CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM318624

Assay name Apex_octa_18DAS_1

GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
73.2 99.9 57.3 At1g06100 837119 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
68.4 99.9 48.3 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
60.4 99.8 275.0 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
59.7 99.8 21.6 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family O.I. C.G. H.G.
56.6 99.8 67.2 At4g02850 828160 phenazine biosynthesis PhzC/PhzF family protein F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
48.5 99.8 18.5 At3g27920 822415 ATMYB0 (MYB DOMAIN PROTEIN 0) Encodes a Myb-like protein that is required for induction of trichome development. O.I. C.G. H.G.
44.0 99.8 19.5 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
42.0 99.8 29.7 At3g63300 825505 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF O.I. C.G. H.G.
40.2 99.8 44.1 At4g38960 830051 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
40.1 99.8 49.0 At1g11600 837704 CYP77B1 member of CYP77B O.I. C.G. H.G.
38.4 99.8 41.4 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB O.I. C.G. H.G.
37.6 99.7 17.6 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
37.0 99.7 38.1 At2g29890 817539 VLN1 (VILLIN-LIKE 1) Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization. O.I. C.G. H.G.
31.9 99.7 34.2 At4g00480 827965 myc-related transcription factor (MYC1) MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus O.I. C.G. H.G.
31.8 99.7 88.5 At2g45190 819127 AFO (ABNORMAL FLORAL ORGANS) Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS). O.I. C.G. H.G.
30.9 99.7 151.7 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
30.8 99.7 36.8 At3g57780 824947 - F:unknown;P:unknown;C:unknown;OMFBPVA O.I. C.G. H.G.
27.5 99.7 50.9 At4g00180 827914 YAB3 (YABBY3) YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. O.I. C.G. H.G.
26.1 99.7 35.5 At3g55020 824668 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA O.I. C.G. H.G.
25.8 99.7 17.8 At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. O.I. C.G. H.G.
25.4 99.6 20.2 At1g49730 841396 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
25.2 99.6 217.9 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
25.1 99.6 16.5 At1g31310 840019 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA O.I. C.G. H.G.
24.8 99.6 23.9 At3g01140 821209 MYB106 (myb domain protein 106) Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching. O.I. C.G. H.G.
24.7 99.6 10.5 At1g68480 843177 JAG (JAGGED) Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development. O.I. C.G. H.G.
24.2 99.6 24.2 At5g66940 836828 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
24.0 99.6 113.9 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
23.6 99.6 11.8 At1g50970 841519 membrane trafficking VPS53 family protein F:transporter activity;P:transport;C:endomembrane system;MFOPBA O.I. C.G. H.G.
23.1 99.6 22.1 At5g46880 834733 HB-7 (HOMEOBOX-7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOB O.I. C.G. H.G.
23.1 99.6 7.3 At1g75430 843879 BLH11 (BEL1-LIKE HOMEODOMAIN 11) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
22.9 99.6 105.1 At4g21750 828263 ATML1 (MERISTEM LAYER 1) Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. O.I. C.G. H.G.
22.7 99.6 27.6 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
22.7 99.6 18.3 At5g47380 834785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
22.1 99.6 128.1 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV O.I. C.G. H.G.
21.8 99.6 99.1 At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO O.I. C.G. H.G.
21.6 99.6 87.2 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. O.I. C.G. H.G.
21.6 99.6 19.2 At5g63920 836513 DNA topoisomerase III alpha, putative F:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;BOMPAFV O.I. C.G. H.G.
21.5 99.6 31.6 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.4 99.6 54.5 At4g04850 825822 KEA3 member of Putative potassium transporter family O.I. C.G. H.G.
21.3 99.6 19.5 At1g76630 843996 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP O.I. C.G. H.G.
21.2 99.6 31.4 At2g36810 818253 binding F:binding;P:biological_process unknown;C:chloroplast;MPO O.I. C.G. H.G.
21.1 99.6 16.2 At1g66730 842991 ATP dependent DNA ligase family protein F:DNA binding, DNA ligase (ATP) activity, ATP binding;P:DNA repair, DNA replication, DNA recombination;C:chloroplast;BOMFAVP O.I. C.G. H.G.
20.4 99.6 13.8 At1g17920 838371 HDG12 (HOMEODOMAIN GLABROUS 12) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching. O.I. C.G. H.G.
19.3 99.6 33.2 At1g05230 839256 HDG2 (HOMEODOMAIN GLABROUS 2) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
19.2 99.6 64.5 At4g15620 827239 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.1 99.6 51.1 At4g28780 828999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
18.9 99.5 13.8 At3g02500 821065 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.6 99.5 10.3 At5g11320 831003 YUC4 (YUCCA4) Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development. O.I. C.G. H.G.
18.3 99.5 41.6 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
18.1 99.5 36.2 At4g32980 829435 ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM. O.I. C.G. H.G.
18.1 99.5 27.7 At3g26932 822310 DRB3 (dsRNA-binding protein 3) F:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular;BPMOV O.I. C.G. H.G.
18.0 99.5 37.3 At4g18020 827527 APRR2 Encodes pseudo-response regulator 2 (APRR2). O.I. C.G. H.G.
18.0 99.5 30.7 At5g07690 830662 ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29) Encodes a putative transcription factor (MYB29). O.I. C.G. H.G.
17.9 99.5 23.7 At4g32710 3770575 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
17.8 99.5 89.5 At2g03090 814838 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
17.8 99.5 21.5 At3g46490 823802 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
17.7 99.5 28.8 At2g36400 818213 AtGRF3 (GROWTH-REGULATING FACTOR 3) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower. O.I. C.G. H.G.
17.6 99.5 61.9 At3g55130 824679 ATWBC19 (White-Brown Complex homolog 19) Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. O.I. C.G. H.G.
17.6 99.5 20.6 At5g67100 836845 ICU2 (INCURVATA2) Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering. O.I. C.G. H.G.
17.4 99.5 18.1 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA O.I. C.G. H.G.
17.4 99.5 14.3 At5g45780 834618 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
17.3 99.5 15.3 At1g55200 841963 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
17.2 99.5 58.0 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. O.I. C.G. H.G.
17.0 99.5 98.8 At3g56370 824804 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
16.9 99.5 12.0 At4g03205 828029 coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP O.I. C.G. H.G.
16.8 99.5 36.9 At4g09510 826535 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
16.8 99.5 17.0 At1g79420 844280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.7 99.5 43.3 At2g34710 818036 PHB (PHABULOSA) Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA. O.I. C.G. H.G.
16.7 99.5 10.1 At3g26920 822308 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
16.5 99.5 23.4 At2g21300 816669 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOPFB O.I. C.G. H.G.
16.2 99.5 87.3 At3g29030 822543 EXPA5 (EXPANSIN A5) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
16.0 99.5 46.8 At5g48360 834889 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA O.I. C.G. H.G.
16.0 99.5 7.0 At3g49950 824157 scarecrow transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:unknown;PB O.I. C.G. H.G.
15.9 99.5 95.3 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
15.9 99.5 20.7 At5g43080 834324 CYCA3 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
15.9 99.5 15.9 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
15.7 99.5 42.2 At1g12750 837831 ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA O.I. C.G. H.G.
15.7 99.5 10.4 At1g05470 837048 CVP2 (COTYLEDON VASCULAR PATTERN 2) Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays. O.I. C.G. H.G.
15.6 99.5 27.3 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. O.I. C.G. H.G.
15.6 99.5 23.3 At5g41070 834109 DRB5 (DSRNA-BINDING PROTEIN 5) Encodes a double-stranded RNA binding protein. O.I. C.G. H.G.
15.3 99.4 29.0 At4g00820 828002 iqd17 (IQ-domain 17) F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVB O.I. C.G. H.G.
15.1 99.4 25.5 At5g27360 832795 SFP2 Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence. O.I. C.G. H.G.
15.1 99.4 23.0 At3g54990 824664 SMZ (SCHLAFMUTZE) Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
15.0 99.4 33.2 At5g43020 834317 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
14.9 99.4 21.2 At3g57830 824952 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
14.9 99.4 13.0 At1g65620 842873 AS2 (ASYMMETRIC LEAVES 2) required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP. O.I. C.G. H.G.
14.7 99.4 31.5 At1g80760 844415 NIP6 Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously. O.I. C.G. H.G.
14.6 99.4 66.4 At1g14410 838003 WHY1 (WHIRLY 1) Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. O.I. C.G. H.G.
14.6 99.4 30.6 At1g34210 840320 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. O.I. C.G. H.G.
14.4 99.4 123.9 At1g47530 841162 ripening-responsive protein, putative F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport, ripening;C:plasma membrane, membrane;BOPFMA O.I. C.G. H.G.
14.4 99.4 58.2 At4g02060 828153 PRL (PROLIFERA) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin. O.I. C.G. H.G.
14.4 99.4 51.3 At4g39510 830105 CYP96A12 member of CYP96A O.I. C.G. H.G.
14.2 99.4 197.2 At4g22490 828344 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
14.2 99.4 22.8 At3g13000 820486 transcription factor F:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMF O.I. C.G. H.G.
14.2 99.4 10.2 At5g46510 834694 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA O.I. C.G. H.G.
14.1 99.4 64.0 At3g17840 821053 RLK902 Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown. O.I. C.G. H.G.
14.0 99.4 66.0 At4g32570 829392 TIFY8 (TIFY DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
14.0 99.4 20.4 At3g02890 821192 PHD finger protein-related F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
13.9 99.4 53.6 At1g69420 843274 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP O.I. C.G. H.G.
13.9 99.4 25.7 At5g45920 834632 carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
73.2	99.9	57.3	At1g06100	837119	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
68.4	99.9	48.3	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
60.4	99.8	275.0	At5g36910	833659	THI2.2 (THIONIN 2.2)	Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
59.7	99.8	21.6	At5g60780	836199	ATNRT2.3	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
56.6	99.8	67.2	At4g02850	828160	phenazine biosynthesis PhzC/PhzF family protein	F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
48.5	99.8	18.5	At3g27920	822415	ATMYB0 (MYB DOMAIN PROTEIN 0)	Encodes a Myb-like protein that is required for induction of trichome development.	O.I.	C.G.	H.G.
44.0	99.8	19.5	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
42.0	99.8	29.7	At3g63300	825505	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF	O.I.	C.G.	H.G.
40.2	99.8	44.1	At4g38960	830051	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
40.1	99.8	49.0	At1g11600	837704	CYP77B1	member of CYP77B	O.I.	C.G.	H.G.
38.4	99.8	41.4	At5g64110	836532	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB	O.I.	C.G.	H.G.
37.6	99.7	17.6	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
37.0	99.7	38.1	At2g29890	817539	VLN1 (VILLIN-LIKE 1)	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	O.I.	C.G.	H.G.
31.9	99.7	34.2	At4g00480	827965	myc-related transcription factor (MYC1)	MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	O.I.	C.G.	H.G.
31.8	99.7	88.5	At2g45190	819127	AFO (ABNORMAL FLORAL ORGANS)	Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).	O.I.	C.G.	H.G.
30.9	99.7	151.7	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
30.8	99.7	36.8	At3g57780	824947	-	F:unknown;P:unknown;C:unknown;OMFBPVA	O.I.	C.G.	H.G.
27.5	99.7	50.9	At4g00180	827914	YAB3 (YABBY3)	YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.	O.I.	C.G.	H.G.
26.1	99.7	35.5	At3g55020	824668	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
25.8	99.7	17.8	At5g53210	835402	SPCH (SPEECHLESS)	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.	O.I.	C.G.	H.G.
25.4	99.6	20.2	At1g49730	841396	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
25.2	99.6	217.9	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
25.1	99.6	16.5	At1g31310	840019	hydroxyproline-rich glycoprotein family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
24.8	99.6	23.9	At3g01140	821209	MYB106 (myb domain protein 106)	Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.	O.I.	C.G.	H.G.
24.7	99.6	10.5	At1g68480	843177	JAG (JAGGED)	Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development.	O.I.	C.G.	H.G.
24.2	99.6	24.2	At5g66940	836828	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
24.0	99.6	113.9	At3g61310	825303	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
23.6	99.6	11.8	At1g50970	841519	membrane trafficking VPS53 family protein	F:transporter activity;P:transport;C:endomembrane system;MFOPBA	O.I.	C.G.	H.G.
23.1	99.6	22.1	At5g46880	834733	HB-7 (HOMEOBOX-7)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOB	O.I.	C.G.	H.G.
23.1	99.6	7.3	At1g75430	843879	BLH11 (BEL1-LIKE HOMEODOMAIN 11)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
22.9	99.6	105.1	At4g21750	828263	ATML1 (MERISTEM LAYER 1)	Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.	O.I.	C.G.	H.G.
22.7	99.6	27.6	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
22.7	99.6	18.3	At5g47380	834785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
22.1	99.6	128.1	At4g38660	830022	thaumatin, putative	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV	O.I.	C.G.	H.G.
21.8	99.6	99.1	At5g23940	832459	EMB3009 (embryo defective 3009)	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
21.6	99.6	87.2	At4g37750	829931	ANT (AINTEGUMENTA)	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.	O.I.	C.G.	H.G.
21.6	99.6	19.2	At5g63920	836513	DNA topoisomerase III alpha, putative	F:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;BOMPAFV	O.I.	C.G.	H.G.
21.5	99.6	31.6	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.4	99.6	54.5	At4g04850	825822	KEA3	member of Putative potassium transporter family	O.I.	C.G.	H.G.
21.3	99.6	19.5	At1g76630	843996	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP	O.I.	C.G.	H.G.
21.2	99.6	31.4	At2g36810	818253	binding	F:binding;P:biological_process unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
21.1	99.6	16.2	At1g66730	842991	ATP dependent DNA ligase family protein	F:DNA binding, DNA ligase (ATP) activity, ATP binding;P:DNA repair, DNA replication, DNA recombination;C:chloroplast;BOMFAVP	O.I.	C.G.	H.G.
20.4	99.6	13.8	At1g17920	838371	HDG12 (HOMEODOMAIN GLABROUS 12)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.	O.I.	C.G.	H.G.
19.3	99.6	33.2	At1g05230	839256	HDG2 (HOMEODOMAIN GLABROUS 2)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
19.2	99.6	64.5	At4g15620	827239	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.1	99.6	51.1	At4g28780	828999	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
18.9	99.5	13.8	At3g02500	821065	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.6	99.5	10.3	At5g11320	831003	YUC4 (YUCCA4)	Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.	O.I.	C.G.	H.G.
18.3	99.5	41.6	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
18.1	99.5	36.2	At4g32980	829435	ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)	Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.	O.I.	C.G.	H.G.
18.1	99.5	27.7	At3g26932	822310	DRB3 (dsRNA-binding protein 3)	F:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular;BPMOV	O.I.	C.G.	H.G.
18.0	99.5	37.3	At4g18020	827527	APRR2	Encodes pseudo-response regulator 2 (APRR2).	O.I.	C.G.	H.G.
18.0	99.5	30.7	At5g07690	830662	ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)	Encodes a putative transcription factor (MYB29).	O.I.	C.G.	H.G.
17.9	99.5	23.7	At4g32710	3770575	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
17.8	99.5	89.5	At2g03090	814838	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
17.8	99.5	21.5	At3g46490	823802	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
17.7	99.5	28.8	At2g36400	818213	AtGRF3 (GROWTH-REGULATING FACTOR 3)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower.	O.I.	C.G.	H.G.
17.6	99.5	61.9	At3g55130	824679	ATWBC19 (White-Brown Complex homolog 19)	Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.	O.I.	C.G.	H.G.
17.6	99.5	20.6	At5g67100	836845	ICU2 (INCURVATA2)	Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.	O.I.	C.G.	H.G.
17.4	99.5	18.1	At5g58760	835990	DDB2 (damaged DNA-binding 2)	F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA	O.I.	C.G.	H.G.
17.4	99.5	14.3	At5g45780	834618	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
17.3	99.5	15.3	At1g55200	841963	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
17.2	99.5	58.0	At4g34160	829564	CYCD3	encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.	O.I.	C.G.	H.G.
17.0	99.5	98.8	At3g56370	824804	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
16.9	99.5	12.0	At4g03205	828029	coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative	F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP	O.I.	C.G.	H.G.
16.8	99.5	36.9	At4g09510	826535	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
16.8	99.5	17.0	At1g79420	844280	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.7	99.5	43.3	At2g34710	818036	PHB (PHABULOSA)	Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.	O.I.	C.G.	H.G.
16.7	99.5	10.1	At3g26920	822308	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
16.5	99.5	23.4	At2g21300	816669	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOPFB	O.I.	C.G.	H.G.
16.2	99.5	87.3	At3g29030	822543	EXPA5 (EXPANSIN A5)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
16.0	99.5	46.8	At5g48360	834889	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA	O.I.	C.G.	H.G.
16.0	99.5	7.0	At3g49950	824157	scarecrow transcription factor family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;PB	O.I.	C.G.	H.G.
15.9	99.5	95.3	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
15.9	99.5	20.7	At5g43080	834324	CYCA3	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
15.9	99.5	15.9	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
15.7	99.5	42.2	At1g12750	837831	ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA	O.I.	C.G.	H.G.
15.7	99.5	10.4	At1g05470	837048	CVP2 (COTYLEDON VASCULAR PATTERN 2)	Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.	O.I.	C.G.	H.G.
15.6	99.5	27.3	At5g57590	835863	BIO1 (biotin auxotroph 1)	Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.	O.I.	C.G.	H.G.
15.6	99.5	23.3	At5g41070	834109	DRB5 (DSRNA-BINDING PROTEIN 5)	Encodes a double-stranded RNA binding protein.	O.I.	C.G.	H.G.
15.3	99.4	29.0	At4g00820	828002	iqd17 (IQ-domain 17)	F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVB	O.I.	C.G.	H.G.
15.1	99.4	25.5	At5g27360	832795	SFP2	Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.	O.I.	C.G.	H.G.
15.1	99.4	23.0	At3g54990	824664	SMZ (SCHLAFMUTZE)	Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
15.0	99.4	33.2	At5g43020	834317	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
14.9	99.4	21.2	At3g57830	824952	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
14.9	99.4	13.0	At1g65620	842873	AS2 (ASYMMETRIC LEAVES 2)	required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	O.I.	C.G.	H.G.
14.7	99.4	31.5	At1g80760	844415	NIP6	Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.	O.I.	C.G.	H.G.
14.6	99.4	66.4	At1g14410	838003	WHY1 (WHIRLY 1)	Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.	O.I.	C.G.	H.G.
14.6	99.4	30.6	At1g34210	840320	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production.	O.I.	C.G.	H.G.
14.4	99.4	123.9	At1g47530	841162	ripening-responsive protein, putative	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport, ripening;C:plasma membrane, membrane;BOPFMA	O.I.	C.G.	H.G.
14.4	99.4	58.2	At4g02060	828153	PRL (PROLIFERA)	Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.	O.I.	C.G.	H.G.
14.4	99.4	51.3	At4g39510	830105	CYP96A12	member of CYP96A	O.I.	C.G.	H.G.
14.2	99.4	197.2	At4g22490	828344	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
14.2	99.4	22.8	At3g13000	820486	transcription factor	F:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMF	O.I.	C.G.	H.G.
14.2	99.4	10.2	At5g46510	834694	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA	O.I.	C.G.	H.G.
14.1	99.4	64.0	At3g17840	821053	RLK902	Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.	O.I.	C.G.	H.G.
14.0	99.4	66.0	At4g32570	829392	TIFY8 (TIFY DOMAIN PROTEIN 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
14.0	99.4	20.4	At3g02890	821192	PHD finger protein-related	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
13.9	99.4	53.6	At1g69420	843274	zinc finger (DHHC type) family protein	F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP	O.I.	C.G.	H.G.
13.9	99.4	25.7	At5g45920	834632	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO	O.I.	C.G.	H.G.

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GSM ID	GSM318624
Assay name	Apex_octa_18DAS_1
GSE experiment	GSE12691: Knockdown and overexpression of CIN-TCP genes

Microarray experiments to specifically-expressed genes

GSM ID GSM318624 Assay name Apex_octa_18DAS_1 GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes

GSM ID GSM318624

Assay name Apex_octa_18DAS_1

GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes