CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM318618

Assay name Apex_Col_14DAS_1

GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
105.6 99.9 28.7 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family O.I. C.G. H.G.
39.8 99.8 36.9 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
39.7 99.8 32.0 At3g46490 823802 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
39.1 99.8 25.1 At1g49730 841396 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
38.6 99.8 59.4 At5g59330 836052 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system O.I. C.G. H.G.
38.5 99.8 219.5 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
38.2 99.8 55.3 At4g02850 828160 phenazine biosynthesis PhzC/PhzF family protein F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
34.1 99.7 159.2 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
27.9 99.7 82.9 At3g30720 822807 QQS (QUA-QUINE STARCH) F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;P O.I. C.G. H.G.
26.9 99.7 49.6 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
26.0 99.7 34.1 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB O.I. C.G. H.G.
24.8 99.6 48.4 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
24.7 99.6 34.6 At4g38960 830051 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
24.6 99.6 215.5 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
24.6 99.6 10.3 At3g15550 820794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
24.2 99.6 29.8 At3g13000 820486 transcription factor F:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMF O.I. C.G. H.G.
23.6 99.6 254.3 At4g22490 828344 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
23.2 99.6 19.0 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
22.5 99.6 16.7 At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. O.I. C.G. H.G.
22.3 99.6 13.9 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
22.2 99.6 18.8 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
21.9 99.6 20.2 At1g72410 843573 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVA O.I. C.G. H.G.
21.8 99.6 15.4 At1g31310 840019 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA O.I. C.G. H.G.
21.0 99.6 46.1 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. C.G. H.G.
20.0 99.6 13.0 At4g03205 828029 coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP O.I. C.G. H.G.
19.6 99.6 133.2 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
19.2 99.6 55.3 At4g26555 828762 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFA O.I. C.G. H.G.
19.2 99.6 15.9 At1g21060 838700 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOF O.I. C.G. H.G.
19.0 99.5 73.0 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
18.7 99.5 16.6 At5g47380 834785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
18.1 99.5 24.6 At2g21300 816669 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOPFB O.I. C.G. H.G.
17.8 99.5 169.5 At2g47940 819406 DEGP2 Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. O.I. C.G. H.G.
17.8 99.5 12.1 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
17.2 99.5 55.6 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
17.2 99.5 24.6 At4g38950 830050 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF O.I. C.G. H.G.
17.1 99.5 8.7 At4g03270 828000 CYCD6 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
16.1 99.5 49.1 At5g16715 831533 EMB2247 (embryo defective 2247) F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP O.I. C.G. H.G.
16.1 99.5 47.4 At4g04850 825822 KEA3 member of Putative potassium transporter family O.I. C.G. H.G.
16.1 99.5 26.8 At1g06100 837119 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
15.8 99.5 21.8 At3g57830 824952 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
15.7 99.5 13.4 At2g31150 817671 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA O.I. C.G. H.G.
15.6 99.5 27.4 At3g55020 824668 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA O.I. C.G. H.G.
15.5 99.5 94.0 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
15.1 99.4 85.3 At4g21750 828263 ATML1 (MERISTEM LAYER 1) Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. O.I. C.G. H.G.
15.0 99.4 25.0 At1g03780 839140 targeting protein-related Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. O.I. C.G. H.G.
15.0 99.4 17.8 At3g63300 825505 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF O.I. C.G. H.G.
14.8 99.4 20.4 At1g76310 843964 CYCB2 core cell cycle genes O.I. C.G. H.G.
14.6 99.4 133.3 At5g54510 835539 DFL1 (DWARF IN LIGHT 1) Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3). O.I. C.G. H.G.
14.6 99.4 26.0 At2g36810 818253 binding F:binding;P:biological_process unknown;C:chloroplast;MPO O.I. C.G. H.G.
14.6 99.4 21.7 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. O.I. C.G. H.G.
14.5 99.4 66.2 At1g14410 838003 WHY1 (WHIRLY 1) Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. O.I. C.G. H.G.
14.4 99.4 17.9 At4g15430 827214 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
14.3 99.4 13.8 At2g45880 819196 BAM7 (BETA-AMYLASE 7) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PBOF O.I. C.G. H.G.
14.2 99.4 21.9 At5g38140 833794 NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
14.1 99.4 39.8 At2g34710 818036 PHB (PHABULOSA) Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA. O.I. C.G. H.G.
14.1 99.4 32.7 At2g32440 817805 KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2) ent-kaurenoic acid hydroxylase (KAO2) O.I. C.G. H.G.
14.1 99.4 23.5 At2g29890 817539 VLN1 (VILLIN-LIKE 1) Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization. O.I. C.G. H.G.
14.0 99.4 52.3 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. O.I. C.G. H.G.
13.9 99.4 40.1 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
13.7 99.4 86.2 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
13.7 99.4 49.4 At1g66760 842994 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMA O.I. C.G. H.G.
13.7 99.4 18.0 At1g15570 838127 CYCA2 A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues. O.I. C.G. H.G.
13.7 99.4 15.0 At4g19020 827640 CMT2 (chromomethylase 2) F:chromatin binding, DNA binding;P:chromatin assembly or disassembly, DNA methylation;C:chromatin, nucleus;BOMPFAV O.I. C.G. H.G.
13.6 99.4 40.9 At1g66250 842942 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
13.5 99.4 98.7 At5g16250 831485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.5 99.4 47.7 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.4 99.4 20.4 At1g80370 844377 CYCA2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB O.I. C.G. H.G.
13.2 99.4 35.7 At5g44560 834483 VPS2.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB O.I. C.G. H.G.
13.0 99.4 20.6 At3g55660 824732 ROPGEF6 Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. O.I. C.G. H.G.
12.9 99.3 30.6 At2g35920 818165 helicase domain-containing protein F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;MBOFPV O.I. C.G. H.G.
12.9 99.3 12.3 At2g40640 818659 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.8 99.3 38.1 At1g12750 837831 ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA O.I. C.G. H.G.
12.7 99.3 86.7 At1g66430 842961 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMF O.I. C.G. H.G.
12.7 99.3 48.7 At5g51100 835183 FSD2 (FE SUPEROXIDE DISMUTASE 2) Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. O.I. C.G. H.G.
12.5 99.3 20.9 At1g17850 838364 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPMF O.I. C.G. H.G.
12.4 99.3 32.8 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP O.I. C.G. H.G.
12.3 99.3 80.2 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. C.G. H.G.
12.2 99.3 81.6 At1g70940 843432 PIN3 (PIN-FORMED 3) A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. O.I. C.G. H.G.
12.1 99.3 9.4 At4g31805 829309 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB O.I. C.G. H.G.
12.0 99.3 28.7 At4g20130 827759 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO O.I. C.G. H.G.
11.9 99.3 23.6 At1g69160 843247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV O.I. C.G. H.G.
11.8 99.3 26.6 At5g57780 835886 - F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
11.8 99.3 22.1 At3g12150 820392 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MBPO O.I. C.G. H.G.
11.6 99.3 141.7 At1g08520 837374 CHLD F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA O.I. C.G. H.G.
11.6 99.3 91.3 At4g37550 829910 formamidase, putative / formamide amidohydrolase, putative F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAP O.I. C.G. H.G.
11.6 99.3 46.8 At2g34640 818029 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. O.I. C.G. H.G.
11.5 99.3 33.8 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
11.5 99.3 22.3 At1g48610 841282 AT hook motif-containing protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MBOPFV O.I. C.G. H.G.
11.4 99.3 32.6 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP O.I. C.G. H.G.
11.4 99.3 23.7 At2g26760 817217 CYCB1 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
11.3 99.3 28.6 At4g32980 829435 ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM. O.I. C.G. H.G.
11.3 99.3 27.6 At1g80760 844415 NIP6 Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously. O.I. C.G. H.G.
11.3 99.3 22.1 At5g27360 832795 SFP2 Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence. O.I. C.G. H.G.
11.2 99.2 48.9 At1g30520 839932 AAE14 (Acyl-Activating Enzyme 14) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal. O.I. C.G. H.G.
11.2 99.2 20.2 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
11.2 99.2 13.8 At5g63920 836513 DNA topoisomerase III alpha, putative F:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;BOMPAFV O.I. C.G. H.G.
11.1 99.2 83.6 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
11.1 99.2 76.9 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
11.1 99.2 74.1 At3g52840 824450 BGAL2 (beta-galactosidase 2) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:apoplast;PBMFOA O.I. C.G. H.G.
11.0 99.2 18.6 At4g32710 3770575 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
105.6	99.9	28.7	At5g60780	836199	ATNRT2.3	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
39.8	99.8	36.9	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
39.7	99.8	32.0	At3g46490	823802	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
39.1	99.8	25.1	At1g49730	841396	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
38.6	99.8	59.4	At5g59330	836052	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system	O.I.	C.G.	H.G.
38.5	99.8	219.5	At5g36910	833659	THI2.2 (THIONIN 2.2)	Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
38.2	99.8	55.3	At4g02850	828160	phenazine biosynthesis PhzC/PhzF family protein	F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
34.1	99.7	159.2	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
27.9	99.7	82.9	At3g30720	822807	QQS (QUA-QUINE STARCH)	F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;P	O.I.	C.G.	H.G.
26.9	99.7	49.6	At5g13840	831230	FZR3 (FIZZY-RELATED 3)	F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
26.0	99.7	34.1	At5g64110	836532	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB	O.I.	C.G.	H.G.
24.8	99.6	48.4	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
24.7	99.6	34.6	At4g38960	830051	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
24.6	99.6	215.5	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
24.6	99.6	10.3	At3g15550	820794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
24.2	99.6	29.8	At3g13000	820486	transcription factor	F:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMF	O.I.	C.G.	H.G.
23.6	99.6	254.3	At4g22490	828344	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
23.2	99.6	19.0	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
22.5	99.6	16.7	At5g53210	835402	SPCH (SPEECHLESS)	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.	O.I.	C.G.	H.G.
22.3	99.6	13.9	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
22.2	99.6	18.8	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
21.9	99.6	20.2	At1g72410	843573	COP1-interacting protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVA	O.I.	C.G.	H.G.
21.8	99.6	15.4	At1g31310	840019	hydroxyproline-rich glycoprotein family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
21.0	99.6	46.1	At1g02690	839517	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	C.G.	H.G.
20.0	99.6	13.0	At4g03205	828029	coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative	F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP	O.I.	C.G.	H.G.
19.6	99.6	133.2	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
19.2	99.6	55.3	At4g26555	828762	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFA	O.I.	C.G.	H.G.
19.2	99.6	15.9	At1g21060	838700	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOF	O.I.	C.G.	H.G.
19.0	99.5	73.0	At1g15290	838097	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
18.7	99.5	16.6	At5g47380	834785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
18.1	99.5	24.6	At2g21300	816669	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOPFB	O.I.	C.G.	H.G.
17.8	99.5	169.5	At2g47940	819406	DEGP2	Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.	O.I.	C.G.	H.G.
17.8	99.5	12.1	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
17.2	99.5	55.6	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
17.2	99.5	24.6	At4g38950	830050	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF	O.I.	C.G.	H.G.
17.1	99.5	8.7	At4g03270	828000	CYCD6	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
16.1	99.5	49.1	At5g16715	831533	EMB2247 (embryo defective 2247)	F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP	O.I.	C.G.	H.G.
16.1	99.5	47.4	At4g04850	825822	KEA3	member of Putative potassium transporter family	O.I.	C.G.	H.G.
16.1	99.5	26.8	At1g06100	837119	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
15.8	99.5	21.8	At3g57830	824952	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
15.7	99.5	13.4	At2g31150	817671	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA	O.I.	C.G.	H.G.
15.6	99.5	27.4	At3g55020	824668	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
15.5	99.5	94.0	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
15.1	99.4	85.3	At4g21750	828263	ATML1 (MERISTEM LAYER 1)	Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.	O.I.	C.G.	H.G.
15.0	99.4	25.0	At1g03780	839140	targeting protein-related	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	O.I.	C.G.	H.G.
15.0	99.4	17.8	At3g63300	825505	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF	O.I.	C.G.	H.G.
14.8	99.4	20.4	At1g76310	843964	CYCB2	core cell cycle genes	O.I.	C.G.	H.G.
14.6	99.4	133.3	At5g54510	835539	DFL1 (DWARF IN LIGHT 1)	Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).	O.I.	C.G.	H.G.
14.6	99.4	26.0	At2g36810	818253	binding	F:binding;P:biological_process unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
14.6	99.4	21.7	At4g05190	825867	ATK5 (ARABIDOPSIS THALIANA KINESIN 5)	ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.	O.I.	C.G.	H.G.
14.5	99.4	66.2	At1g14410	838003	WHY1 (WHIRLY 1)	Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.	O.I.	C.G.	H.G.
14.4	99.4	17.9	At4g15430	827214	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
14.3	99.4	13.8	At2g45880	819196	BAM7 (BETA-AMYLASE 7)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PBOF	O.I.	C.G.	H.G.
14.2	99.4	21.9	At5g38140	833794	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
14.1	99.4	39.8	At2g34710	818036	PHB (PHABULOSA)	Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.	O.I.	C.G.	H.G.
14.1	99.4	32.7	At2g32440	817805	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2)	ent-kaurenoic acid hydroxylase (KAO2)	O.I.	C.G.	H.G.
14.1	99.4	23.5	At2g29890	817539	VLN1 (VILLIN-LIKE 1)	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	O.I.	C.G.	H.G.
14.0	99.4	52.3	At4g34160	829564	CYCD3	encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.	O.I.	C.G.	H.G.
13.9	99.4	40.1	At3g17680	821035	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
13.7	99.4	86.2	At3g61310	825303	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
13.7	99.4	49.4	At1g66760	842994	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMA	O.I.	C.G.	H.G.
13.7	99.4	18.0	At1g15570	838127	CYCA2	A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.	O.I.	C.G.	H.G.
13.7	99.4	15.0	At4g19020	827640	CMT2 (chromomethylase 2)	F:chromatin binding, DNA binding;P:chromatin assembly or disassembly, DNA methylation;C:chromatin, nucleus;BOMPFAV	O.I.	C.G.	H.G.
13.6	99.4	40.9	At1g66250	842942	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
13.5	99.4	98.7	At5g16250	831485	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.5	99.4	47.7	At3g14190	820636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.4	99.4	20.4	At1g80370	844377	CYCA2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB	O.I.	C.G.	H.G.
13.2	99.4	35.7	At5g44560	834483	VPS2.2	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB	O.I.	C.G.	H.G.
13.0	99.4	20.6	At3g55660	824732	ROPGEF6	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	O.I.	C.G.	H.G.
12.9	99.3	30.6	At2g35920	818165	helicase domain-containing protein	F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;MBOFPV	O.I.	C.G.	H.G.
12.9	99.3	12.3	At2g40640	818659	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.8	99.3	38.1	At1g12750	837831	ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA	O.I.	C.G.	H.G.
12.7	99.3	86.7	At1g66430	842961	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMF	O.I.	C.G.	H.G.
12.7	99.3	48.7	At5g51100	835183	FSD2 (FE SUPEROXIDE DISMUTASE 2)	Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	O.I.	C.G.	H.G.
12.5	99.3	20.9	At1g17850	838364	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPMF	O.I.	C.G.	H.G.
12.4	99.3	32.8	At3g13180	820508	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
12.3	99.3	80.2	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	O.I.	C.G.	H.G.
12.2	99.3	81.6	At1g70940	843432	PIN3 (PIN-FORMED 3)	A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.	O.I.	C.G.	H.G.
12.1	99.3	9.4	At4g31805	829309	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB	O.I.	C.G.	H.G.
12.0	99.3	28.7	At4g20130	827759	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO	O.I.	C.G.	H.G.
11.9	99.3	23.6	At1g69160	843247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV	O.I.	C.G.	H.G.
11.8	99.3	26.6	At5g57780	835886	-	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
11.8	99.3	22.1	At3g12150	820392	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MBPO	O.I.	C.G.	H.G.
11.6	99.3	141.7	At1g08520	837374	CHLD	F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA	O.I.	C.G.	H.G.
11.6	99.3	91.3	At4g37550	829910	formamidase, putative / formamide amidohydrolase, putative	F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAP	O.I.	C.G.	H.G.
11.6	99.3	46.8	At2g34640	818029	PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	O.I.	C.G.	H.G.
11.5	99.3	33.8	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
11.5	99.3	22.3	At1g48610	841282	AT hook motif-containing protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MBOPFV	O.I.	C.G.	H.G.
11.4	99.3	32.6	At3g25980	822195	mitotic spindle checkpoint protein, putative (MAD2)	F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP	O.I.	C.G.	H.G.
11.4	99.3	23.7	At2g26760	817217	CYCB1	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
11.3	99.3	28.6	At4g32980	829435	ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)	Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.	O.I.	C.G.	H.G.
11.3	99.3	27.6	At1g80760	844415	NIP6	Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.	O.I.	C.G.	H.G.
11.3	99.3	22.1	At5g27360	832795	SFP2	Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.	O.I.	C.G.	H.G.
11.2	99.2	48.9	At1g30520	839932	AAE14 (Acyl-Activating Enzyme 14)	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	O.I.	C.G.	H.G.
11.2	99.2	20.2	At3g63510	825526	FAD binding / catalytic/ tRNA dihydrouridine synthase	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
11.2	99.2	13.8	At5g63920	836513	DNA topoisomerase III alpha, putative	F:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;BOMPAFV	O.I.	C.G.	H.G.
11.1	99.2	83.6	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
11.1	99.2	76.9	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
11.1	99.2	74.1	At3g52840	824450	BGAL2 (beta-galactosidase 2)	F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:apoplast;PBMFOA	O.I.	C.G.	H.G.
11.0	99.2	18.6	At4g32710	3770575	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.

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GSM ID	GSM318618
Assay name	Apex_Col_14DAS_1
GSE experiment	GSE12691: Knockdown and overexpression of CIN-TCP genes

Microarray experiments to specifically-expressed genes

GSM ID GSM318618 Assay name Apex_Col_14DAS_1 GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes

GSM ID GSM318618

Assay name Apex_Col_14DAS_1

GSE experiment GSE12691: Knockdown and overexpression of CIN-TCP genes