CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM339543

Assay name Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5

GSE experiment GSE13469: Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
70.5 99.9 55.7 At1g12610 837817 DDF1 (DWARF AND DELAYED FLOWERING 1) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor. O.I. C.G. H.G.
69.6 99.9 23.9 At1g09950 837529 transcription factor-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
64.7 99.8 275.8 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
63.8 99.8 155.7 At1g73540 843688 atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA O.I. C.G. H.G.
58.3 99.8 52.4 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
56.7 99.8 218.2 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.3 99.8 114.1 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
52.2 99.8 136.1 At2g34600 818025 JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
51.4 99.8 130.6 At1g28370 839733 ERF11 (ERF DOMAIN PROTEIN 11) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
50.2 99.8 63.2 At3g16860 820941 COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
45.7 99.8 260.4 At3g55980 824764 SZF1 (SALT-INDUCIBLE ZINC FINGER 1) F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV O.I. C.G. H.G.
45.1 99.8 276.9 At4g24570 828559 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
43.4 99.8 55.1 At5g64870 836610 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA O.I. C.G. H.G.
42.8 99.8 157.1 At3g44260 823551 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF O.I. C.G. H.G.
40.4 99.8 70.5 At5g41740 834177 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA O.I. C.G. H.G.
36.1 99.7 50.7 At5g17350 831601 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
34.3 99.7 147.5 At1g74450 843786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
33.5 99.7 84.4 At5g62570 836377 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.4 99.7 280.4 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF O.I. C.G. H.G.
31.3 99.7 123.0 At1g17380 838310 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
28.8 99.7 104.4 At5g22250 832285 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF O.I. C.G. H.G.
28.8 99.7 81.3 At5g52050 835280 MATE efflux protein-related F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
28.4 99.7 77.4 At5g47070 834753 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
28.3 99.7 212.5 At1g61890 842485 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
28.3 99.7 34.4 At1g05300 837029 ZIP5 member of Fe(II) transporter isolog family O.I. C.G. H.G.
28.2 99.7 34.7 At1g77640 844099 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
27.7 99.7 160.7 At1g18740 838456 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PA O.I. C.G. H.G.
27.2 99.7 267.7 At2g06050 815160 OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. O.I. C.G. H.G.
25.9 99.7 121.8 At1g72520 843584 lipoxygenase, putative F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO O.I. C.G. H.G.
25.3 99.6 49.6 At1g78280 844163 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:cell surface receptor linked signal transduction;C:cellular_component unknown;MBOFP O.I. C.G. H.G.
25.1 99.6 359.8 At1g27730 839666 STZ (salt tolerance zinc finger) Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress. O.I. C.G. H.G.
24.7 99.6 36.4 At1g11960 837748 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOB O.I. C.G. H.G.
24.6 99.6 123.3 At1g15010 838066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
24.5 99.6 100.9 At3g19580 821495 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2) Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
24.4 99.6 104.5 At2g27500 817295 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFO O.I. C.G. H.G.
24.3 99.6 111.8 At1g17420 838314 LOX3 Lipoxygenase O.I. C.G. H.G.
23.8 99.6 240.0 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. C.G. H.G.
23.7 99.6 498.7 At1g09070 837428 SRC2 (SOYBEAN GENE REGULATED BY COLD-2) SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting. O.I. C.G. H.G.
23.7 99.6 23.3 At5g63770 836497 ATDGK2 (Diacylglycerol kinase 2) a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold. O.I. C.G. H.G.
23.2 99.6 59.7 At2g25250 817063 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
23.1 99.6 90.7 At4g17230 827435 SCL13 (Scarecrow-like 13) Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. O.I. C.G. H.G.
22.2 99.6 176.1 At1g35140 840399 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds O.I. C.G. H.G.
21.8 99.6 96.2 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
21.8 99.6 91.2 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
21.7 99.6 125.0 At3g15210 820752 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. O.I. C.G. H.G.
21.5 99.6 80.3 At1g22570 838863 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
21.4 99.6 116.4 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
20.6 99.6 110.2 At2g35930 818166 PUB23 (PLANT U-BOX 23) Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. O.I. C.G. H.G.
20.5 99.6 140.1 At3g04640 819622 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA O.I. C.G. H.G.
20.5 99.6 78.4 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF O.I. C.G. H.G.
20.4 99.6 133.1 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
19.1 99.6 76.3 At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. O.I. C.G. H.G.
19.0 99.5 93.5 At2g44500 819057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
18.7 99.5 84.2 At4g23810 828481 WRKY53 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
18.7 99.5 17.7 At1g24330 839049 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:chloroplast;PMOFBV O.I. C.G. H.G.
18.4 99.5 137.2 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.
18.3 99.5 114.3 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
18.1 99.5 75.5 At1g30135 839893 JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.1 99.5 40.1 At3g48650 3769688 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
18.0 99.5 64.2 At5g50570 835126 squamosa promoter-binding protein, putative F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
18.0 99.5 38.4 At3g27540 822376 glycosyl transferase family 17 protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMBFV O.I. C.G. H.G.
17.9 99.5 214.7 At3g55430 824709 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOB O.I. C.G. H.G.
17.8 99.5 49.8 At5g24590 832530 - - O.I. C.G. H.G.
17.7 99.5 131.3 At5g59550 836074 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. C.G. H.G.
17.7 99.5 28.1 At1g67470 843068 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
17.6 99.5 50.0 At1g66090 842923 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMF O.I. C.G. H.G.
17.6 99.5 18.2 At5g16200 831478 50S ribosomal protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.3 99.5 61.1 At1g66160 842931 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV O.I. C.G. H.G.
17.2 99.5 196.2 At3g52800 824446 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:response to chitin;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
17.0 99.5 85.8 At3g57530 824920 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro O.I. C.G. H.G.
16.9 99.5 48.7 At5g10750 830942 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
16.7 99.5 219.3 At2g22500 816783 UCP5 (UNCOUPLING PROTEIN 5) F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
16.7 99.5 79.1 At3g49530 824115 anac062 (Arabidopsis NAC domain containing protein 62) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
16.4 99.5 71.7 At3g54810 824646 zinc finger (GATA type) family protein Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. O.I. C.G. H.G.
16.1 99.5 220.5 At2g17840 816293 ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. O.I. C.G. H.G.
16.0 99.5 28.7 At2g27310 817274 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.8 99.5 95.3 At1g74930 843832 ORA47 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
15.7 99.5 34.8 At4g22780 828377 ACR7 Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding . O.I. C.G. H.G.
15.5 99.5 85.8 At5g45340 834570 CYP707A3 Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor). O.I. C.G. H.G.
15.4 99.5 67.6 At1g69890 843325 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.1 99.4 60.6 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
15.0 99.4 75.1 At2g26190 817159 calmodulin-binding family protein F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB O.I. C.G. H.G.
14.9 99.4 131.2 At3g47960 823951 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO O.I. C.G. H.G.
14.9 99.4 107.3 At1g27100 839599 - F:molecular_function unknown;P:biological_process unknown;C:vacuole;PFOMB O.I. C.G. H.G.
14.8 99.4 195.4 At2g40000 818588 HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
14.4 99.4 102.7 At1g32640 840158 MYC2 Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light�mediated photomorphogenic growth and blue and far-red-light�regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. O.I. C.G. H.G.
14.2 99.4 128.7 At2g26530 817194 AR781 unknown function O.I. C.G. H.G.
14.2 99.4 75.9 At2g24600 816996 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
14.1 99.4 127.0 At5g11070 830974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.0 99.4 127.1 At4g11280 826730 ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family O.I. C.G. H.G.
13.8 99.4 112.2 At3g59350 825104 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
13.8 99.4 37.1 At1g24140 839026 matrixin family protein F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAF O.I. C.G. H.G.
13.6 99.4 157.6 At3g46620 823815 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. C.G. H.G.
13.6 99.4 94.5 At1g29340 839808 PUB17 (PLANT U-BOX 17) Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato. O.I. C.G. H.G.
13.6 99.4 79.5 At2g36220 818194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.6 99.4 65.9 At1g02400 839508 GA2OX6 (GIBBERELLIN 2-OXIDASE 6) Encodes a gibberellin 2-oxidase. O.I. C.G. H.G.
13.6 99.4 44.3 At4g33920 829536 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBV O.I. C.G. H.G.
13.4 99.4 45.1 At1g78070 844142 - F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFO O.I. C.G. H.G.
13.4 99.4 3.3 At1g63030 842606 ddf2 (DWARF AND DELAYED FLOWERING 2) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels. O.I. C.G. H.G.
13.2 99.4 61.2 At5g62520 836372 SRO5 (SIMILAR TO RCD ONE 5) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
70.5	99.9	55.7	At1g12610	837817	DDF1 (DWARF AND DELAYED FLOWERING 1)	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.	O.I.	C.G.	H.G.
69.6	99.9	23.9	At1g09950	837529	transcription factor-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
64.7	99.8	275.8	At4g34410	829591	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
63.8	99.8	155.7	At1g73540	843688	atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA	O.I.	C.G.	H.G.
58.3	99.8	52.4	At5g58120	835924	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
56.7	99.8	218.2	At2g27080	817250	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.3	99.8	114.1	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
52.2	99.8	136.1	At2g34600	818025	JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)	F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
51.4	99.8	130.6	At1g28370	839733	ERF11 (ERF DOMAIN PROTEIN 11)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
50.2	99.8	63.2	At3g16860	820941	COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
45.7	99.8	260.4	At3g55980	824764	SZF1 (SALT-INDUCIBLE ZINC FINGER 1)	F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV	O.I.	C.G.	H.G.
45.1	99.8	276.9	At4g24570	828559	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
43.4	99.8	55.1	At5g64870	836610	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA	O.I.	C.G.	H.G.
42.8	99.8	157.1	At3g44260	823551	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF	O.I.	C.G.	H.G.
40.4	99.8	70.5	At5g41740	834177	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA	O.I.	C.G.	H.G.
36.1	99.7	50.7	At5g17350	831601	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.3	99.7	147.5	At1g74450	843786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
33.5	99.7	84.4	At5g62570	836377	calmodulin-binding protein	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.4	99.7	280.4	At4g29780	829100	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MPF	O.I.	C.G.	H.G.
31.3	99.7	123.0	At1g17380	838310	JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.8	99.7	104.4	At5g22250	832285	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF	O.I.	C.G.	H.G.
28.8	99.7	81.3	At5g52050	835280	MATE efflux protein-related	F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
28.4	99.7	77.4	At5g47070	834753	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
28.3	99.7	212.5	At1g61890	842485	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
28.3	99.7	34.4	At1g05300	837029	ZIP5	member of Fe(II) transporter isolog family	O.I.	C.G.	H.G.
28.2	99.7	34.7	At1g77640	844099	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
27.7	99.7	160.7	At1g18740	838456	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PA	O.I.	C.G.	H.G.
27.2	99.7	267.7	At2g06050	815160	OPR3 (OPDA-REDUCTASE 3)	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.	O.I.	C.G.	H.G.
25.9	99.7	121.8	At1g72520	843584	lipoxygenase, putative	F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO	O.I.	C.G.	H.G.
25.3	99.6	49.6	At1g78280	844163	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:cell surface receptor linked signal transduction;C:cellular_component unknown;MBOFP	O.I.	C.G.	H.G.
25.1	99.6	359.8	At1g27730	839666	STZ (salt tolerance zinc finger)	Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress.	O.I.	C.G.	H.G.
24.7	99.6	36.4	At1g11960	837748	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOB	O.I.	C.G.	H.G.
24.6	99.6	123.3	At1g15010	838066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
24.5	99.6	100.9	At3g19580	821495	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
24.4	99.6	104.5	At2g27500	817295	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFO	O.I.	C.G.	H.G.
24.3	99.6	111.8	At1g17420	838314	LOX3	Lipoxygenase	O.I.	C.G.	H.G.
23.8	99.6	240.0	At1g80840	844423	WRKY40	Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	C.G.	H.G.
23.7	99.6	498.7	At1g09070	837428	SRC2 (SOYBEAN GENE REGULATED BY COLD-2)	SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.	O.I.	C.G.	H.G.
23.7	99.6	23.3	At5g63770	836497	ATDGK2 (Diacylglycerol kinase 2)	a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.	O.I.	C.G.	H.G.
23.2	99.6	59.7	At2g25250	817063	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
23.1	99.6	90.7	At4g17230	827435	SCL13 (Scarecrow-like 13)	Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.	O.I.	C.G.	H.G.
22.2	99.6	176.1	At1g35140	840399	PHI-1 (PHOSPHATE-INDUCED 1)	At1g35140 (At1g35140/T32G9_32) mRNA, complete cds	O.I.	C.G.	H.G.
21.8	99.6	96.2	At2g42760	818876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
21.8	99.6	91.2	At2g05050	3767735	catalytic	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
21.7	99.6	125.0	At3g15210	820752	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.	O.I.	C.G.	H.G.
21.5	99.6	80.3	At1g22570	838863	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
21.4	99.6	116.4	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
20.6	99.6	110.2	At2g35930	818166	PUB23 (PLANT U-BOX 23)	Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.	O.I.	C.G.	H.G.
20.5	99.6	140.1	At3g04640	819622	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA	O.I.	C.G.	H.G.
20.5	99.6	78.4	At2g41640	818762	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
20.4	99.6	133.1	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
19.1	99.6	76.3	At4g35480	829700	RHA3B	Encodes a putative RING-H2 finger protein RHA3b.	O.I.	C.G.	H.G.
19.0	99.5	93.5	At2g44500	819057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
18.7	99.5	84.2	At4g23810	828481	WRKY53	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
18.7	99.5	17.7	At1g24330	839049	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:chloroplast;PMOFBV	O.I.	C.G.	H.G.
18.4	99.5	137.2	At4g23180	828417	CRK10 (CYSTEINE-RICH RLK10)	Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.
