CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM318621

Assay name Apex_mir-3TCP_14DAS_2

GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
115.7 99.9 30.0 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family O.I. C.G. H.G.
65.2 99.8 54.0 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB O.I. C.G. H.G.
58.8 99.8 68.5 At4g02850 828160 phenazine biosynthesis PhzC/PhzF family protein F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
45.0 99.8 64.1 At5g59330 836052 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system O.I. C.G. H.G.
40.9 99.8 42.8 At1g06100 837119 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
33.7 99.7 33.9 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
33.3 99.7 34.2 At4g38950 830050 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF O.I. C.G. H.G.
32.6 99.7 171.9 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
31.3 99.7 16.3 At4g03205 828029 coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP O.I. C.G. H.G.
26.4 99.7 140.1 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
25.8 99.7 17.9 At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. O.I. C.G. H.G.
24.5 99.6 48.1 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
24.1 99.6 34.1 At3g55020 824668 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA O.I. C.G. H.G.
23.9 99.6 19.6 At1g49730 841396 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
22.7 99.6 16.1 At2g31150 817671 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA O.I. C.G. H.G.
22.0 99.6 13.8 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
21.9 99.6 38.8 At4g20130 827759 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO O.I. C.G. H.G.
21.7 99.6 43.1 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV O.I. C.G. H.G.
21.6 99.6 62.4 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
21.1 99.6 43.9 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
21.0 99.6 67.1 At1g30520 839932 AAE14 (Acyl-Activating Enzyme 14) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal. O.I. C.G. H.G.
20.8 99.6 79.4 At1g14410 838003 WHY1 (WHIRLY 1) Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. O.I. C.G. H.G.
20.6 99.6 42.2 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP O.I. C.G. H.G.
20.5 99.6 196.4 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
20.3 99.6 50.6 At1g14030 837964 ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO O.I. C.G. H.G.
20.3 99.6 9.5 At4g03270 828000 CYCD6 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
20.1 99.6 34.2 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF O.I. C.G. H.G.
20.0 99.6 54.8 At5g16715 831533 EMB2247 (embryo defective 2247) F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP O.I. C.G. H.G.
19.4 99.6 16.9 At5g47380 834785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
19.0 99.5 45.2 At3g03710 821181 RIF10 (resistant to inhibition with FSM 10) Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings. O.I. C.G. H.G.
18.9 99.5 99.5 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. C.G. H.G.
18.8 99.5 59.2 At5g51100 835183 FSD2 (FE SUPEROXIDE DISMUTASE 2) Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. O.I. C.G. H.G.
18.7 99.5 30.1 At4g38960 830051 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
18.6 99.5 24.8 At2g21300 816669 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOPFB O.I. C.G. H.G.
18.4 99.5 26.0 At4g00480 827965 myc-related transcription factor (MYC1) MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus O.I. C.G. H.G.
18.2 99.5 39.3 At5g63420 836461 emb2746 (embryo defective 2746) F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV O.I. C.G. H.G.
17.8 99.5 8.8 At3g15550 820794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
17.4 99.5 101.4 At1g66430 842961 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMF O.I. C.G. H.G.
17.1 99.5 15.0 At1g21060 838700 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOF O.I. C.G. H.G.
16.8 99.5 48.3 At4g04850 825822 KEA3 member of Putative potassium transporter family O.I. C.G. H.G.
16.6 99.5 17.6 At1g72410 843573 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVA O.I. C.G. H.G.
16.5 99.5 25.4 At2g29890 817539 VLN1 (VILLIN-LIKE 1) Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization. O.I. C.G. H.G.
16.4 99.5 212.3 At4g22490 828344 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
16.4 99.5 11.6 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
16.2 99.5 50.8 At4g26555 828762 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFA O.I. C.G. H.G.
16.0 99.5 33.8 At4g24610 828563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFPB O.I. C.G. H.G.
16.0 99.5 21.2 At1g76310 843964 CYCB2 core cell cycle genes O.I. C.G. H.G.
15.8 99.5 33.1 At3g57470 824914 peptidase M16 family protein / insulinase family protein F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
15.6 99.5 22.6 At3g55660 824732 ROPGEF6 Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. O.I. C.G. H.G.
15.5 99.5 20.0 At3g46490 823802 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
15.4 99.5 157.8 At2g47940 819406 DEGP2 Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. O.I. C.G. H.G.
15.4 99.5 63.1 At3g10690 820238 DNA gyrase subunit A family protein F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA O.I. C.G. H.G.
15.4 99.5 59.9 At1g79560 844294 FTSH12 (FTSH PROTEASE 12) encodes an FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
15.3 99.4 14.7 At1g10930 837636 RECQ4A DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. O.I. C.G. H.G.
15.1 99.4 38.9 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
14.8 99.4 37.8 At5g44560 834483 VPS2.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB O.I. C.G. H.G.
14.8 99.4 23.2 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
14.7 99.4 32.5 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal O.I. C.G. H.G.
14.3 99.4 21.4 At2g27980 817342 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOB O.I. C.G. H.G.
14.2 99.4 22.8 At3g13000 820486 transcription factor F:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMF O.I. C.G. H.G.
14.1 99.4 72.5 At5g02770 831253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPF O.I. C.G. H.G.
14.1 99.4 12.3 At2g41340 818732 RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D) NRPE5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
14.0 99.4 115.3 At4g24750 828577 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA O.I. C.G. H.G.
14.0 99.4 51.4 At2g34640 818029 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. O.I. C.G. H.G.
13.7 99.4 35.9 At4g00180 827914 YAB3 (YABBY3) YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. O.I. C.G. H.G.
13.7 99.4 21.7 At5g60930 836214 chromosome-associated kinesin, putative F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV O.I. C.G. H.G.
13.6 99.4 99.3 At5g16250 831485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.6 99.4 46.4 At5g24620 832533 thaumatin-like protein, putative F:unknown;P:response to other organism;C:endomembrane system;MPOFBVA O.I. C.G. H.G.
13.5 99.4 48.2 At3g48110 823966 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) glycine-tRNA ligase O.I. C.G. H.G.
13.5 99.4 20.8 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. O.I. C.G. H.G.
13.5 99.4 9.3 At5g24750 832544 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFPOVM O.I. C.G. H.G.
13.4 99.4 17.3 At4g15430 827214 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
13.4 99.4 13.5 At3g20150 821558 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV O.I. C.G. H.G.
13.3 99.4 129.3 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
13.3 99.4 41.8 At3g16290 820876 EMB2083 (embryo defective 2083) F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV O.I. C.G. H.G.
13.3 99.4 38.8 At1g12750 837831 ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA O.I. C.G. H.G.
13.3 99.4 14.4 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
13.2 99.4 60.7 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
13.2 99.4 47.3 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.2 99.4 43.1 At5g10690 830933 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
13.2 99.4 41.3 At1g60600 842354 ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4) Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport. O.I. C.G. H.G.
13.2 99.4 18.7 At5g19210 832041 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:unknown;BMOFPAV O.I. C.G. H.G.
13.1 99.4 27.3 At1g05230 839256 HDG2 (HOMEODOMAIN GLABROUS 2) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
13.0 99.4 90.6 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
13.0 99.4 17.7 At2g40690 818664 GLY1 Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway. O.I. C.G. H.G.
12.9 99.3 36.6 At2g30695 817620 - F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP O.I. C.G. H.G.
12.9 99.3 19.9 At1g80370 844377 CYCA2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB O.I. C.G. H.G.
12.9 99.3 19.5 At1g01860 839283 PFC1 (PALEFACE 1) dimethyladenosine transferase O.I. C.G. H.G.
12.8 99.3 59.3 At3g04260 819581 PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3) F:DNA binding, nucleic acid binding;P:unknown;C:plastid chromosome, nucleus, chloroplast, nucleoid, membrane;MOPFBVA O.I. C.G. H.G.
12.8 99.3 19.2 At3g21300 821684 RNA methyltransferase family protein F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV O.I. C.G. H.G.
12.7 99.3 9.6 At4g31805 829309 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB O.I. C.G. H.G.
12.6 99.3 33.7 At3g27180 822337 unknown protein F:unknown;P:unknown;C:chloroplast;BOMPAF O.I. C.G. H.G.
12.5 99.3 31.9 At1g28710 839771 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
12.5 99.3 29.8 At3g13490 820551 OVA5 (OVULE ABORTION 5) Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype. O.I. C.G. H.G.
12.5 99.3 23.1 At4g02800 828171 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA O.I. C.G. H.G.
12.3 99.3 83.7 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
12.3 99.3 14.2 At4g19020 827640 CMT2 (chromomethylase 2) F:chromatin binding, DNA binding;P:chromatin assembly or disassembly, DNA methylation;C:chromatin, nucleus;BOMPFAV O.I. C.G. H.G.
12.2 99.3 27.2 At3g44970 823632 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV O.I. C.G. H.G.
12.2 99.3 23.5 At5g07630 830656 lipid transporter F:lipid transporter activity;P:nuclear division, lipid transport;C:membrane;MFOPB O.I. C.G. H.G.
12.0 99.3 67.6 At4g02790 828174 GTP-binding family protein F:GTP binding;P:biological_process unknown;C:intracellular, chloroplast;BOMFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
115.7	99.9	30.0	At5g60780	836199	ATNRT2.3	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
65.2	99.8	54.0	At5g64110	836532	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB	O.I.	C.G.	H.G.
58.8	99.8	68.5	At4g02850	828160	phenazine biosynthesis PhzC/PhzF family protein	F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
45.0	99.8	64.1	At5g59330	836052	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system	O.I.	C.G.	H.G.
40.9	99.8	42.8	At1g06100	837119	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
33.7	99.7	33.9	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
33.3	99.7	34.2	At4g38950	830050	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF	O.I.	C.G.	H.G.
32.6	99.7	171.9	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
31.3	99.7	16.3	At4g03205	828029	coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative	F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP	O.I.	C.G.	H.G.
26.4	99.7	140.1	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
25.8	99.7	17.9	At5g53210	835402	SPCH (SPEECHLESS)	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.	O.I.	C.G.	H.G.
24.5	99.6	48.1	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
24.1	99.6	34.1	At3g55020	824668	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
23.9	99.6	19.6	At1g49730	841396	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
22.7	99.6	16.1	At2g31150	817671	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA	O.I.	C.G.	H.G.
22.0	99.6	13.8	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
21.9	99.6	38.8	At4g20130	827759	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO	O.I.	C.G.	H.G.
21.7	99.6	43.1	At4g23940	828494	FtsH protease, putative	F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
21.6	99.6	62.4	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
21.1	99.6	43.9	At5g13840	831230	FZR3 (FIZZY-RELATED 3)	F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
21.0	99.6	67.1	At1g30520	839932	AAE14 (Acyl-Activating Enzyme 14)	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	O.I.	C.G.	H.G.
20.8	99.6	79.4	At1g14410	838003	WHY1 (WHIRLY 1)	Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.	O.I.	C.G.	H.G.
20.6	99.6	42.2	At3g13180	820508	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
20.5	99.6	196.4	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
20.3	99.6	50.6	At1g14030	837964	ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative	F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO	O.I.	C.G.	H.G.
20.3	99.6	9.5	At4g03270	828000	CYCD6	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
20.1	99.6	34.2	At4g30720	829195	electron carrier/ oxidoreductase	F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
20.0	99.6	54.8	At5g16715	831533	EMB2247 (embryo defective 2247)	F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP	O.I.	C.G.	H.G.
19.4	99.6	16.9	At5g47380	834785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
19.0	99.5	45.2	At3g03710	821181	RIF10 (resistant to inhibition with FSM 10)	Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.	O.I.	C.G.	H.G.
18.9	99.5	99.5	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	O.I.	C.G.	H.G.
18.8	99.5	59.2	At5g51100	835183	FSD2 (FE SUPEROXIDE DISMUTASE 2)	Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	O.I.	C.G.	H.G.
18.7	99.5	30.1	At4g38960	830051	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
18.6	99.5	24.8	At2g21300	816669	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOPFB	O.I.	C.G.	H.G.
18.4	99.5	26.0	At4g00480	827965	myc-related transcription factor (MYC1)	MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	O.I.	C.G.	H.G.
18.2	99.5	39.3	At5g63420	836461	emb2746 (embryo defective 2746)	F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV	O.I.	C.G.	H.G.
17.8	99.5	8.8	At3g15550	820794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
17.4	99.5	101.4	At1g66430	842961	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMF	O.I.	C.G.	H.G.
17.1	99.5	15.0	At1g21060	838700	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOF	O.I.	C.G.	H.G.
16.8	99.5	48.3	At4g04850	825822	KEA3	member of Putative potassium transporter family	O.I.	C.G.	H.G.
16.6	99.5	17.6	At1g72410	843573	COP1-interacting protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVA	O.I.	C.G.	H.G.
16.5	99.5	25.4	At2g29890	817539	VLN1 (VILLIN-LIKE 1)	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	O.I.	C.G.	H.G.
16.4	99.5	212.3	At4g22490	828344	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
16.4	99.5	11.6	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
16.2	99.5	50.8	At4g26555	828762	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFA	O.I.	C.G.	H.G.
16.0	99.5	33.8	At4g24610	828563	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFPB	O.I.	C.G.	H.G.
16.0	99.5	21.2	At1g76310	843964	CYCB2	core cell cycle genes	O.I.	C.G.	H.G.
15.8	99.5	33.1	At3g57470	824914	peptidase M16 family protein / insulinase family protein	F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
15.6	99.5	22.6	At3g55660	824732	ROPGEF6	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	O.I.	C.G.	H.G.
15.5	99.5	20.0	At3g46490	823802	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
15.4	99.5	157.8	At2g47940	819406	DEGP2	Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.	O.I.	C.G.	H.G.
15.4	99.5	63.1	At3g10690	820238	DNA gyrase subunit A family protein	F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA	O.I.	C.G.	H.G.
15.4	99.5	59.9	At1g79560	844294	FTSH12 (FTSH PROTEASE 12)	encodes an FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
15.3	99.4	14.7	At1g10930	837636	RECQ4A	DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.	O.I.	C.G.	H.G.
15.1	99.4	38.9	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
14.8	99.4	37.8	At5g44560	834483	VPS2.2	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB	O.I.	C.G.	H.G.
14.8	99.4	23.2	At3g63510	825526	FAD binding / catalytic/ tRNA dihydrouridine synthase	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
14.7	99.4	32.5	At1g18370	838418	HIK (HINKEL)	Mutant has cytokinesis defects; seedling lethal	O.I.	C.G.	H.G.
14.3	99.4	21.4	At2g27980	817342	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
14.2	99.4	22.8	At3g13000	820486	transcription factor	F:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMF	O.I.	C.G.	H.G.
14.1	99.4	72.5	At5g02770	831253	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPF	O.I.	C.G.	H.G.
14.1	99.4	12.3	At2g41340	818732	RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D)	NRPE5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
14.0	99.4	115.3	At4g24750	828577	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA	O.I.	C.G.	H.G.
14.0	99.4	51.4	At2g34640	818029	PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	O.I.	C.G.	H.G.
13.7	99.4	35.9	At4g00180	827914	YAB3 (YABBY3)	YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.	O.I.	C.G.	H.G.
13.7	99.4	21.7	At5g60930	836214	chromosome-associated kinesin, putative	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV	O.I.	C.G.	H.G.
13.6	99.4	99.3	At5g16250	831485	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.6	99.4	46.4	At5g24620	832533	thaumatin-like protein, putative	F:unknown;P:response to other organism;C:endomembrane system;MPOFBVA	O.I.	C.G.	H.G.
13.5	99.4	48.2	At3g48110	823966	EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)	glycine-tRNA ligase	O.I.	C.G.	H.G.
13.5	99.4	20.8	At4g05190	825867	ATK5 (ARABIDOPSIS THALIANA KINESIN 5)	ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.	O.I.	C.G.	H.G.
13.5	99.4	9.3	At5g24750	832544	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFPOVM	O.I.	C.G.	H.G.
13.4	99.4	17.3	At4g15430	827214	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
13.4	99.4	13.5	At3g20150	821558	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV	O.I.	C.G.	H.G.
13.3	99.4	129.3	At5g36910	833659	THI2.2 (THIONIN 2.2)	Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
13.3	99.4	41.8	At3g16290	820876	EMB2083 (embryo defective 2083)	F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV	O.I.	C.G.	H.G.
13.3	99.4	38.8	At1g12750	837831	ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA	O.I.	C.G.	H.G.
13.3	99.4	14.4	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
13.2	99.4	60.7	At1g15290	838097	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
13.2	99.4	47.3	At3g14190	820636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.2	99.4	43.1	At5g10690	830933	pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
13.2	99.4	41.3	At1g60600	842354	ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4)	Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.	O.I.	C.G.	H.G.
13.2	99.4	18.7	At5g19210	832041	DEAD/DEAH box helicase, putative	F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
13.1	99.4	27.3	At1g05230	839256	HDG2 (HOMEODOMAIN GLABROUS 2)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
13.0	99.4	90.6	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
13.0	99.4	17.7	At2g40690	818664	GLY1	Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway.	O.I.	C.G.	H.G.
12.9	99.3	36.6	At2g30695	817620	-	F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP	O.I.	C.G.	H.G.
12.9	99.3	19.9	At1g80370	844377	CYCA2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB	O.I.	C.G.	H.G.
12.9	99.3	19.5	At1g01860	839283	PFC1 (PALEFACE 1)	dimethyladenosine transferase	O.I.	C.G.	H.G.
12.8	99.3	59.3	At3g04260	819581	PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3)	F:DNA binding, nucleic acid binding;P:unknown;C:plastid chromosome, nucleus, chloroplast, nucleoid, membrane;MOPFBVA	O.I.	C.G.	H.G.
12.8	99.3	19.2	At3g21300	821684	RNA methyltransferase family protein	F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV	O.I.	C.G.	H.G.
12.7	99.3	9.6	At4g31805	829309	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB	O.I.	C.G.	H.G.
12.6	99.3	33.7	At3g27180	822337	unknown protein	F:unknown;P:unknown;C:chloroplast;BOMPAF	O.I.	C.G.	H.G.
12.5	99.3	31.9	At1g28710	839771	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
12.5	99.3	29.8	At3g13490	820551	OVA5 (OVULE ABORTION 5)	Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.	O.I.	C.G.	H.G.
12.5	99.3	23.1	At4g02800	828171	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA	O.I.	C.G.	H.G.
12.3	99.3	83.7	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
12.3	99.3	14.2	At4g19020	827640	CMT2 (chromomethylase 2)	F:chromatin binding, DNA binding;P:chromatin assembly or disassembly, DNA methylation;C:chromatin, nucleus;BOMPFAV	O.I.	C.G.	H.G.
12.2	99.3	27.2	At3g44970	823632	cytochrome P450 family protein	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV	O.I.	C.G.	H.G.
12.2	99.3	23.5	At5g07630	830656	lipid transporter	F:lipid transporter activity;P:nuclear division, lipid transport;C:membrane;MFOPB	O.I.	C.G.	H.G.
12.0	99.3	67.6	At4g02790	828174	GTP-binding family protein	F:GTP binding;P:biological_process unknown;C:intracellular, chloroplast;BOMFPA	O.I.	C.G.	H.G.

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GSM ID	GSM318621
Assay name	Apex_mir-3TCP_14DAS_2
GSE experiment	GSE12691: Knockdown and overexpression of CIN-TCP genes

Microarray experiments to specifically-expressed genes

GSM ID GSM318621 Assay name Apex_mir-3TCP_14DAS_2 GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes

GSM ID GSM318621

Assay name Apex_mir-3TCP_14DAS_2

GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes