Microarray experiments to specifically-expressed genes

GSM ID GSM339541
Assay name Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -3
GSE experiment GSE13469: Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
41.799.8117.6At1g28370839733ERF11 (ERF DOMAIN PROTEIN 11)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
33.799.716.7At1g09950837529transcription factor-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.299.7140.5At1g74450843786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
29.599.737.3At5g58120835924disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
28.499.7154.4At2g27080817250harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.999.7196.1At3g55980824764SZF1 (SALT-INDUCIBLE ZINC FINGER 1)F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAVO.I.C.G.H.G.
25.199.6171.9At4g34410829591RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
24.199.674.4At5g50570835126squamosa promoter-binding protein, putativeF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
23.999.6131.0At3g15210820752ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.O.I.C.G.H.G.
23.999.631.6At1g05300837029ZIP5member of Fe(II) transporter isolog familyO.I.C.G.H.G.
23.599.6106.5At1g17380838310JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.691.3At3g49530824115anac062 (Arabidopsis NAC domain containing protein 62)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.639.4At5g64870836610-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAO.I.C.G.H.G.
21.799.630.5At1g77640844099AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
21.699.687.6At2g34600818025JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
20.999.640.8At3g16860820941COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
20.899.633.4At1g11960837748-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOBO.I.C.G.H.G.
20.099.665.0At5g47070834753protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
19.299.629.1At1g12610837817DDF1 (DWARF AND DELAYED FLOWERING 1)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.O.I.C.G.H.G.
18.699.563.0At5g62570836377calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.599.542.3At1g78280844163transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:cell surface receptor linked signal transduction;C:cellular_component unknown;MBOFPO.I.C.G.H.G.
18.299.5159.5At1g35140840399PHI-1 (PHOSPHATE-INDUCED 1)At1g35140 (At1g35140/T32G9_32) mRNA, complete cdsO.I.C.G.H.G.
18.199.564.7At4g27654828878unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.199.550.7At1g66090842923disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMFO.I.C.G.H.G.
17.599.581.5At1g73540843688atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFAO.I.C.G.H.G.
17.199.5170.3At4g24570828559mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
16.999.572.3At2g17040816209anac036 (Arabidopsis NAC domain containing protein 36)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
16.399.5207.4At2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.O.I.C.G.H.G.
16.099.533.7At5g17350831601unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
14.899.472.5At4g17230827435SCL13 (Scarecrow-like 13)Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.O.I.C.G.H.G.
14.499.4115.8At1g18740838456unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PAO.I.C.G.H.G.
14.499.442.0At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAO.I.C.G.H.G.
14.399.494.1At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
14.099.489.7At1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOO.I.C.G.H.G.
14.099.454.9At1g66160842931U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
13.999.4182.3At1g19380838521unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
13.899.4381.4At1g09070837428SRC2 (SOYBEAN GENE REGULATED BY COLD-2)SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.O.I.C.G.H.G.
13.799.4148.1At1g61890842485MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
13.399.473.7At2g24600816996ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
13.199.4194.4At2g22500816783UCP5 (UNCOUPLING PROTEIN 5)F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
13.099.481.9At1g17420838314LOX3LipoxygenaseO.I.C.G.H.G.
12.999.3111.0At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAO.I.C.G.H.G.
12.499.318.1At5g22690832332disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOAFO.I.C.G.H.G.
12.399.359.2At5g62520836372SRO5 (SIMILAR TO RCD ONE 5)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.O.I.C.G.H.G.
12.199.383.6At3g44260823551CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOFO.I.C.G.H.G.
11.899.372.8At2g27500817295glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFOO.I.C.G.H.G.
11.799.3170.9At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFO.I.C.G.H.G.
11.399.38.0At1g61610842457S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.199.292.8At1g27100839599-F:molecular_function unknown;P:biological_process unknown;C:vacuole;PFOMBO.I.C.G.H.G.
11.199.231.3At2g46510819262ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.O.I.C.G.H.G.
11.199.213.7At1g24330839049armadillo/beta-catenin repeat family protein / U-box domain-containing family proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:chloroplast;PMOFBVO.I.C.G.H.G.
10.999.250.1At5g52050835280MATE efflux protein-relatedF:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
10.799.221.9At1g67470843068protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
10.499.297.3At3g59350825104serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
10.499.266.9At3g57530824920CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitroO.I.C.G.H.G.
10.499.238.1At5g24590832530--O.I.C.G.H.G.
10.499.226.5At1g75230843860HhH-GPD base excision DNA repair family proteinF:catalytic activity;P:DNA repair, base-excision repair;C:nucleus;OBFPAMO.I.C.G.H.G.
10.399.2102.5At4g23180828417CRK10 (CYSTEINE-RICH RLK10)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
10.199.238.2At4g33920829536protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBVO.I.C.G.H.G.
10.199.213.8At5g1620083147850S ribosomal protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.099.239.3At1g59910842285formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVAO.I.C.G.H.G.
9.899.161.0At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
9.799.1158.2At3g55430824709glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOBO.I.C.G.H.G.
9.799.184.0At3g62720825446XT1 (XYLOSYLTRANSFERASE 1)Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.O.I.C.G.H.G.
9.699.163.8At2g42760818876unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
9.599.148.0At5g66210836753CPK28member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
9.399.185.6At1g27770839670ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.O.I.C.G.H.G.
9.299.1340.5At5g57560835860TCH4 (Touch 4)Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuliO.I.C.G.H.G.
9.299.158.9At5g22250832285CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOFO.I.C.G.H.G.
9.199.140.1At3g27210822340unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBFO.I.C.G.H.G.
9.199.126.4At4g22780828377ACR7Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .O.I.C.G.H.G.
8.899.014.2At5g63770836497ATDGK2 (Diacylglycerol kinase 2)a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage