CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM39199

Assay name Col_C1

GSE experiment GSE2169: rre1 and rre2 mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
102.4 99.9 209.1 At1g23730 838983 BCA3 (BETA CARBONIC ANHYDRASE 4) F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:cytosol, plasma membrane, membrane;BOPFMA O.I. C.G. H.G.
97.3 99.9 496.6 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. O.I. C.G. H.G.
93.2 99.9 219.4 At5g61160 836237 AACT1 (anthocyanin 5-aromatic acyltransferase 1) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
82.8 99.9 489.4 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV O.I. C.G. H.G.
66.5 99.8 53.5 At2g04460 814986 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
66.1 99.8 433.1 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
59.9 99.8 35.2 At3g52820 824448 PAP22 (PURPLE ACID PHOSPHATASE 22) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA O.I. C.G. H.G.
57.0 99.8 115.5 At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
50.8 99.8 131.6 At5g39110 833904 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
45.9 99.8 122.4 At4g19810 827725 glycosyl hydrolase family 18 protein F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA O.I. C.G. H.G.
42.5 99.8 55.6 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
41.8 99.8 17.4 At2g43580 818960 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV O.I. C.G. H.G.
38.7 99.8 57.8 At3g03530 821243 NPC4 (NONSPECIFIC PHOSPHOLIPASE C4) PHOSPHOESTERASE FAMILY PROTEIN, NPC4 is significantly induced upon phosphate starvation and plays an important role in the supply of inorganic phosphate and diacylglycerol from membrane-phospholipids during phosphate deprivation. O.I. C.G. H.G.
37.7 99.7 140.2 At3g61990 825372 O-methyltransferase family 3 protein F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA O.I. C.G. H.G.
37.6 99.7 138.8 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
37.6 99.7 38.3 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.1 99.7 349.6 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
33.5 99.7 586.3 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. O.I. C.G. H.G.
33.1 99.7 130.4 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
32.7 99.7 14.2 At1g53340 841769 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM O.I. C.G. H.G.
32.3 99.7 97.9 At5g20790 832202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
31.6 99.7 183.1 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
30.9 99.7 108.2 At5g01220 831888 SQD2 (sulfoquinovosyldiacylglycerol 2) involved in sulfolipid biosynthesis O.I. C.G. H.G.
29.2 99.7 23.2 At1g07260 837237 UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3) F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
27.7 99.7 104.3 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. O.I. C.G. H.G.
27.4 99.7 14.0 At5g09470 830806 mitochondrial substrate carrier family protein F:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV O.I. C.G. H.G.
25.6 99.7 32.6 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family O.I. C.G. H.G.
25.3 99.6 406.0 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
25.0 99.6 185.7 At4g02270 828083 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.0 99.6 89.3 At2g18210 816336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.8 99.6 207.7 At1g05240 839237 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB O.I. C.G. H.G.
22.9 99.6 42.0 At4g25790 828684 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA O.I. C.G. H.G.
22.7 99.6 47.2 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
21.7 99.6 260.3 At5g44420 834469 PDF1.2 Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
21.7 99.6 44.2 At5g58390 835952 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
21.6 99.6 116.3 At3g56200 824786 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
21.3 99.6 36.2 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
21.1 99.6 14.4 At2g32830 817844 PHT5 phosphate transporter O.I. C.G. H.G.
19.9 99.6 58.9 At3g49960 824158 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
19.8 99.6 325.0 At4g34200 829568 EDA9 (embryo sac development arrest 9) F:ATP binding;P:megagametogenesis;C:mitochondrion, chloroplast, membrane;BOFMPAV O.I. C.G. H.G.
18.2 99.5 93.8 At3g23190 821897 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
18.0 99.5 73.0 At2g11810 815657 MGDC MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions. O.I. C.G. H.G.
17.6 99.5 248.6 At3g13110 820499 ATSERAT2 Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. O.I. C.G. H.G.
17.6 99.5 108.4 At4g08770 826447 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POF O.I. C.G. H.G.
17.4 99.5 41.6 At1g34510 840353 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
17.2 99.5 107.4 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
17.2 99.5 54.5 At1g64710 842779 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.
17.0 99.5 103.5 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB O.I. C.G. H.G.
17.0 99.5 52.4 At4g29700 829091 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV O.I. C.G. H.G.
16.1 99.5 99.1 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. O.I. C.G. H.G.
16.0 99.5 36.6 At1g23140 838922 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO O.I. C.G. H.G.
15.9 99.5 300.0 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
15.9 99.5 86.4 At1g70810 843418 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
15.6 99.5 160.8 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
15.5 99.5 13.7 At3g44520 - - O.I. C.G. H.G.
15.4 99.5 17.1 At5g47740 834825 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.1 99.4 15.3 At3g43110 823370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.9 99.4 76.7 At5g63680 836488 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFA O.I. C.G. H.G.
14.9 99.4 29.6 At1g70690 843406 HWI1 (HOPW1-1-INDUCED GENE1) Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. C.G. H.G.
14.6 99.4 63.9 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
14.6 99.4 23.4 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.
14.5 99.4 16.9 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
14.4 99.4 205.2 At4g21830 828271 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
14.3 99.4 93.7 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
14.2 99.4 119.8 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.
14.2 99.4 27.5 At3g04530 819609 PPCK2 Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light. O.I. C.G. H.G.
13.8 99.4 22.3 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. O.I. C.G. H.G.
13.6 99.4 87.3 At3g47420 823896 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP O.I. C.G. H.G.
13.5 99.4 94.7 At5g18470 831965 curculin-like (mannose-binding) lectin family protein F:sugar binding;P:biological_process unknown;C:plant-type cell wall;P O.I. C.G. H.G.
13.5 99.4 25.1 At1g70170 843353 MMP (MATRIX METALLOPROTEINASE) mutant has Late flowering; Early senescence; Matrix Metalloproteinase O.I. C.G. H.G.
13.5 99.4 20.2 At1g44050 841006 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
13.4 99.4 42.9 At5g36220 833619 CYP81D1 (CYTOCHROME P450 81D1) member of CYP81D O.I. C.G. H.G.
13.4 99.4 29.1 At2g18750 816390 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.1 99.4 215.7 At1g53310 841765 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. O.I. C.G. H.G.
13.1 99.4 123.0 At4g26010 828707 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
12.8 99.3 165.3 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
12.8 99.3 23.3 At3g21500 821704 1-deoxy-D-xylulose-5-phosphate synthase Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. O.I. C.G. H.G.
12.8 99.3 8.1 At1g55430 841990 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
12.7 99.3 204.2 At2g26020 817143 PDF1.2b (plant defensin 1.2b) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
12.6 99.3 41.3 At1g13750 837935 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF O.I. C.G. H.G.
12.6 99.3 7.4 At1g76430 843976 phosphate transporter family protein F:phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:membrane;BFMPOA O.I. C.G. H.G.
12.5 99.3 277.5 At3g16530 820901 legume lectin family protein Lectin like protein whose expression is induced upon treatment with chitin oligomers. O.I. C.G. H.G.
12.4 99.3 37.1 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.3 99.3 89.7 At4g05390 825887 ATRFNR1 (ROOT FNR 1) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
12.2 99.3 24.3 At1g33700 840261 catalytic/ glucosylceramidase F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BPMOA O.I. C.G. H.G.
12.1 99.3 53.0 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
12.1 99.3 34.6 At2g47130 819326 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
11.9 99.3 134.5 At5g20150 832137 SPX1 (SPX DOMAIN GENE 1) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA O.I. C.G. H.G.
11.9 99.3 103.1 At1g17745 838352 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) encodes a 3-Phosphoglycerate dehydrogenase O.I. C.G. H.G.
11.9 99.3 58.8 At5g05500 830433 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.9 99.3 9.7 At3g12540 820433 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA O.I. C.G. H.G.
11.8 99.3 460.7 At1g73330 843668 ATDR4 encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level. O.I. C.G. H.G.
11.8 99.3 19.0 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
11.8 99.3 10.2 At4g04990 825841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV O.I. C.G. H.G.
11.7 99.3 48.9 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.6 99.3 105.6 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
11.6 99.3 18.8 At5g24140 832479 SQP2 Encodes a protein with similarity to squalene monoxygenases. O.I. C.G. H.G.
11.5 99.3 139.1 At1g61800 842477 GPT2 glucose6-Phosphate/phosphate transporter 2 O.I. C.G. H.G.
11.5 99.3 79.0 At3g13650 820569 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
11.5 99.3 47.4 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
102.4	99.9	209.1	At1g23730	838983	BCA3 (BETA CARBONIC ANHYDRASE 4)	F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:cytosol, plasma membrane, membrane;BOPFMA	O.I.	C.G.	H.G.
97.3	99.9	496.6	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	O.I.	C.G.	H.G.
93.2	99.9	219.4	At5g61160	836237	AACT1 (anthocyanin 5-aromatic acyltransferase 1)	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
82.8	99.9	489.4	At2g43590	818961	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	O.I.	C.G.	H.G.
66.5	99.8	53.5	At2g04460	814986	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
66.1	99.8	433.1	At4g33720	829514	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
59.9	99.8	35.2	At3g52820	824448	PAP22 (PURPLE ACID PHOSPHATASE 22)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA	O.I.	C.G.	H.G.
57.0	99.8	115.5	At1g49570	841381	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
50.8	99.8	131.6	At5g39110	833904	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
45.9	99.8	122.4	At4g19810	827725	glycosyl hydrolase family 18 protein	F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA	O.I.	C.G.	H.G.
42.5	99.8	55.6	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
41.8	99.8	17.4	At2g43580	818960	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	O.I.	C.G.	H.G.
38.7	99.8	57.8	At3g03530	821243	NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)	PHOSPHOESTERASE FAMILY PROTEIN, NPC4 is significantly induced upon phosphate starvation and plays an important role in the supply of inorganic phosphate and diacylglycerol from membrane-phospholipids during phosphate deprivation.	O.I.	C.G.	H.G.
37.7	99.7	140.2	At3g61990	825372	O-methyltransferase family 3 protein	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	O.I.	C.G.	H.G.
37.6	99.7	138.8	At4g22610	828357	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
37.6	99.7	38.3	At1g19200	838503	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.1	99.7	349.6	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
33.5	99.7	586.3	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	O.I.	C.G.	H.G.
33.1	99.7	130.4	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
32.7	99.7	14.2	At1g53340	841769	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM	O.I.	C.G.	H.G.
32.3	99.7	97.9	At5g20790	832202	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
31.6	99.7	183.1	At1g73010	843632	phosphatase	F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
30.9	99.7	108.2	At5g01220	831888	SQD2 (sulfoquinovosyldiacylglycerol 2)	involved in sulfolipid biosynthesis	O.I.	C.G.	H.G.
29.2	99.7	23.2	At1g07260	837237	UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3)	F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
27.7	99.7	104.3	At5g42600	834267	MRN1 (MARNERAL SYNTHASE)	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.	O.I.	C.G.	H.G.
27.4	99.7	14.0	At5g09470	830806	mitochondrial substrate carrier family protein	F:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV	O.I.	C.G.	H.G.
25.6	99.7	32.6	At5g42580	834265	CYP705A12	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
25.3	99.6	406.0	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
25.0	99.6	185.7	At4g02270	828083	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.0	99.6	89.3	At2g18210	816336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.8	99.6	207.7	At1g05240	839237	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB	O.I.	C.G.	H.G.
22.9	99.6	42.0	At4g25790	828684	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA	O.I.	C.G.	H.G.
22.7	99.6	47.2	At5g41280	834129	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
21.7	99.6	260.3	At5g44420	834469	PDF1.2	Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
21.7	99.6	44.2	At5g58390	835952	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
21.6	99.6	116.3	At3g56200	824786	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
21.3	99.6	36.2	At5g22410	832302	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
21.1	99.6	14.4	At2g32830	817844	PHT5	phosphate transporter	O.I.	C.G.	H.G.
19.9	99.6	58.9	At3g49960	824158	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
19.8	99.6	325.0	At4g34200	829568	EDA9 (embryo sac development arrest 9)	F:ATP binding;P:megagametogenesis;C:mitochondrion, chloroplast, membrane;BOFMPAV	O.I.	C.G.	H.G.
18.2	99.5	93.8	At3g23190	821897	lesion inducing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
18.0	99.5	73.0	At2g11810	815657	MGDC	MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.	O.I.	C.G.	H.G.
17.6	99.5	248.6	At3g13110	820499	ATSERAT2	Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.	O.I.	C.G.	H.G.
17.6	99.5	108.4	At4g08770	826447	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POF	O.I.	C.G.	H.G.
17.4	99.5	41.6	At1g34510	840353	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
17.2	99.5	107.4	At5g67400	836876	peroxidase 73 (PER73) (P73) (PRXR11)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
17.2	99.5	54.5	At1g64710	842779	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
17.0	99.5	103.5	At5g19890	832111	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB	O.I.	C.G.	H.G.
17.0	99.5	52.4	At4g29700	829091	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV	O.I.	C.G.	H.G.
16.1	99.5	99.1	At4g25820	828687	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.	O.I.	C.G.	H.G.
16.0	99.5	36.6	At1g23140	838922	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO	O.I.	C.G.	H.G.
15.9	99.5	300.0	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
15.9	99.5	86.4	At1g70810	843418	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
15.6	99.5	160.8	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
15.5	99.5	13.7	At3g44520		-	-	O.I.	C.G.	H.G.
15.4	99.5	17.1	At5g47740	834825	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.1	99.4	15.3	At3g43110	823370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.9	99.4	76.7	At5g63680	836488	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFA	O.I.	C.G.	H.G.
14.9	99.4	29.6	At1g70690	843406	HWI1 (HOPW1-1-INDUCED GENE1)	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	C.G.	H.G.
14.6	99.4	63.9	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
14.6	99.4	23.4	At2g02680	814797	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.
14.5	99.4	16.9	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
14.4	99.4	205.2	At4g21830	828271	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
14.3	99.4	93.7	At1g64590	842767	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
14.2	99.4	119.8	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.
14.2	99.4	27.5	At3g04530	819609	PPCK2	Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light.	O.I.	C.G.	H.G.
13.8	99.4	22.3	At3g05630	819730	PLDP2	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.	O.I.	C.G.	H.G.
13.6	99.4	87.3	At3g47420	823896	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP	O.I.	C.G.	H.G.
13.5	99.4	94.7	At5g18470	831965	curculin-like (mannose-binding) lectin family protein	F:sugar binding;P:biological_process unknown;C:plant-type cell wall;P	O.I.	C.G.	H.G.
13.5	99.4	25.1	At1g70170	843353	MMP (MATRIX METALLOPROTEINASE)	mutant has Late flowering; Early senescence; Matrix Metalloproteinase	O.I.	C.G.	H.G.
13.5	99.4	20.2	At1g44050	841006	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
13.4	99.4	42.9	At5g36220	833619	CYP81D1 (CYTOCHROME P450 81D1)	member of CYP81D	O.I.	C.G.	H.G.
13.4	99.4	29.1	At2g18750	816390	calmodulin-binding protein	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.1	99.4	215.7	At1g53310	841765	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.	O.I.	C.G.	H.G.
13.1	99.4	123.0	At4g26010	828707	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
12.8	99.3	165.3	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
12.8	99.3	23.3	At3g21500	821704	1-deoxy-D-xylulose-5-phosphate synthase	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	O.I.	C.G.	H.G.
12.8	99.3	8.1	At1g55430	841990	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
12.7	99.3	204.2	At2g26020	817143	PDF1.2b (plant defensin 1.2b)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
12.6	99.3	41.3	At1g13750	837935	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF	O.I.	C.G.	H.G.
12.6	99.3	7.4	At1g76430	843976	phosphate transporter family protein	F:phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:membrane;BFMPOA	O.I.	C.G.	H.G.
12.5	99.3	277.5	At3g16530	820901	legume lectin family protein	Lectin like protein whose expression is induced upon treatment with chitin oligomers.	O.I.	C.G.	H.G.
12.4	99.3	37.1	At5g22555	832318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.3	99.3	89.7	At4g05390	825887	ATRFNR1 (ROOT FNR 1)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
12.2	99.3	24.3	At1g33700	840261	catalytic/ glucosylceramidase	F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BPMOA	O.I.	C.G.	H.G.
12.1	99.3	53.0	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
12.1	99.3	34.6	At2g47130	819326	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
11.9	99.3	134.5	At5g20150	832137	SPX1 (SPX DOMAIN GENE 1)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA	O.I.	C.G.	H.G.
11.9	99.3	103.1	At1g17745	838352	PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE)	encodes a 3-Phosphoglycerate dehydrogenase	O.I.	C.G.	H.G.
11.9	99.3	58.8	At5g05500	830433	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.9	99.3	9.7	At3g12540	820433	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA	O.I.	C.G.	H.G.
11.8	99.3	460.7	At1g73330	843668	ATDR4	encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.	O.I.	C.G.	H.G.
11.8	99.3	19.0	At5g52670	835344	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.8	99.3	10.2	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	O.I.	C.G.	H.G.
11.7	99.3	48.9	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.6	99.3	105.6	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
11.6	99.3	18.8	At5g24140	832479	SQP2	Encodes a protein with similarity to squalene monoxygenases.	O.I.	C.G.	H.G.
11.5	99.3	139.1	At1g61800	842477	GPT2	glucose6-Phosphate/phosphate transporter 2	O.I.	C.G.	H.G.
11.5	99.3	79.0	At3g13650	820569	disease resistance response	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
11.5	99.3	47.4	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.

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GSM ID	GSM39199
Assay name	Col_C1
GSE experiment	GSE2169: rre1 and rre2 mutants

Microarray experiments to specifically-expressed genes

GSM ID GSM39199 Assay name Col_C1 GSE experiment GSE2169: rre1 and rre2 mutants

GSM ID GSM39199

Assay name Col_C1

GSE experiment GSE2169: rre1 and rre2 mutants