G.
12.9 99.3 14.8 At1g27590 839650 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
12.8 99.3 15.4 At1g70150 843351 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
12.6 99.3 6.4 At2g31860 3768497 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.1 99.3 196.6 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
12.1 99.3 64.2 At3g12700 820452 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO O.I. C.G. H.G.
12.1 99.3 28.4 At2g46610 819273 arginine/serine-rich splicing factor, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVA O.I. C.G. H.G.
12.1 99.3 9.0 At1g62520 842549 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOB O.I. C.G. H.G.
12.0 99.3 30.4 At2g18670 816382 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
11.9 99.3 19.9 At5g23380 832402 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PO O.I. C.G. H.G.
11.8 99.3 16.1 At2g20500 816571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
11.5 99.3 105.1 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
11.5 99.3 23.5 At3g21350 821689 RNA polymerase transcriptional regulation mediator-related F:transcription regulator activity;P:regulation of transcription;C:nucleus;MFPO O.I. C.G. H.G.
11.5 99.3 7.5 At1g06800 837191 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV O.I. C.G. H.G.
11.4 99.3 35.1 At4g01120 826505 GBF2 (G-BOX BINDING FACTOR 2) bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light O.I. C.G. H.G.
11.4 99.3 25.3 At3g10030 820164 aspartate/glutamate/uridylate kinase family protein F:DNA binding;P:amino acid biosynthetic process;C:cytoplasm;BOPAMF O.I. C.G. H.G.
11.3 99.3 72.5 At1g43700 840957 VIP1 (VIRE2-INTERACTING PROTEIN 1) Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. O.I. C.G. H.G.
11.2 99.2 391.9 At5g58070 835919 TIL (TEMPERATURE-INDUCED LIPOCALIN) Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane. O.I. C.G. H.G.
11.2 99.2 30.9 At4g32690 829404 GLB3 Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast. O.I. C.G. H.G.
11.1 99.2 71.4 At4g32850 829421 nPAP (NUCLEAR POLY(A) POLYMERASE) Encodes a nuclear poly(A) polymerase. O.I. C.G. H.G.
11.0 99.2 73.2 At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO O.I. C.G. H.G.
11.0 99.2 16.7 At4g39550 830109 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOAFV O.I. C.G. H.G.
10.8 99.2 53.7 At1g74940 843833 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.8 99.2 23.2 At5g14390 831290 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMPFV O.I. C.G. H.G.
10.7 99.2 95.7 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
10.6 99.2 53.2 At3g60910 825262 catalytic/ methyltransferase F:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BMOPFA O.I. C.G. H.G.
10.5 99.2 84.7 At5g56140 835713 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
136.9	99.9	41.4	At1g63540	842659	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA	O.I.	C.G.	H.G.
115.9	99.9	32.6	At4g26460	828752	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
90.9	99.9	284.1	At1g33055	840201	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
84.6	99.9	188.7	At5g39890	833986	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
73.5	99.9	149.8	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
71.0	99.9	91.9	At2g29870	817537	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:membrane;BPMOFA	O.I.	C.G.	H.G.
66.4	99.8	99.3	At5g10040	830868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
64.1	99.8	171.9	At4g40060	830169	ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
63.2	99.8	127.3	At2g17850	816295	-	F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF	O.I.	C.G.	H.G.
51.1	99.8	117.5	At1g55810	842031	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
50.6	99.8	35.8	At5g26200	832689	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
48.9	99.8	186.1	At1g43800	840977	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM	O.I.	C.G.	H.G.
46.9	99.8	135.5	At1g80670	844406	transducin family protein / WD-40 repeat family protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	O.I.	C.G.	H.G.
41.7	99.8	167.1	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.2	99.8	66.1	At2g47520	819365	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
37.1	99.7	51.5	At5g42200	834225	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
36.7	99.7	56.8	At3g10040	820165	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA	O.I.	C.G.	H.G.
35.0	99.7	390.7	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
31.8	99.7	111.8	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
29.0	99.7	16.1	At1g44414	841028	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.7	99.7	190.0	At5g54080	835494	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	homogentisate 1,2-dioxygenase	O.I.	C.G.	H.G.
28.5	99.7	436.0	At4g27450	828854	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF	O.I.	C.G.	H.G.
27.9	99.7	7.9	At1g24851	839087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
27.0	99.7	193.5	At3g02550	821112	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.2	99.7	111.3	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
26.0	99.7	198.7	At5g11090	830977	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
25.2	99.6	56.8	At1g69680	843304	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
24.9	99.6	159.0	At4g10270	826619	wound-responsive family protein	F:molecular_function unknown;P:response to wounding;C:unknown;P	O.I.	C.G.	H.G.
24.6	99.6	22.2	At1g10880	837631	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
24.4	99.6	166.3	At5g21170	832243	5'-AMP-activated protein kinase beta-2 subunit, putative	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
23.4	99.6	303.4	At5g19550	832075	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.	O.I.	C.G.	H.G.
22.2	99.6	98.8	At1g26270	839168	phosphatidylinositol 3- and 4-kinase family protein	F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
21.9	99.6	148.8	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.
21.9	99.6	138.3	At4g13830	827017	J20 (DNAJ-LIKE 20)	DnaJ-like protein (J20); nuclear gene	O.I.	C.G.	H.G.
21.5	99.6	53.6	At3g07220	819910	transcriptional activator, putative	F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPO	O.I.	C.G.	H.G.
21.3	99.6	120.5	At5g15120	831364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
19.7	99.6	85.9	At1g18330	838413	EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1)	EARLY-PHYTOCHROME-RESPONSIVE1	O.I.	C.G.	H.G.
19.7	99.6	43.1	At1g72800	843611	nuM1-related	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV	O.I.	C.G.	H.G.
19.2	99.6	123.2	At1g55530	842000	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB	O.I.	C.G.	H.G.
18.6	99.5	242.8	At3g27770	822398	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
18.2	99.5	165.8	At3g13310	820531	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
18.2	99.5	37.5	At3g27220	822341	kelch repeat-containing protein	F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA	O.I.	C.G.	H.G.
17.8	99.5	70.1	At3g17100	820967	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM	O.I.	C.G.	H.G.
17.8	99.5	52.6	At3g11600	820333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
17.6	99.5	21.1	At1g31350	840024	F-box family protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
17.5	99.5	35.8	At1g02750	839432	zinc ion binding	F:zinc ion binding;P:response to water deprivation;C:intracellular;PM	O.I.	C.G.	H.G.
17.4	99.5	233.9	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	C.G.	H.G.
16.7	99.5	127.5	At4g34030	829549	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.	O.I.	C.G.	H.G.
16.2	99.5	30.2	At4g14720	827125	PPD2	PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth.	O.I.	C.G.	H.G.
16.1	99.5	208.4	At3g26510	822258	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFMBV	O.I.	C.G.	H.G.
16.0	99.5	46.8	At4g33560	829495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.8	99.5	91.6	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
15.6	99.5	10.9	At3g54520	824617	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB	O.I.	C.G.	H.G.
15.3	99.4	55.0	At2g47700	819383	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
15.3	99.4	26.7	At3g15070	820736	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB	O.I.	C.G.	H.G.
15.3	99.4	24.2	At1g77150	844052	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.1	99.4	41.2	At5g47830	834834	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
14.7	99.4	39.3	At5g56900	835792	CwfJ-like family protein / zinc finger (CCCH-type) family protein	F:zinc ion binding, catalytic activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
14.6	99.4	184.2	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
14.6	99.4	109.3	At5g53160	835397	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.5	99.4	53.6	At4g33950	829541	OST1 (OPEN STOMATA 1)	Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.	O.I.	C.G.	H.G.
14.4	99.4	217.7	At4g05150	825863	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
14.4	99.4	137.6	At1g29970	839876	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
14.1	99.4	34.7	At5g46410	834684	NLI interacting factor (NIF) family protein	F:phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
13.8	99.4	77.1	At1g10170	837555	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1)	Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	O.I.	C.G.	H.G.
13.6	99.4	51.8	At1g33050	840200	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP	O.I.	C.G.	H.G.
13.6	99.4	7.6	At5g67570	836893	DG1 (DELAYED GREENING 1)	Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression.	O.I.	C.G.	H.G.
13.5	99.4	214.6	At2g36460	818220	fructose-bisphosphate aldolase, putative	F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:mitochondrion, plasma membrane, membrane;OMBPF	O.I.	C.G.	H.G.
13.3	99.4	440.8	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
13.3	99.4	68.8	At1g76920	844027	F-box family protein (FBX3)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;P	O.I.	C.G.	H.G.
13.3	99.4	28.3	At3g23150	821891	ETR2 (ethylene response 2)	Involved in ethylene perception in Arabidopsis	O.I.	C.G.	H.G.
13.2	99.4	148.0	At5g63190	836440	MA3 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
13.2	99.4	41.8	At3g07870	819978	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
13.1	99.4	70.5	At5g40690	834069	-	F:unknown;P:biological_process unknown;C:unknown;OMPFVB	O.I.	C.G.	H.G.
12.9	99.3	14.8	At1g27590	839650	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
12.8	99.3	15.4	At1g70150	843351	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
12.6	99.3	6.4	At2g31860	3768497	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.1	99.3	196.6	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
12.1	99.3	64.2	At3g12700	820452	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
12.1	99.3	28.4	At2g46610	819273	arginine/serine-rich splicing factor, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVA	O.I.	C.G.	H.G.
12.1	99.3	9.0	At1g62520	842549	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOB	O.I.	C.G.	H.G.
12.0	99.3	30.4	At2g18670	816382	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
11.9	99.3	19.9	At5g23380	832402	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PO	O.I.	C.G.	H.G.
11.8	99.3	16.1	At2g20500	816571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
11.5	99.3	105.1	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
11.5	99.3	23.5	At3g21350	821689	RNA polymerase transcriptional regulation mediator-related	F:transcription regulator activity;P:regulation of transcription;C:nucleus;MFPO	O.I.	C.G.	H.G.
11.5	99.3	7.5	At1g06800	837191	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV	O.I.	C.G.	H.G.
11.4	99.3	35.1	At4g01120	826505	GBF2 (G-BOX BINDING FACTOR 2)	bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light	O.I.	C.G.	H.G.
11.4	99.3	25.3	At3g10030	820164	aspartate/glutamate/uridylate kinase family protein	F:DNA binding;P:amino acid biosynthetic process;C:cytoplasm;BOPAMF	O.I.	C.G.	H.G.
11.3	99.3	72.5	At1g43700	840957	VIP1 (VIRE2-INTERACTING PROTEIN 1)	Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half.	O.I.	C.G.	H.G.
11.2	99.2	391.9	At5g58070	835919	TIL (TEMPERATURE-INDUCED LIPOCALIN)	Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.	O.I.	C.G.	H.G.
11.2	99.2	30.9	At4g32690	829404	GLB3	Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.	O.I.	C.G.	H.G.
11.1	99.2	71.4	At4g32850	829421	nPAP (NUCLEAR POLY(A) POLYMERASE)	Encodes a nuclear poly(A) polymerase.	O.I.	C.G.	H.G.
11.0	99.2	73.2	At1g10140	837551	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO	O.I.	C.G.	H.G.
11.0	99.2	16.7	At4g39550	830109	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOAFV	O.I.	C.G.	H.G.
10.8	99.2	53.7	At1g74940	843833	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.8	99.2	23.2	At5g14390	831290	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMPFV	O.I.	C.G.	H.G.
10.7	99.2	95.7	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
10.6	99.2	53.2	At3g60910	825262	catalytic/ methyltransferase	F:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BMOPFA	O.I.	C.G.	H.G.
10.5	99.2	84.7	At5g56140	835713	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.

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GSM ID	GSM40553
Assay name	Total RNA - hypoxia stress
GSE experiment	GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress

Microarray experiments to specifically-expressed genes

GSM ID GSM40553 Assay name Total RNA - hypoxia stress GSE experiment GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress

GSM ID GSM40553

Assay name Total RNA - hypoxia stress

GSE experiment GSE2218: Changes in transcript abundance and association with large polysomes in response to hypoxia stress