18.3	99.5	114.3	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
18.1	99.5	75.5	At1g30135	839893	JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.1	99.5	40.1	At3g48650	3769688	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
18.0	99.5	64.2	At5g50570	835126	squamosa promoter-binding protein, putative	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
18.0	99.5	38.4	At3g27540	822376	glycosyl transferase family 17 protein	F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMBFV	O.I.	C.G.	H.G.
17.9	99.5	214.7	At3g55430	824709	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOB	O.I.	C.G.	H.G.
17.8	99.5	49.8	At5g24590	832530	-	-	O.I.	C.G.	H.G.
17.7	99.5	131.3	At5g59550	836074	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB	O.I.	C.G.	H.G.
17.7	99.5	28.1	At1g67470	843068	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
17.6	99.5	50.0	At1g66090	842923	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMF	O.I.	C.G.	H.G.
17.6	99.5	18.2	At5g16200	831478	50S ribosomal protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.3	99.5	61.1	At1g66160	842931	U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV	O.I.	C.G.	H.G.
17.2	99.5	196.2	At3g52800	824446	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:response to chitin;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
17.0	99.5	85.8	At3g57530	824920	CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)	Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro	O.I.	C.G.	H.G.
16.9	99.5	48.7	At5g10750	830942	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
16.7	99.5	219.3	At2g22500	816783	UCP5 (UNCOUPLING PROTEIN 5)	F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
16.7	99.5	79.1	At3g49530	824115	anac062 (Arabidopsis NAC domain containing protein 62)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.4	99.5	71.7	At3g54810	824646	zinc finger (GATA type) family protein	Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.	O.I.	C.G.	H.G.
16.1	99.5	220.5	At2g17840	816293	ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)	Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.	O.I.	C.G.	H.G.
16.0	99.5	28.7	At2g27310	817274	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.8	99.5	95.3	At1g74930	843832	ORA47	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
15.7	99.5	34.8	At4g22780	828377	ACR7	Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .	O.I.	C.G.	H.G.
15.5	99.5	85.8	At5g45340	834570	CYP707A3	Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).	O.I.	C.G.	H.G.
15.4	99.5	67.6	At1g69890	843325	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.1	99.4	60.6	At5g66210	836753	CPK28	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
15.0	99.4	75.1	At2g26190	817159	calmodulin-binding family protein	F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB	O.I.	C.G.	H.G.
14.9	99.4	131.2	At3g47960	823951	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO	O.I.	C.G.	H.G.
14.9	99.4	107.3	At1g27100	839599	-	F:molecular_function unknown;P:biological_process unknown;C:vacuole;PFOMB	O.I.	C.G.	H.G.
14.8	99.4	195.4	At2g40000	818588	HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)	F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
14.4	99.4	102.7	At1g32640	840158	MYC2	Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light�mediated photomorphogenic growth and blue and far-red-light�regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression.	O.I.	C.G.	H.G.
14.2	99.4	128.7	At2g26530	817194	AR781	unknown function	O.I.	C.G.	H.G.
14.2	99.4	75.9	At2g24600	816996	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
14.1	99.4	127.0	At5g11070	830974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.0	99.4	127.1	At4g11280	826730	ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6)	encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family	O.I.	C.G.	H.G.
13.8	99.4	112.2	At3g59350	825104	serine/threonine protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
13.8	99.4	37.1	At1g24140	839026	matrixin family protein	F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAF	O.I.	C.G.	H.G.
13.6	99.4	157.6	At3g46620	823815	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB	O.I.	C.G.	H.G.
13.6	99.4	94.5	At1g29340	839808	PUB17 (PLANT U-BOX 17)	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.	O.I.	C.G.	H.G.
13.6	99.4	79.5	At2g36220	818194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.6	99.4	65.9	At1g02400	839508	GA2OX6 (GIBBERELLIN 2-OXIDASE 6)	Encodes a gibberellin 2-oxidase.	O.I.	C.G.	H.G.
13.6	99.4	44.3	At4g33920	829536	protein phosphatase 2C family protein / PP2C family protein	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBV	O.I.	C.G.	H.G.
13.4	99.4	45.1	At1g78070	844142	-	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFO	O.I.	C.G.	H.G.
13.4	99.4	3.3	At1g63030	842606	ddf2 (DWARF AND DELAYED FLOWERING 2)	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.	O.I.	C.G.	H.G.
13.2	99.4	61.2	At5g62520	836372	SRO5 (SIMILAR TO RCD ONE 5)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	O.I.	C.G.	H.G.

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GSM ID	GSM339543
Assay name	Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5
GSE experiment	GSE13469: Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM339543 Assay name Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5 GSE experiment GSE13469: Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis

GSM ID GSM339543

Assay name Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5

GSE experiment GSE13469: Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis