Microarray experiments to specifically-expressed genes

GSM ID GSM38669
Assay name NSPS
GSE experiment GSE2268: Arabidopsis polysome microarray

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
40.399.817.9At5g11590831031TINY2 (TINY2)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
37.699.7103.8At4g12980826910auxin-responsive protein, putativeF:unknown;P:multicellular organismal development;C:membrane;PMFOBO.I.C.G.H.G.
35.399.7174.2At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
30.099.720.4At1g78440844180ATGA2OX1 (gibberellin 2-oxidase 1)Encodes a gibberellin 2-oxidase.O.I.C.G.H.G.
25.899.7159.8At2g36870818259xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOAO.I.C.G.H.G.
23.799.630.9At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
23.199.6199.2At1g10370837576ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMFO.I.C.G.H.G.
22.299.643.1At5g01790831868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
21.299.656.9At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
20.299.646.2At4g27820828895BGLU9 (BETA GLUCOSIDASE 9)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFAO.I.C.G.H.G.
19.299.660.8At4g18390827568TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
19.299.617.2At5g41900834195hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
19.099.5119.2At3g21560821710UGT84A2Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).O.I.C.G.H.G.
18.399.5175.3At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
18.399.531.0At2g15320816021leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;PMOBFAO.I.C.G.H.G.
18.199.568.3At1g17050838275SPS2 (Solanesyl diphosphate synthase 2)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
17.299.561.9At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
17.299.558.4At2g35960818169NHL12Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.O.I.C.G.H.G.
15.999.533.8At4g09350826517DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAVO.I.C.G.H.G.
15.399.450.1At2g19860816505HXK2 (HEXOKINASE 2)Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses.O.I.C.G.H.G.
15.299.418.3At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
14.899.4103.9At2g22240816757MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
14.799.484.4At1g52590841691-F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOPO.I.C.G.H.G.
14.799.431.1At3g09650820122HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.O.I.C.G.H.G.
14.599.4153.4At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMO.I.C.G.H.G.
14.599.440.9At2g44940819103AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
14.599.436.2At5g59350836054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.499.463.6At5g45820834622CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.O.I.C.G.H.G.
14.299.472.5At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.O.I.C.G.H.G.
13.999.4126.4At4g37760829932SQE3 (squalene epoxidase 3)F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPAO.I.C.G.H.G.
13.899.4210.6At3g59400825109GUN4GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.O.I.C.G.H.G.
13.799.455.5At4g37310829886CYP81H1member of CYP81HO.I.C.G.H.G.
13.699.448.9At2g36630818235unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPAO.I.C.G.H.G.
13.499.448.9At1g18360838417hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOPMFVAO.I.C.G.H.G.
13.299.437.5At1g13650837926-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
13.199.444.9At5g62220836343exostosin family proteinF:catalytic activity;P:unknown;C:chloroplast, membrane;POMO.I.C.G.H.G.
12.699.338.4At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
12.599.360.5At1g70580843395AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1O.I.C.G.H.G.
12.599.333.7At4g35320829686unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.499.3210.8At4g39800830139MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
12.499.388.6At3g01060821278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOFPO.I.C.G.H.G.
12.499.375.6At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.O.I.C.G.H.G.
12.499.318.1At5g55580835652mitochondrial transcription termination factor family protein / mTERF family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVBO.I.C.G.H.G.
12.299.390.8At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
12.299.335.8At2g41040818703methyltransferase-relatedF:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFMO.I.C.G.H.G.
12.199.397.0At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.C.G.H.G.
12.099.3172.1At5g43850834407ARD4F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFOO.I.C.G.H.G.
11.699.369.2At5g63050836425EMB2759 (embryo defective 2759)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PO.I.C.G.H.G.
11.599.3117.5At1g64860842794SIGA (SIGMA FACTOR A)Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzymeO.I.C.G.H.G.
11.499.335.7At5g54250835513ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.O.I.C.G.H.G.
11.299.2110.6At1g64680842776unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
11.199.214.5At4g35290829682GLUR2 (GLUTAMATE RECEPTOR 2)Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
10.999.238.5At3g19720821509ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5)Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP–ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.O.I.C.G.H.G.
10.999.219.0At5g53200835401TRY (TRIPTYCHON)F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POMO.I.C.G.H.G.
10.899.2149.0At3g21670821721nitrate transporter (NTP3)F:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
10.899.2102.5At2g24420816978DNA repair ATPase-relatedF:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPAVO.I.C.G.H.G.
10.899.293.7At5g09870830847CESA5 (CELLULOSE SYNTHASE 5)Encodes a cellulose synthase isomer, related to CESA6.O.I.C.G.H.G.
10.899.213.7At5g40060834003ATP binding / nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:apoptosis;C:unknownO.I.C.G.H.G.
10.799.2151.3At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
10.699.2237.9At4g26850828792VTC2 (vitamin c defective 2)Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.O.I.C.G.H.G.
10.699.246.7At1g29700839847unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPFO.I.C.G.H.G.
10.599.2189.7At5g48490834905protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
10.599.244.2At1g21590838760protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
10.299.244.1At3g14720820700ATMPK19member of MAP KinaseO.I.C.G.H.G.
10.299.214.5At5g17600831626zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
10.299.213.5At4g35270829680RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POMFBVO.I.C.G.H.G.
10.099.2168.7At2g38210818400PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPMO.I.C.G.H.G.
10.099.223.7At3g56080824774dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
9.999.185.6At4g03050828104AOP3Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.O.I.C.G.H.G.
9.899.1147.9At5g35970833589DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPAO.I.C.G.H.G.
9.899.152.8At5g64170836538dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMAO.I.C.G.H.G.
9.799.172.0At1g04530839500bindingF:binding;P:unknown;C:unknown;PBOMAFO.I.C.G.H.G.
9.799.112.0At3g17640821031leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;PMOBFAO.I.C.G.H.G.
9.699.142.7At3g02830821230ZFN1 (ZINC FINGER PROTEIN 1)Encodes a zinc finger protein.O.I.C.G.H.G.
9.699.112.9At2g29090817457CYP707A2Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.O.I.C.G.H.G.
9.399.164.4At2g36145818187unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.C.G.H.G.
9.399.134.7At5g14880831340potassium transporter, putativeF:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAVO.I.C.G.H.G.
9.399.123.1At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
9.299.154.9At1g79270844267ECT8 (evolutionarily conserved C-terminal region 8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
9.199.119.5At1g03440839504leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
9.099.161.9At3g11670820339DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).O.I.C.G.H.G.
9.099.134.3At4g24460828548unknown proteinF:unknown;P:unknown;C:chloroplast;OPBMO.I.C.G.H.G.
9.099.114.7At4g04750825811carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
8.999.080.7At1g07280837239bindingF:binding;P:biological_process unknown;C:chloroplast;PBOAFMO.I.C.G.H.G.
8.899.0193.6At1g73600843694methyltransferase/ phosphoethanolamine N-methyltransferaseF:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMVO.I.C.G.H.G.
8.899.085.2At5g67370836872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OBPO.I.C.G.H.G.
8.899.013.0At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
8.699.097.9At5g58260835938-Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage