Microarray experiments to specifically-expressed genes

GSM ID GSM318625
Assay name Apex_octa_18DAS_2
GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
71.399.956.5At5g64110836532peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOBO.I.C.G.H.G.
54.399.8260.7At5g36910833659THI2.2 (THIONIN 2.2)Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
47.299.819.2At5g60780836199ATNRT2.3member of High affinity nitrate transporter familyO.I.C.G.H.G.
42.499.819.1At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFO.I.C.G.H.G.
41.099.844.6At4g38960830051zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
39.499.856.1At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
36.299.7164.0At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
35.899.719.7At1g31310840019hydroxyproline-rich glycoprotein family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVAO.I.C.G.H.G.
32.699.722.9At1g49730841396protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
32.499.735.6At2g29890817539VLN1 (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.O.I.C.G.H.G.
32.499.716.3At1g11300837672ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
31.999.725.9At3g63300825505phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;OMPBFO.I.C.G.H.G.
30.799.742.9At1g11600837704CYP77B1member of CYP77BO.I.C.G.H.G.
27.399.713.9At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
27.199.722.5At1g72410843573COP1-interacting protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVAO.I.C.G.H.G.
26.699.735.8At3g55020824668RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVAO.I.C.G.H.G.
26.599.735.0At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.499.745.9At3g18960821429transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
26.099.712.4At1g50970841519membrane trafficking VPS53 family proteinF:transporter activity;P:transport;C:endomembrane system;MFOPBAO.I.C.G.H.G.
25.899.717.9At1g66730842991ATP dependent DNA ligase family proteinF:DNA binding, DNA ligase (ATP) activity, ATP binding;P:DNA repair, DNA replication, DNA recombination;C:chloroplast;BOMFAVPO.I.C.G.H.G.
23.899.631.7At3g26932822310DRB3 (dsRNA-binding protein 3)F:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular;BPMOVO.I.C.G.H.G.
22.699.640.5At2g35920818165helicase domain-containing proteinF:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVO.I.C.G.H.G.
22.499.646.0At4g33000829437CBL10 (CALCINEURIN B-LIKE 10)Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.O.I.C.G.H.G.
22.499.627.5At5g07180830609ERL2 (ERECTA-LIKE 2)Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.O.I.C.G.H.G.
22.499.612.5At3g25670822155leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
22.099.631.4At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
21.899.6127.2At4g38660830022thaumatin, putativeF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOVO.I.C.G.H.G.
21.899.633.8At5g07690830662ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)Encodes a putative transcription factor (MYB29).O.I.C.G.H.G.
21.699.628.2At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusO.I.C.G.H.G.
21.599.644.9At4g00180827914YAB3 (YABBY3)YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.O.I.C.G.H.G.
21.399.657.4At3g11600820333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
21.199.6199.2At1g01060839341LHY (LATE ELONGATED HYPOCOTYL)LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1O.I.C.G.H.G. proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
20.999.671.8At2g45190819127AFO (ABNORMAL FLORAL ORGANS)Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).O.I.C.G.H.G.
20.599.613.2At4g03205828029coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putativeF:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMPO.I.C.G.H.G.
20.499.616.6At1g55200841963protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
20.499.66.9At1g75430843879BLH11 (BEL1-LIKE HOMEODOMAIN 11)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
20.199.662.8At4g34160829564CYCD3encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.O.I.C.G.H.G.
19.599.694.3At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.C.G.H.G.
19.499.664.8At4g15620827239integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.499.658.8At1g66760842994MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMAO.I.C.G.H.G.
19.199.613.9At3g02500821065unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.899.514.6At2g31150817671ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanismF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVAO.I.C.G.H.G.
18.499.5129.9At5g67260836861CYCD3Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.O.I.C.G.H.G.
18.499.536.5At4g32980829435ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.O.I.C.G.H.G.
18.499.532.4At1g05230839256HDG2 (HOMEODOMAIN GLABROUS 2)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
18.499.59.0At1g68480843177JAG (JAGGED)Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development.O.I.C.G.H.G.
18.299.550.4At4g04850825822KEA3member of Putative potassium transporter familyO.I.C.G.H.G.
18.099.523.8At4g327103770575ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
17.799.5100.5At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
17.599.544.4At2g34710818036PHB (PHABULOSA)Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.O.I.C.G.H.G.
17.599.510.6At5g24750832544-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFPOVMO.I.C.G.H.G.
17.299.577.9At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.O.I.C.G.H.G.
17.299.524.5At5g41070834109DRB5 (DSRNA-BINDING PROTEIN 5)Encodes a double-stranded RNA binding protein.O.I.C.G.H.G.
16.999.518.6At3g10010820162DML2 (DEMETER-LIKE 2)Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.O.I.C.G.H.G.
16.799.5214.2At4g22490828344protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
16.499.554.9At1g356123766952transposable element genepseudogene of Ulp1 protease family proteinO.I.C.G.H.G.
16.399.527.6At2g36400818213AtGRF3 (GROWTH-REGULATING FACTOR 3)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower.O.I.C.G.H.G.
16.299.526.7At5g22700832333F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
16.199.593.2At3g61310825303DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
16.099.5139.7At5g54510835539DFL1 (DWARF IN LIGHT 1)Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).O.I.C.G.H.G.
16.099.581.6At5g28640832968AN3 (ANGUSTIFOLIA 3)Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.O.I.C.G.H.G.
15.599.526.8At2g36810818253bindingF:binding;P:biological_process unknown;C:chloroplast;MPOO.I.C.G.H.G.
15.399.498.3At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsO.I.C.G.H.G.
15.399.432.5At3g57470824914peptidase M16 family protein / insulinase family proteinF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
15.399.429.3At4g14720827125PPD2PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth.O.I.C.G.H.G.
15.399.48.3At5g56490835750FAD-binding domain-containing proteinF:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BOFPMAO.I.C.G.H.G.
15.299.482.8At5g23940832459EMB3009 (embryo defective 3009)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBOO.I.C.G.H.G.
15.299.425.6At5g27360832795SFP2Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.O.I.C.G.H.G.
15.299.423.6At3g13000820486transcription factorF:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMFO.I.C.G.H.G.
15.199.4139.8At2g26330817173ER (ERECTA)Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.O.I.C.G.H.G.
15.199.441.9At1g19680838555protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;OPMBFO.I.C.G.H.G.
15.099.4126.6At3g02110821207scpl25 (serine carboxypeptidase-like 25)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
14.799.4102.8At4g37550829910formamidase, putative / formamide amidohydrolase, putativeF:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAPO.I.C.G.H.G.
14.799.415.9At1g79420844280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.699.444.8At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
14.599.430.8At2g45850819193DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:nucleus;PMFOBO.I.C.G.H.G.
14.499.483.3At4g21750828263ATML1 (MERISTEM LAYER 1)Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.O.I.C.G.H.G.
14.499.456.1At3g55130824679ATWBC19 (White-Brown Complex homolog 19)Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.O.I.C.G.H.G.
14.499.419.3At3g46490823802iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
14.499.417.5At5g46880834733HB-7 (HOMEOBOX-7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOBO.I.C.G.H.G.
14.399.440.8At1g60160842311potassium transporter family proteinF:potassium ion transmembrane transporter activity;P:potassium ion transport;C:chloroplast;BPOFAVO.I.C.G.H.G.
14.399.49.4At3g26920822308-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
14.199.4116.0At2g33850817954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
14.199.486.3At2g41250818724haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPFO.I.C.G.H.G.
14.199.447.4At5g24620832533thaumatin-like protein, putativeF:unknown;P:response to other organism;C:endomembrane system;MPOFBVAO.I.C.G.H.G.
14.199.432.6At5g18460831964unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
14.199.413.7At4g09160826497SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:chloroplast;MOFBPVAO.I.C.G.H.G.
14.099.417.0At4g10910826689unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.099.414.4At5g47380834785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
13.999.464.9At1g14410838003WHY1 (WHIRLY 1)Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.O.I.C.G.H.G.
13.999.418.4At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
13.899.490.3At1g66430842961pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMFO.I.C.G.H.G.
13.799.411.2At4g36270829784ATP bindingF:ATP binding;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.C.G.H.G.
13.799.48.8At5g11320831003YUC4 (YUCCA4)Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.O.I.C.G.H.G.
13.599.442.8At4g36980829852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
13.599.427.2At4g00820828002iqd17 (IQ-domain 17)F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVBO.I.C.G.H.G.
13.599.421.4At5g38140833794NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOO.I.C.G.H.G.

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