Microarray experiments to specifically-expressed genes

GSM ID GSM339547
Assay name Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -9
GSE experiment GSE13469: Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
41.999.868.7At2g44240819032unknown proteinF:unknown;P:response to oxidative stress;C:endomembrane system;PFBO.I.C.G.H.G.
33.599.7112.8At1g73540843688atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFAO.I.C.G.H.G.
32.899.7471.4At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
31.199.7520.2At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.O.I.C.G.H.G.
28.499.7127.8At3g44260823551CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOFO.I.C.G.H.G.
27.899.780.2At4g27654828878unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.899.749.7At3g486503769688-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.899.6153.9At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAO.I.C.G.H.G.
24.799.6302.5At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
24.799.6124.9At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.899.613.9At2g29110817459ATGLR2.8member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
21.899.6233.3At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVO.I.C.G.H.G.
21.399.6190.3At4g24570828559mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
21.299.683.8At1g28370839733ERF11 (ERF DOMAIN PROTEIN 11)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
21.099.629.9At1g77640844099AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
20.899.6109.5At1g74930843832ORA47encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
20.799.693.1At3g02840821225immediate-early fungal elicitor family proteinF:binding;P:response to other organism, response to ozone;C:unknown;POO.I.C.G.H.G.
20.499.665.7At5g47070834753protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
20.199.647.8At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
18.799.564.1At1g35230840412AGP5 (ARABINOGALACTAN-PROTEIN 5)Encodes arabinogalactan-protein (AGP5).O.I.C.G.H.G.
18.699.583.9At5g22250832285CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOFO.I.C.G.H.G.
18.299.588.2At2g05940815147protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
17.899.5144.8At4g34410829591RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
17.599.540.0At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.399.5104.6At1g74450843786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.399.564.0At3g28340822462GATL10 (Galacturonosyltransferase-like 10)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
16.499.5532.9At2g14610815949PR1 (PATHOGENESIS-RELATED GENE 1)PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.O.I.C.G.H.G.
15.799.5169.3At3g46620823815zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVBO.I.C.G.H.G.
15.799.527.2At5g58120835924disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
15.399.417.3At5g47850834836CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
13.499.471.4At2g050503767735catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
13.499.469.1At2g34600818025JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
13.199.4259.8At1g27730839666STZ (salt tolerance zinc finger)Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress.O.I.C.G.H.G.
13.099.449.8At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
12.899.3143.0At1g77510844087ATPDIL1-2 (PDI-LIKE 1-2)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.O.I.C.G.H.G.
12.699.380.0At1g76960844031unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.699.342.8At4g33920829536protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBVO.I.C.G.H.G.
12.699.36.4At1g33950840292avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:unknown;MOPBFVO.I.C.G.H.G.
12.599.342.1At1g66090842923disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMFO.I.C.G.H.G.
12.299.3174.5At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFO.I.C.G.H.G.
12.299.384.3At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
11.599.389.2At3g61190825291BAP1 (BON ASSOCIATION PROTEIN 1)Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.O.I.C.G.H.G.
11.599.337.7At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAO.I.C.G.H.G.
11.499.3130.0At3g55980824764SZF1 (SALT-INDUCIBLE ZINC FINGER 1)F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAVO.I.C.G.H.G.
11.499.351.1At5g52050835280MATE efflux protein-relatedF:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
11.499.324.0At4g27657828879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.999.226.1At4g16890827397SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1)Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.O.I.C.G.H.G.
10.999.212.4At5g58680835982armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
10.599.263.2At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
10.499.2173.0At2g22500816783UCP5 (UNCOUPLING PROTEIN 5)F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
10.199.2155.3At2g18690816384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
9.899.123.7At2g15390816031FUT4Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.O.I.C.G.H.G.
9.699.1102.5At1g52890841722ANAC019 (Arabidopsis NAC domain containing protein 19)encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.O.I.C.G.H.G.
9.699.188.1At5g04340830313ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)putative c2h2 zinc finger transcription factor mRNA,O.I.C.G.H.G.
9.599.174.5At2g46400819248WRKY46member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
9.599.127.0At4g23220828421kinaseF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
9.499.195.8At5g59550836074zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVBO.I.C.G.H.G.
9.499.193.5At1g18740838456unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PAO.I.C.G.H.G.
9.499.124.4At4g39830830142L-ascorbate oxidase, putativeF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOAO.I.C.G.H.G.
9.399.144.4At5g62570836377calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.399.130.4At1g24140839026matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAFO.I.C.G.H.G.
9.399.120.3At1g12610837817DDF1 (DWARF AND DELAYED FLOWERING 1)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.O.I.C.G.H.G.
9.299.1131.7At1g08450837365CRT3 (CALRETICULIN 3)Encodes calreticulin CRT3.O.I.C.G.H.G.
9.299.178.4At5g18470831965curculin-like (mannose-binding) lectin family proteinF:sugar binding;P:biological_process unknown;C:plant-type cell wall;PO.I.C.G.H.G.
9.199.135.9At3g28540822484AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAVO.I.C.G.H.G.
9.199.120.2At1g67470843068protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
9.099.1306.8At1g09070837428SRC2 (SOYBEAN GENE REGULATED BY COLD-2)SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.O.I.C.G.H.G.
9.099.165.8At3g01830820033calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
8.899.082.5At1g27100839599-F:molecular_function unknown;P:biological_process unknown;C:vacuole;PFOMBO.I.C.G.H.G.
8.899.071.2At1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOO.I.C.G.H.G.
8.899.017.7At1g32960840190SBT3.3F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFMO.I.C.G.H.G.
8.899.06.5At3g24900822088AtRLP39 (Receptor Like Protein 39)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage