CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM38670

Assay name DSNP

GSE experiment GSE2268: Arabidopsis polysome microarray

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
168.8 100.0 48.6 At2g29160 3768464 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
161.6 99.9 135.6 At5g15190 831371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
160.5 99.9 69.2 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. O.I. C.G. H.G.
145.8 99.9 35.6 At3g24750 822073 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. C.G. H.G.
143.1 99.9 72.0 At1g28610 839761 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM O.I. C.G. H.G.
120.5 99.9 104.2 At2g35820 818155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
116.5 99.9 99.9 At4g18975 827633 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
97.6 99.9 220.1 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV O.I. C.G. H.G.
96.3 99.9 66.4 At3g05340 819698 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
85.9 99.9 58.3 At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO O.I. C.G. H.G.
85.2 99.9 69.1 At3g56080 824774 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
81.5 99.9 31.4 At4g34650 829617 SQS2 (SQUALENE SYNTHASE 2) Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. O.I. C.G. H.G.
78.3 99.9 98.9 At5g15360 831388 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
71.3 99.9 25.2 At5g45630 834603 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
68.0 99.9 34.2 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. O.I. C.G. H.G.
67.7 99.9 83.2 At5g27730 832835 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMP O.I. C.G. H.G.
67.3 99.8 213.1 At2g41190 818718 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV O.I. C.G. H.G.
66.8 99.8 99.8 At5g03230 831900 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
58.9 99.8 165.4 At5g13170 831156 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
58.8 99.8 128.4 At5g01520 831747 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF O.I. C.G. H.G.
58.7 99.8 119.7 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
58.4 99.8 109.6 At4g34000 829547 ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3) Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. O.I. C.G. H.G.
55.6 99.8 29.8 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
52.6 99.8 33.9 At5g37130 833685 binding F:binding;P:biological_process unknown;C:apoplast;OBAMFP O.I. C.G. H.G.
52.5 99.8 55.7 At5g10930 830960 CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) Encodes CBL-interacting protein kinase 5 (CIPK5). O.I. C.G. H.G.
49.6 99.8 52.7 At3g62750 825450 BGLU8 (BETA GLUCOSIDASE 8) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA O.I. C.G. H.G.
46.2 99.8 70.3 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
45.8 99.8 93.9 At4g18390 827568 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
45.0 99.8 18.9 At5g11590 831031 TINY2 (TINY2) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
44.4 99.8 168.5 At1g72770 843609 HAB1 (HOMOLOGY TO ABI1) mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C O.I. C.G. H.G.
44.3 99.8 84.2 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
41.7 99.8 86.7 At1g22430 838849 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
41.5 99.8 144.9 At1g26920 839582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
40.4 99.8 194.7 At1g68490 843178 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
40.3 99.8 171.5 At2g22240 816757 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
39.2 99.8 17.0 At5g43840 834406 AT-HSFA6A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
38.8 99.8 124.5 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
35.6 99.7 69.5 At4g36980 829852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVB O.I. C.G. H.G.
35.5 99.7 207.1 At2g19810 816500 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
35.2 99.7 53.4 At5g57050 835809 ABI2 (ABA INSENSITIVE 2) Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. O.I. C.G. H.G.
34.6 99.7 101.6 At5g02810 831793 PRR7 (PSEUDO-RESPONSE REGULATOR 7) PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. O.I. C.G. H.G.
34.5 99.7 35.7 At5g60940 836215 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
32.5 99.7 21.1 At1g53100 841744 acetylglucosaminyltransferase F:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVO O.I. C.G. H.G.
32.2 99.7 166.4 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
32.2 99.7 57.9 At3g05640 819731 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFV O.I. C.G. H.G.
31.8 99.7 34.1 At2g21590 816697 APL4 Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described. O.I. C.G. H.G.
31.3 99.7 86.3 At1g79970 844337 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
31.2 99.7 66.5 At5g20380 832160 PHT4 Encodes an inorganic phosphate transporter (PHT4;5). O.I. C.G. H.G.
30.6 99.7 291.3 At2g39800 818566 P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner. O.I. C.G. H.G.
29.8 99.7 24.2 At1g55750 842024 transcription factor-related F:unknown;P:unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
29.5 99.7 83.5 At4g26480 828754 KH domain-containing protein F:nicotianamine synthase activity, RNA binding, nucleic acid binding;P:nicotianamine biosynthetic process;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
29.5 99.7 29.4 At1g79460 844284 GA2 (GA REQUIRING 2) Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway. O.I. C.G. H.G.
28.9 99.7 10.8 At2g39240 818509 RNA polymerase I transcription factor/ binding F:RNA polymerase I transcription factor activity, binding;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
27.9 99.7 178.6 At2g47770 819389 benzodiazepine receptor-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAF O.I. C.G. H.G.
27.8 99.7 236.3 At3g11410 820314 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA. O.I. C.G. H.G.
27.5 99.7 49.4 At3g15780 820821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
26.4 99.7 28.8 At4g34540 829605 isoflavone reductase family protein encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. O.I. C.G. H.G.
26.2 99.7 89.2 At5g61420 836263 MYB28 (myb domain protein 28) Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose. O.I. C.G. H.G.
26.0 99.7 28.7 At5g06440 830532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMB O.I. C.G. H.G.
25.9 99.7 105.6 At4g19390 827680 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA O.I. C.G. H.G.
25.6 99.7 91.7 At1g79270 844267 ECT8 (evolutionarily conserved C-terminal region 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
25.4 99.6 31.3 At2g37840 818361 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOFBVA O.I. C.G. H.G.
23.5 99.6 53.3 At2g07739 815412 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
23.4 99.6 126.0 At5g56140 835713 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
23.0 99.6 158.7 At1g64680 842776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
22.9 99.6 17.5 At5g59650 836086 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
22.8 99.6 13.4 At4g16920 827400 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA O.I. C.G. H.G.
22.7 99.6 24.1 At5g56520 835753 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.5 99.6 30.3 At3g57540 824921 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
22.4 99.6 90.8 At3g62190 825392 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMPFA O.I. C.G. H.G.
22.4 99.6 61.9 At2g38610 818443 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
22.3 99.6 117.5 At2g36390 818212 SBE2.1 (starch branching enzyme 2.1) Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues. O.I. C.G. H.G.
22.2 99.6 63.6 At1g67300 843050 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV O.I. C.G. H.G.
21.8 99.6 36.8 At4g00040 828224 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF O.I. C.G. H.G.
21.1 99.6 68.2 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. O.I. C.G. H.G.
20.6 99.6 32.2 At1g01770 837323 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;OBFMP O.I. C.G. H.G.
20.1 99.6 222.4 At5g22270 832287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
20.1 99.6 72.0 At5g23610 832427 - F:unknown;P:biological_process unknown;C:unknown;POBFAM O.I. C.G. H.G.
19.8 99.6 61.5 At2g43010 818903 PIF4 (phytochrome interacting factor 4) Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. O.I. C.G. H.G.
19.5 99.6 18.8 At5g48090 834861 ELP1 (EDM2-LIKE PROTEIN1) F:unknown;P:unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
19.5 99.6 17.1 At5g25390 832611 SHN2 (shine2) encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
19.5 99.6 9.1 At3g03480 821249 CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase) F:acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;P:green leaf volatile biosynthetic process;C:cellular_component unknown;PF O.I. C.G. H.G.
19.1 99.6 29.8 At3g51750 824338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.0 99.5 120.5 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
18.9 99.5 51.6 At1g04830 839404 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPB O.I. C.G. H.G.
18.8 99.5 138.4 At5g52300 835306 LTI65 (LOW-TEMPERATURE-INDUCED 65) encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi. O.I. C.G. H.G.
18.8 99.5 138.2 At1g72030 843534 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO O.I. C.G. H.G.
18.8 99.5 41.5 At1g79520 844290 cation efflux family protein F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM O.I. C.G. H.G.
18.8 99.5 40.6 At5g12840 831124 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
18.8 99.5 34.2 At2g41870 818787 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
18.7 99.5 40.9 At3g21270 821681 ADOF2 Encodes Dof zinc finger protein adof2. O.I. C.G. H.G.
18.6 99.5 155.4 At5g43150 834332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
18.6 99.5 20.4 At2g34850 818050 MEE25 (maternal effect embryo arrest 25) F:coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;P:embryonic development ending in seed dormancy, pollen tube development, nucleotide-sugar metabolic process;C:cellular_component unknown;BOPMAFV O.I. C.G. H.G.
18.3 99.5 128.7 At4g37980 829954 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to bacterium, plant-type hypersensitive response;C:unknown;BOPFMAV O.I. C.G. H.G.
18.3 99.5 76.6 At3g26000 822197 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
18.3 99.5 64.4 At4g35300 829684 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plasma membrane, vacuole, membrane;BFMPOA O.I. C.G. H.G.
18.1 99.5 85.7 At2g33590 817925 cinnamoyl-CoA reductase family F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:response to cadmium ion, lignin biosynthetic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
18.0 99.5 103.1 At2g04240 814962 XERICO Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. O.I. C.G. H.G.
17.8 99.5 100.6 At5g60850 836206 OBP4 Encodes a zinc finger protein. O.I. C.G. H.G.
17.8 99.5** 56.5 At1g71480 843489 nuclear transport factor 2 (NTF2) family protein F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
168.8	100.0	48.6	At2g29160	3768464	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
161.6	99.9	135.6	At5g15190	831371	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
160.5	99.9	69.2	At1g18710	838453	AtMYB47 (myb domain protein 47)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
145.8	99.9	35.6	At3g24750	822073	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	C.G.	H.G.
143.1	99.9	72.0	At1g28610	839761	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM	O.I.	C.G.	H.G.
120.5	99.9	104.2	At2g35820	818155	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
116.5	99.9	99.9	At4g18975	827633	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
97.6	99.9	220.1	At5g59220	836040	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV	O.I.	C.G.	H.G.
96.3	99.9	66.4	At3g05340	819698	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
85.9	99.9	58.3	At3g13672	820573	seven in absentia (SINA) family protein	F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO	O.I.	C.G.	H.G.
85.2	99.9	69.1	At3g56080	824774	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
81.5	99.9	31.4	At4g34650	829617	SQS2 (SQUALENE SYNTHASE 2)	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	O.I.	C.G.	H.G.
78.3	99.9	98.9	At5g15360	831388	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
71.3	99.9	25.2	At5g45630	834603	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
68.0	99.9	34.2	At2g29090	817457	CYP707A2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	O.I.	C.G.	H.G.
67.7	99.9	83.2	At5g27730	832835	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMP	O.I.	C.G.	H.G.
67.3	99.8	213.1	At2g41190	818718	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV	O.I.	C.G.	H.G.
66.8	99.8	99.8	At5g03230	831900	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
58.9	99.8	165.4	At5g13170	831156	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
58.8	99.8	128.4	At5g01520	831747	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF	O.I.	C.G.	H.G.
58.7	99.8	119.7	At1g57590	842135	carboxylesterase	F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
58.4	99.8	109.6	At4g34000	829547	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.	O.I.	C.G.	H.G.
55.6	99.8	29.8	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
52.6	99.8	33.9	At5g37130	833685	binding	F:binding;P:biological_process unknown;C:apoplast;OBAMFP	O.I.	C.G.	H.G.
52.5	99.8	55.7	At5g10930	830960	CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)	Encodes CBL-interacting protein kinase 5 (CIPK5).	O.I.	C.G.	H.G.
49.6	99.8	52.7	At3g62750	825450	BGLU8 (BETA GLUCOSIDASE 8)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA	O.I.	C.G.	H.G.
46.2	99.8	70.3	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
45.8	99.8	93.9	At4g18390	827568	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
45.0	99.8	18.9	At5g11590	831031	TINY2 (TINY2)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
44.4	99.8	168.5	At1g72770	843609	HAB1 (HOMOLOGY TO ABI1)	mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C	O.I.	C.G.	H.G.
44.3	99.8	84.2	At4g02130	827438	GATL6	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
41.7	99.8	86.7	At1g22430	838849	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
41.5	99.8	144.9	At1g26920	839582	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
40.4	99.8	194.7	At1g68490	843178	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
40.3	99.8	171.5	At2g22240	816757	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
39.2	99.8	17.0	At5g43840	834406	AT-HSFA6A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
38.8	99.8	124.5	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
35.6	99.7	69.5	At4g36980	829852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVB	O.I.	C.G.	H.G.
35.5	99.7	207.1	At2g19810	816500	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
35.2	99.7	53.4	At5g57050	835809	ABI2 (ABA INSENSITIVE 2)	Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.	O.I.	C.G.	H.G.
34.6	99.7	101.6	At5g02810	831793	PRR7 (PSEUDO-RESPONSE REGULATOR 7)	PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels.	O.I.	C.G.	H.G.
34.5	99.7	35.7	At5g60940	836215	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
32.5	99.7	21.1	At1g53100	841744	acetylglucosaminyltransferase	F:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVO	O.I.	C.G.	H.G.
32.2	99.7	166.4	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
32.2	99.7	57.9	At3g05640	819731	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFV	O.I.	C.G.	H.G.
31.8	99.7	34.1	At2g21590	816697	APL4	Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	O.I.	C.G.	H.G.
31.3	99.7	86.3	At1g79970	844337	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
31.2	99.7	66.5	At5g20380	832160	PHT4	Encodes an inorganic phosphate transporter (PHT4;5).	O.I.	C.G.	H.G.
30.6	99.7	291.3	At2g39800	818566	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)	encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.	O.I.	C.G.	H.G.
29.8	99.7	24.2	At1g55750	842024	transcription factor-related	F:unknown;P:unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
29.5	99.7	83.5	At4g26480	828754	KH domain-containing protein	F:nicotianamine synthase activity, RNA binding, nucleic acid binding;P:nicotianamine biosynthetic process;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
29.5	99.7	29.4	At1g79460	844284	GA2 (GA REQUIRING 2)	Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway.	O.I.	C.G.	H.G.
28.9	99.7	10.8	At2g39240	818509	RNA polymerase I transcription factor/ binding	F:RNA polymerase I transcription factor activity, binding;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
27.9	99.7	178.6	At2g47770	819389	benzodiazepine receptor-related	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAF	O.I.	C.G.	H.G.
27.8	99.7	236.3	At3g11410	820314	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.	O.I.	C.G.	H.G.
27.5	99.7	49.4	At3g15780	820821	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
26.4	99.7	28.8	At4g34540	829605	isoflavone reductase family protein	encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.	O.I.	C.G.	H.G.
26.2	99.7	89.2	At5g61420	836263	MYB28 (myb domain protein 28)	Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.	O.I.	C.G.	H.G.
26.0	99.7	28.7	At5g06440	830532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMB	O.I.	C.G.	H.G.
25.9	99.7	105.6	At4g19390	827680	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA	O.I.	C.G.	H.G.
25.6	99.7	91.7	At1g79270	844267	ECT8 (evolutionarily conserved C-terminal region 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
25.4	99.6	31.3	At2g37840	818361	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOFBVA	O.I.	C.G.	H.G.
23.5	99.6	53.3	At2g07739	815412	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.4	99.6	126.0	At5g56140	835713	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
23.0	99.6	158.7	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
22.9	99.6	17.5	At5g59650	836086	leucine-rich repeat protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
22.8	99.6	13.4	At4g16920	827400	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA	O.I.	C.G.	H.G.
22.7	99.6	24.1	At5g56520	835753	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.5	99.6	30.3	At3g57540	824921	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
22.4	99.6	90.8	At3g62190	825392	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMPFA	O.I.	C.G.	H.G.
22.4	99.6	61.9	At2g38610	818443	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
22.3	99.6	117.5	At2g36390	818212	SBE2.1 (starch branching enzyme 2.1)	Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues.	O.I.	C.G.	H.G.
22.2	99.6	63.6	At1g67300	843050	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV	O.I.	C.G.	H.G.
21.8	99.6	36.8	At4g00040	828224	chalcone and stilbene synthase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF	O.I.	C.G.	H.G.
21.1	99.6	68.2	At1g12860	837843	SCRM2 (SCREAM 2)	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	O.I.	C.G.	H.G.
20.6	99.6	32.2	At1g01770	837323	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;OBFMP	O.I.	C.G.	H.G.
20.1	99.6	222.4	At5g22270	832287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
20.1	99.6	72.0	At5g23610	832427	-	F:unknown;P:biological_process unknown;C:unknown;POBFAM	O.I.	C.G.	H.G.
19.8	99.6	61.5	At2g43010	818903	PIF4 (phytochrome interacting factor 4)	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.	O.I.	C.G.	H.G.
19.5	99.6	18.8	At5g48090	834861	ELP1 (EDM2-LIKE PROTEIN1)	F:unknown;P:unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
19.5	99.6	17.1	At5g25390	832611	SHN2 (shine2)	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
19.5	99.6	9.1	At3g03480	821249	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	F:acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;P:green leaf volatile biosynthetic process;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
19.1	99.6	29.8	At3g51750	824338	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.0	99.5	120.5	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
18.9	99.5	51.6	At1g04830	839404	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPB	O.I.	C.G.	H.G.
18.8	99.5	138.4	At5g52300	835306	LTI65 (LOW-TEMPERATURE-INDUCED 65)	encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi.	O.I.	C.G.	H.G.
18.8	99.5	138.2	At1g72030	843534	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO	O.I.	C.G.	H.G.
18.8	99.5	41.5	At1g79520	844290	cation efflux family protein	F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM	O.I.	C.G.	H.G.
18.8	99.5	40.6	At5g12840	831124	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
18.8	99.5	34.2	At2g41870	818787	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
18.7	99.5	40.9	At3g21270	821681	ADOF2	Encodes Dof zinc finger protein adof2.	O.I.	C.G.	H.G.
18.6	99.5	155.4	At5g43150	834332	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
18.6	99.5	20.4	At2g34850	818050	MEE25 (maternal effect embryo arrest 25)	F:coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;P:embryonic development ending in seed dormancy, pollen tube development, nucleotide-sugar metabolic process;C:cellular_component unknown;BOPMAFV	O.I.	C.G.	H.G.
18.3	99.5	128.7	At4g37980	829954	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to bacterium, plant-type hypersensitive response;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
18.3	99.5	76.6	At3g26000	822197	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
18.3	99.5	64.4	At4g35300	829684	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plasma membrane, vacuole, membrane;BFMPOA	O.I.	C.G.	H.G.
18.1	99.5	85.7	At2g33590	817925	cinnamoyl-CoA reductase family	F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:response to cadmium ion, lignin biosynthetic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
18.0	99.5	103.1	At2g04240	814962	XERICO	Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism.	O.I.	C.G.	H.G.
17.8	99.5	100.6	At5g60850	836206	OBP4	Encodes a zinc finger protein.	O.I.	C.G.	H.G.
17.8	99.5	56.5	At1g71480	843489	nuclear transport factor 2 (NTF2) family protein	F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO	O.I.	C.G.	H.G.

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GSM ID	GSM38670
Assay name	DSNP
GSE experiment	GSE2268: Arabidopsis polysome microarray

Microarray experiments to specifically-expressed genes

GSM ID GSM38670 Assay name DSNP GSE experiment GSE2268: Arabidopsis polysome microarray

GSM ID GSM38670

Assay name DSNP

GSE experiment GSE2268: Arabidopsis polysome microarray