CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM38669

Assay name NSPS

GSE experiment GSE2268: Arabidopsis polysome microarray

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
40.3 99.8 17.9 At5g11590 831031 TINY2 (TINY2) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
37.6 99.7 103.8 At4g12980 826910 auxin-responsive protein, putative F:unknown;P:multicellular organismal development;C:membrane;PMFOB O.I. C.G. H.G.
35.3 99.7 174.2 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
30.0 99.7 20.4 At1g78440 844180 ATGA2OX1 (gibberellin 2-oxidase 1) Encodes a gibberellin 2-oxidase. O.I. C.G. H.G.
25.8 99.7 159.8 At2g36870 818259 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOA O.I. C.G. H.G.
23.7 99.6 30.9 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
23.1 99.6 199.2 At1g10370 837576 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF O.I. C.G. H.G.
22.2 99.6 43.1 At5g01790 831868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
21.2 99.6 56.9 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
20.2 99.6 46.2 At4g27820 828895 BGLU9 (BETA GLUCOSIDASE 9) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA O.I. C.G. H.G.
19.2 99.6 60.8 At4g18390 827568 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
19.2 99.6 17.2 At5g41900 834195 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
19.0 99.5 119.2 At3g21560 821710 UGT84A2 Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid). O.I. C.G. H.G.
18.3 99.5 175.3 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.3 99.5 31.0 At2g15320 816021 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA O.I. C.G. H.G.
18.1 99.5 68.3 At1g17050 838275 SPS2 (Solanesyl diphosphate synthase 2) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
17.2 99.5 61.9 At1g56430 842096 NAS4 (NICOTIANAMINE SYNTHASE 4) F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO O.I. C.G. H.G.
17.2 99.5 58.4 At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. O.I. C.G. H.G.
15.9 99.5 33.8 At4g09350 826517 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
15.3 99.4 50.1 At2g19860 816505 HXK2 (HEXOKINASE 2) Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses. O.I. C.G. H.G.
15.2 99.4 18.3 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. O.I. C.G. H.G.
14.8 99.4 103.9 At2g22240 816757 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
14.7 99.4 84.4 At1g52590 841691 - F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP O.I. C.G. H.G.
14.7 99.4 31.1 At3g09650 820122 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. O.I. C.G. H.G.
14.5 99.4 153.4 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
14.5 99.4 40.9 At2g44940 819103 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
14.5 99.4 36.2 At5g59350 836054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.4 99.4 63.6 At5g45820 834622 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain. O.I. C.G. H.G.
14.2 99.4 72.5 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
13.9 99.4 126.4 At4g37760 829932 SQE3 (squalene epoxidase 3) F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA O.I. C.G. H.G.
13.8 99.4 210.6 At3g59400 825109 GUN4 GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis. O.I. C.G. H.G.
13.7 99.4 55.5 At4g37310 829886 CYP81H1 member of CYP81H O.I. C.G. H.G.
13.6 99.4 48.9 At2g36630 818235 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA O.I. C.G. H.G.
13.4 99.4 48.9 At1g18360 838417 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOPMFVA O.I. C.G. H.G.
13.2 99.4 37.5 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
13.1 99.4 44.9 At5g62220 836343 exostosin family protein F:catalytic activity;P:unknown;C:chloroplast, membrane;POM O.I. C.G. H.G.
12.6 99.3 38.4 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
12.5 99.3 60.5 At1g70580 843395 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 O.I. C.G. H.G.
12.5 99.3 33.7 At4g35320 829686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.4 99.3 210.8 At4g39800 830139 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
12.4 99.3 88.6 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP O.I. C.G. H.G.
12.4 99.3 75.6 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
12.4 99.3 18.1 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB O.I. C.G. H.G.
12.2 99.3 90.8 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
12.2 99.3 35.8 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM O.I. C.G. H.G.
12.1 99.3 97.0 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
12.0 99.3 172.1 At5g43850 834407 ARD4 F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
11.6 99.3 69.2 At5g63050 836425 EMB2759 (embryo defective 2759) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;P O.I. C.G. H.G.
11.5 99.3 117.5 At1g64860 842794 SIGA (SIGMA FACTOR A) Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme O.I. C.G. H.G.
11.4 99.3 35.7 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. O.I. C.G. H.G.
11.2 99.2 110.6 At1g64680 842776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
11.1 99.2 14.5 At4g35290 829682 GLUR2 (GLUTAMATE RECEPTOR 2) Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
10.9 99.2 38.5 At3g19720 821509 ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5) Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP�ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. O.I. C.G. H.G.
10.9 99.2 19.0 At5g53200 835401 TRY (TRIPTYCHON) F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POM O.I. C.G. H.G.
10.8 99.2 149.0 At3g21670 821721 nitrate transporter (NTP3) F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
10.8 99.2 102.5 At2g24420 816978 DNA repair ATPase-related F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPAV O.I. C.G. H.G.
10.8 99.2 93.7 At5g09870 830847 CESA5 (CELLULOSE SYNTHASE 5) Encodes a cellulose synthase isomer, related to CESA6. O.I. C.G. H.G.
10.8 99.2 13.7 At5g40060 834003 ATP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:apoptosis;C:unknown O.I. C.G. H.G.
10.7 99.2 151.3 At2g40100 818599 LHCB4.3 (light harvesting complex PSII) Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II O.I. C.G. H.G.
10.6 99.2 237.9 At4g26850 828792 VTC2 (vitamin c defective 2) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. O.I. C.G. H.G.
10.6 99.2 46.7 At1g29700 839847 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF O.I. C.G. H.G.
10.5 99.2 189.7 At5g48490 834905 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
10.5 99.2 44.2 At1g21590 838760 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
10.2 99.2 44.1 At3g14720 820700 ATMPK19 member of MAP Kinase O.I. C.G. H.G.
10.2 99.2 14.5 At5g17600 831626 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
10.2 99.2 13.5 At4g35270 829680 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POMFBV O.I. C.G. H.G.
10.0 99.2 168.7 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
10.0 99.2 23.7 At3g56080 824774 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
9.9 99.1 85.6 At4g03050 828104 AOP3 Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. O.I. C.G. H.G.
9.8 99.1 147.9 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.
9.8 99.1 52.8 At5g64170 836538 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMA O.I. C.G. H.G.
9.7 99.1 72.0 At1g04530 839500 binding F:binding;P:unknown;C:unknown;PBOMAF O.I. C.G. H.G.
9.7 99.1 12.0 At3g17640 821031 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA O.I. C.G. H.G.
9.6 99.1 42.7 At3g02830 821230 ZFN1 (ZINC FINGER PROTEIN 1) Encodes a zinc finger protein. O.I. C.G. H.G.
9.6 99.1 12.9 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. O.I. C.G. H.G.
9.3 99.1 64.4 At2g36145 818187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. C.G. H.G.
9.3 99.1 34.7 At5g14880 831340 potassium transporter, putative F:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAV O.I. C.G. H.G.
9.3 99.1 23.1 At3g03770 821164 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
9.2 99.1 54.9 At1g79270 844267 ECT8 (evolutionarily conserved C-terminal region 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
9.1 99.1 19.5 At1g03440 839504 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
9.0 99.1 61.9 At3g11670 820339 DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1) Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE). O.I. C.G. H.G.
9.0 99.1 34.3 At4g24460 828548 unknown protein F:unknown;P:unknown;C:chloroplast;OPBM O.I. C.G. H.G.
9.0 99.1 14.7 At4g04750 825811 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
8.9 99.0 80.7 At1g07280 837239 binding F:binding;P:biological_process unknown;C:chloroplast;PBOAFM O.I. C.G. H.G.
8.8 99.0 193.6 At1g73600 843694 methyltransferase/ phosphoethanolamine N-methyltransferase F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV O.I. C.G. H.G.
8.8 99.0 85.2 At5g67370 836872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
8.8 99.0 13.0 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
8.6 99.0 97.9 At5g58260 835938 - Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
40.3	99.8	17.9	At5g11590	831031	TINY2 (TINY2)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
37.6	99.7	103.8	At4g12980	826910	auxin-responsive protein, putative	F:unknown;P:multicellular organismal development;C:membrane;PMFOB	O.I.	C.G.	H.G.
35.3	99.7	174.2	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
30.0	99.7	20.4	At1g78440	844180	ATGA2OX1 (gibberellin 2-oxidase 1)	Encodes a gibberellin 2-oxidase.	O.I.	C.G.	H.G.
25.8	99.7	159.8	At2g36870	818259	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOA	O.I.	C.G.	H.G.
23.7	99.6	30.9	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
23.1	99.6	199.2	At1g10370	837576	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF	O.I.	C.G.	H.G.
22.2	99.6	43.1	At5g01790	831868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
21.2	99.6	56.9	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
20.2	99.6	46.2	At4g27820	828895	BGLU9 (BETA GLUCOSIDASE 9)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA	O.I.	C.G.	H.G.
19.2	99.6	60.8	At4g18390	827568	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
19.2	99.6	17.2	At5g41900	834195	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
19.0	99.5	119.2	At3g21560	821710	UGT84A2	Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).	O.I.	C.G.	H.G.
18.3	99.5	175.3	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.3	99.5	31.0	At2g15320	816021	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:unknown;PMOBFA	O.I.	C.G.	H.G.
18.1	99.5	68.3	At1g17050	838275	SPS2 (Solanesyl diphosphate synthase 2)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
17.2	99.5	61.9	At1g56430	842096	NAS4 (NICOTIANAMINE SYNTHASE 4)	F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO	O.I.	C.G.	H.G.
17.2	99.5	58.4	At2g35960	818169	NHL12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	O.I.	C.G.	H.G.
15.9	99.5	33.8	At4g09350	826517	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
15.3	99.4	50.1	At2g19860	816505	HXK2 (HEXOKINASE 2)	Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses.	O.I.	C.G.	H.G.
15.2	99.4	18.3	At3g58070	824976	GIS (GLABROUS INFLORESCENCE STEMS)	Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.	O.I.	C.G.	H.G.
14.8	99.4	103.9	At2g22240	816757	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
14.7	99.4	84.4	At1g52590	841691	-	F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP	O.I.	C.G.	H.G.
14.7	99.4	31.1	At3g09650	820122	HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)	RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.	O.I.	C.G.	H.G.
14.5	99.4	153.4	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
14.5	99.4	40.9	At2g44940	819103	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
14.5	99.4	36.2	At5g59350	836054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.4	99.4	63.6	At5g45820	834622	CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	O.I.	C.G.	H.G.
14.2	99.4	72.5	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
13.9	99.4	126.4	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	O.I.	C.G.	H.G.
13.8	99.4	210.6	At3g59400	825109	GUN4	GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.	O.I.	C.G.	H.G.
13.7	99.4	55.5	At4g37310	829886	CYP81H1	member of CYP81H	O.I.	C.G.	H.G.
13.6	99.4	48.9	At2g36630	818235	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA	O.I.	C.G.	H.G.
13.4	99.4	48.9	At1g18360	838417	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOPMFVA	O.I.	C.G.	H.G.
13.2	99.4	37.5	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
13.1	99.4	44.9	At5g62220	836343	exostosin family protein	F:catalytic activity;P:unknown;C:chloroplast, membrane;POM	O.I.	C.G.	H.G.
12.6	99.3	38.4	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
12.5	99.3	60.5	At1g70580	843395	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)	Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1	O.I.	C.G.	H.G.
12.5	99.3	33.7	At4g35320	829686	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.4	99.3	210.8	At4g39800	830139	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
12.4	99.3	88.6	At3g01060	821278	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP	O.I.	C.G.	H.G.
12.4	99.3	75.6	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
12.4	99.3	18.1	At5g55580	835652	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
12.2	99.3	90.8	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
12.2	99.3	35.8	At2g41040	818703	methyltransferase-related	F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM	O.I.	C.G.	H.G.
12.1	99.3	97.0	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
12.0	99.3	172.1	At5g43850	834407	ARD4	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
11.6	99.3	69.2	At5g63050	836425	EMB2759 (embryo defective 2759)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;P	O.I.	C.G.	H.G.
11.5	99.3	117.5	At1g64860	842794	SIGA (SIGMA FACTOR A)	Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme	O.I.	C.G.	H.G.
11.4	99.3	35.7	At5g54250	835513	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	O.I.	C.G.	H.G.
11.2	99.2	110.6	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
11.1	99.2	14.5	At4g35290	829682	GLUR2 (GLUTAMATE RECEPTOR 2)	Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
10.9	99.2	38.5	At3g19720	821509	ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5)	Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP�ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.	O.I.	C.G.	H.G.
10.9	99.2	19.0	At5g53200	835401	TRY (TRIPTYCHON)	F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
10.8	99.2	149.0	At3g21670	821721	nitrate transporter (NTP3)	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
10.8	99.2	102.5	At2g24420	816978	DNA repair ATPase-related	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
10.8	99.2	93.7	At5g09870	830847	CESA5 (CELLULOSE SYNTHASE 5)	Encodes a cellulose synthase isomer, related to CESA6.	O.I.	C.G.	H.G.
10.8	99.2	13.7	At5g40060	834003	ATP binding / nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:apoptosis;C:unknown	O.I.	C.G.	H.G.
10.7	99.2	151.3	At2g40100	818599	LHCB4.3 (light harvesting complex PSII)	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II	O.I.	C.G.	H.G.
10.6	99.2	237.9	At4g26850	828792	VTC2 (vitamin c defective 2)	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	O.I.	C.G.	H.G.
10.6	99.2	46.7	At1g29700	839847	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF	O.I.	C.G.	H.G.
10.5	99.2	189.7	At5g48490	834905	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
10.5	99.2	44.2	At1g21590	838760	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
10.2	99.2	44.1	At3g14720	820700	ATMPK19	member of MAP Kinase	O.I.	C.G.	H.G.
10.2	99.2	14.5	At5g17600	831626	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
10.2	99.2	13.5	At4g35270	829680	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:unknown;POMFBV	O.I.	C.G.	H.G.
10.0	99.2	168.7	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
10.0	99.2	23.7	At3g56080	824774	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
9.9	99.1	85.6	At4g03050	828104	AOP3	Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
9.8	99.1	147.9	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.
9.8	99.1	52.8	At5g64170	836538	dentin sialophosphoprotein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMA	O.I.	C.G.	H.G.
9.7	99.1	72.0	At1g04530	839500	binding	F:binding;P:unknown;C:unknown;PBOMAF	O.I.	C.G.	H.G.
9.7	99.1	12.0	At3g17640	821031	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:unknown;PMOBFA	O.I.	C.G.	H.G.
9.6	99.1	42.7	At3g02830	821230	ZFN1 (ZINC FINGER PROTEIN 1)	Encodes a zinc finger protein.	O.I.	C.G.	H.G.
9.6	99.1	12.9	At2g29090	817457	CYP707A2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	O.I.	C.G.	H.G.
9.3	99.1	64.4	At2g36145	818187	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	C.G.	H.G.
9.3	99.1	34.7	At5g14880	831340	potassium transporter, putative	F:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAV	O.I.	C.G.	H.G.
9.3	99.1	23.1	At3g03770	821164	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
9.2	99.1	54.9	At1g79270	844267	ECT8 (evolutionarily conserved C-terminal region 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
9.1	99.1	19.5	At1g03440	839504	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
9.0	99.1	61.9	At3g11670	820339	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).	O.I.	C.G.	H.G.
9.0	99.1	34.3	At4g24460	828548	unknown protein	F:unknown;P:unknown;C:chloroplast;OPBM	O.I.	C.G.	H.G.
9.0	99.1	14.7	At4g04750	825811	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
8.9	99.0	80.7	At1g07280	837239	binding	F:binding;P:biological_process unknown;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
8.8	99.0	193.6	At1g73600	843694	methyltransferase/ phosphoethanolamine N-methyltransferase	F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV	O.I.	C.G.	H.G.
8.8	99.0	85.2	At5g67370	836872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
8.8	99.0	13.0	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.6	99.0	97.9	At5g58260	835938	-	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM38669
Assay name	NSPS
GSE experiment	GSE2268: Arabidopsis polysome microarray

Microarray experiments to specifically-expressed genes

GSM ID GSM38669 Assay name NSPS GSE experiment GSE2268: Arabidopsis polysome microarray

GSM ID GSM38669

Assay name NSPS

GSE experiment GSE2268: Arabidopsis polysome microarray