CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM318332

Assay name ML_35DAS_1

GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
241.1 100.0 78.1 At5g28030 832873 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
120.5 99.9 113.5 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
49.9 99.8 191.8 At4g03050 828104 AOP3 Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. O.I. C.G. H.G.
45.9 99.8 43.0 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
40.5 99.8 59.0 At1g76110 843943 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP O.I. C.G. H.G.
35.3 99.7 136.9 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
31.5 99.7 66.3 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
29.6 99.7 44.6 At1g80760 844415 NIP6 Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously. O.I. C.G. H.G.
28.0 99.7 37.8 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.9 99.7 163.9 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
24.0 99.6 89.4 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV O.I. C.G. H.G.
23.9 99.6 30.3 At5g20220 832144 zinc knuckle (CCHC-type) family protein F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB O.I. C.G. H.G.
23.6 99.6 199.0 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.6 99.6 48.6 At4g37560 829911 formamidase, putative / formamide amidohydrolase, putative F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP O.I. C.G. H.G.
23.2 99.6 93.1 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
23.1 99.6 142.1 At5g15950 831452 adenosylmethionine decarboxylase family protein F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
22.6 99.6 257.1 At5g65730 836702 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO O.I. C.G. H.G.
22.0 99.6 112.1 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
21.5 99.6 50.1 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
20.7 99.6 124.1 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
19.8 99.6 111.9 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP O.I. C.G. H.G.
18.6 99.5 175.1 At4g22570 828353 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1. O.I. C.G. H.G.
18.4 99.5 29.1 At5g44530 834480 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BOPFAM O.I. C.G. H.G.
17.4 99.5 27.2 At5g52030 835278 TraB protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP O.I. C.G. H.G.
17.2 99.5 70.9 At1g70580 843395 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 O.I. C.G. H.G.
16.7 99.5 73.8 At1g56120 842064 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;PMOBFVA O.I. C.G. H.G.
16.1 99.5 98.5 At4g26860 828793 pyridoxal phosphate binding F:pyridoxal phosphate binding;P:biological_process unknown;C:unknown;OBMFPA O.I. C.G. H.G.
16.1 99.5 66.3 At1g62250 842522 unknown protein F:unknown;P:unknown;C:chloroplast;P O.I. C.G. H.G.
16.1 99.5 49.2 At1g75100 843847 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. O.I. C.G. H.G.
16.1 99.5 43.8 At1g70610 843398 ATTAP1 member of TAP subfamily O.I. C.G. H.G.
16.1 99.5 38.9 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
15.9 99.5 51.6 At5g54130 835500 - - O.I. C.G. H.G.
15.7 99.5 70.3 At3g47430 823897 PEX11B member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. O.I. C.G. H.G.
15.7 99.5 39.3 At1g19715 838560 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB O.I. C.G. H.G.
15.6 99.5 115.0 At3g02870 821206 VTC4 Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis. O.I. C.G. H.G.
15.4 99.5 136.0 At1g64860 842794 SIGA (SIGMA FACTOR A) Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme O.I. C.G. H.G.
15.2 99.4 318.7 At5g49730 835036 ATFRO6 (FERRIC REDUCTION OXIDASE 6) Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner. O.I. C.G. H.G.
15.2 99.4 284.9 At4g26850 828792 VTC2 (vitamin c defective 2) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. O.I. C.G. H.G.
14.6 99.4 96.1 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
14.0 99.4 109.9 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
14.0 99.4 50.8 At3g27110 822330 peptidase M48 family protein F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF O.I. C.G. H.G.
13.7 99.4 66.6 At3g48200 823977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP O.I. C.G. H.G.
13.7 99.4 57.1 At3g01550 821114 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA O.I. C.G. H.G.
13.7 99.4 27.5 At1g73870 843723 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
13.5 99.4 43.3 At2g23420 816874 NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) F:nicotinate phosphoribosyltransferase activity;P:pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage;C:cellular_component unknown;BMOAPF O.I. C.G. H.G.
13.4 99.4 260.1 At5g67030 836838 ABA1 (ABA DEFICIENT 1) Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. O.I. C.G. H.G.
13.4 99.4 55.0 At4g37310 829886 CYP81H1 member of CYP81H O.I. C.G. H.G.
13.3 99.4 10.7 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
13.2 99.4 70.6 At2g37240 818301 - F:unknown;P:biological_process unknown;C:chloroplast;MPBOF O.I. C.G. H.G.
13.1 99.4 179.6 At5g43850 834407 ARD4 F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
12.9 99.3 127.8 At3g02020 821287 AK3 (ASPARTATE KINASE 3) encodes a monofunctional aspartate kinase O.I. C.G. H.G.
12.8 99.3 177.4 At1g65490 842861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.5 99.3 142.3 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
12.4 99.3 52.8 At5g48220 834875 indole-3-glycerol phosphate synthase, putative F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP O.I. C.G. H.G.
12.3 99.3 40.9 At3g19720 821509 ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5) Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP�ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. O.I. C.G. H.G.
12.3 99.3 31.7 At4g22200 828311 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. O.I. C.G. H.G.
12.2 99.3 92.1 At1g66330 842950 senescence-associated family protein F:unknown;P:senescence;C:unknown;PB O.I. C.G. H.G.
12.0 99.3 150.2 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
11.9 99.3 135.4 At2g29650 817515 PHT4 Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane. O.I. C.G. H.G.
11.9 99.3 33.6 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
11.9 99.3 29.3 At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. C.G. H.G.
11.8 99.3 84.3 At3g12320 820411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.8 99.3 49.4 At4g33470 829484 hda14 (histone deacetylase 14) Encodes HDA14, a member of the histone deacetylase family proteins. O.I. C.G. H.G.
11.6 99.3 13.6 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
11.5 99.3 20.7 At4g24810 828584 ABC1 family protein similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147) O.I. C.G. H.G.
11.5 99.3 13.7 At1g03055 838334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
11.4 99.3 15.4 At1g69720 843308 ho3 (HEME OXYGENASE 3) Encodes a member (HO3) of the heme oxygenase family. O.I. C.G. H.G.
11.3 99.3 24.0 At5g22390 832300 unknown protein F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
11.3 99.3 23.8 At1g18810 838463 phytochrome kinase substrate-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
11.2 99.2 56.6 At2g47490 819362 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV O.I. C.G. H.G.
11.2 99.2 51.1 At5g59750 836096 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP O.I. C.G. H.G.
11.1 99.2 184.2 At1g62180 842514 APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. O.I. C.G. H.G.
11.1 99.2 47.7 At3g17040 820961 HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107) It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. O.I. C.G. H.G.
11.1 99.2 20.4 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
11.0 99.2 49.8 At1g32540 840148 LOL1 (LSD ONE LIKE 1) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. O.I. C.G. H.G.
10.9 99.2 45.4 At3g02830 821230 ZFN1 (ZINC FINGER PROTEIN 1) Encodes a zinc finger protein. O.I. C.G. H.G.
10.9 99.2 22.4 At3g05340 819698 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
10.8 99.2 92.5 At1g06430 837154 FTSH8 encodes a FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
10.8 99.2 77.5 At1g60550 842350 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
10.8 99.2 76.1 At1g12250 837778 thylakoid lumenal protein-related F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPV O.I. C.G. H.G.
10.8 99.2 35.9 At3g10840 820253 hydrolase, alpha/beta fold family protein F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast envelope;BOMPFAV O.I. C.G. H.G.
10.7 99.2 175.9 At2g42690 818869 lipase, putative F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV O.I. C.G. H.G.
10.7 99.2 131.6 At3g54660 824631 GR (GLUTATHIONE REDUCTASE) Encodes glutathione reductase that is most likely localized in the chloroplast. O.I. C.G. H.G.
10.7 99.2 77.5 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
10.7 99.2 65.4 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
10.7 99.2 51.2 At5g28020 832872 CYSD2 (CYSTEINE SYNTHASE D2) Encodes cysteine synthase CysD2. O.I. C.G. H.G.
10.6 99.2 132.4 At1g18060 838386 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
10.4 99.2 68.2 At2g32160 817775 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
10.4 99.2 20.7 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM O.I. C.G. H.G.
10.2 99.2 38.7 At2g29360 817485 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
10.1 99.2 114.1 At1g44446 841029 CH1 (CHLORINA 1) Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22. O.I. C.G. H.G.
10.0 99.2 43.3 At1g71720 843502 S1 RNA-binding domain-containing protein F:RNA binding;P:unknown;C:chloroplast;BOPMAF O.I. C.G. H.G.
10.0 99.2 9.0 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
9.9 99.1 72.3 At1g12520 837808 ATCCS (COPPER CHAPERONE FOR SOD1) Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. O.I. C.G. H.G.
9.9 99.1 37.1 At4g04850 825822 KEA3 member of Putative potassium transporter family O.I. C.G. H.G.
9.8 99.1 238.1 At4g13770 827011 CYP83A1 (CYTOCHROME P450 83A1) Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis. O.I. C.G. H.G.
9.7 99.1 153.1 At1g16720 838243 HCF173 (high chlorophyll fluorescence phenotype 173) Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex. O.I. C.G. H.G.
9.6 99.1 94.1 At5g06980 830589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
9.6 99.1 68.3 At1g52590 841691 - F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP O.I. C.G. H.G.
9.6 99.1 38.8 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
241.1	100.0	78.1	At5g28030	832873	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
120.5	99.9	113.5	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
49.9	99.8	191.8	At4g03050	828104	AOP3	Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
45.9	99.8	43.0	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
40.5	99.8	59.0	At1g76110	843943	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP	O.I.	C.G.	H.G.
35.3	99.7	136.9	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
31.5	99.7	66.3	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
29.6	99.7	44.6	At1g80760	844415	NIP6	Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.	O.I.	C.G.	H.G.
28.0	99.7	37.8	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.9	99.7	163.9	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
24.0	99.6	89.4	At1g07010	837211	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV	O.I.	C.G.	H.G.
23.9	99.6	30.3	At5g20220	832144	zinc knuckle (CCHC-type) family protein	F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB	O.I.	C.G.	H.G.
23.6	99.6	199.0	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.6	99.6	48.6	At4g37560	829911	formamidase, putative / formamide amidohydrolase, putative	F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP	O.I.	C.G.	H.G.
23.2	99.6	93.1	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
23.1	99.6	142.1	At5g15950	831452	adenosylmethionine decarboxylase family protein	F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
22.6	99.6	257.1	At5g65730	836702	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO	O.I.	C.G.	H.G.
22.0	99.6	112.1	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
21.5	99.6	50.1	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
20.7	99.6	124.1	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
19.8	99.6	111.9	At3g01060	821278	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP	O.I.	C.G.	H.G.
18.6	99.5	175.1	At4g22570	828353	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1.	O.I.	C.G.	H.G.
18.4	99.5	29.1	At5g44530	834480	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BOPFAM	O.I.	C.G.	H.G.
17.4	99.5	27.2	At5g52030	835278	TraB protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP	O.I.	C.G.	H.G.
17.2	99.5	70.9	At1g70580	843395	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)	Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1	O.I.	C.G.	H.G.
16.7	99.5	73.8	At1g56120	842064	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;PMOBFVA	O.I.	C.G.	H.G.
16.1	99.5	98.5	At4g26860	828793	pyridoxal phosphate binding	F:pyridoxal phosphate binding;P:biological_process unknown;C:unknown;OBMFPA	O.I.	C.G.	H.G.
16.1	99.5	66.3	At1g62250	842522	unknown protein	F:unknown;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.1	99.5	49.2	At1g75100	843847	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	O.I.	C.G.	H.G.
16.1	99.5	43.8	At1g70610	843398	ATTAP1	member of TAP subfamily	O.I.	C.G.	H.G.
16.1	99.5	38.9	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
15.9	99.5	51.6	At5g54130	835500	-	-	O.I.	C.G.	H.G.
15.7	99.5	70.3	At3g47430	823897	PEX11B	member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.	O.I.	C.G.	H.G.
15.7	99.5	39.3	At1g19715	838560	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
15.6	99.5	115.0	At3g02870	821206	VTC4	Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.	O.I.	C.G.	H.G.
15.4	99.5	136.0	At1g64860	842794	SIGA (SIGMA FACTOR A)	Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme	O.I.	C.G.	H.G.
15.2	99.4	318.7	At5g49730	835036	ATFRO6 (FERRIC REDUCTION OXIDASE 6)	Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.	O.I.	C.G.	H.G.
15.2	99.4	284.9	At4g26850	828792	VTC2 (vitamin c defective 2)	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	O.I.	C.G.	H.G.
14.6	99.4	96.1	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
14.0	99.4	109.9	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
14.0	99.4	50.8	At3g27110	822330	peptidase M48 family protein	F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF	O.I.	C.G.	H.G.
13.7	99.4	66.6	At3g48200	823977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP	O.I.	C.G.	H.G.
13.7	99.4	57.1	At3g01550	821114	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA	O.I.	C.G.	H.G.
13.7	99.4	27.5	At1g73870	843723	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
13.5	99.4	43.3	At2g23420	816874	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	F:nicotinate phosphoribosyltransferase activity;P:pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage;C:cellular_component unknown;BMOAPF	O.I.	C.G.	H.G.
13.4	99.4	260.1	At5g67030	836838	ABA1 (ABA DEFICIENT 1)	Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.	O.I.	C.G.	H.G.
13.4	99.4	55.0	At4g37310	829886	CYP81H1	member of CYP81H	O.I.	C.G.	H.G.
13.3	99.4	10.7	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
13.2	99.4	70.6	At2g37240	818301	-	F:unknown;P:biological_process unknown;C:chloroplast;MPBOF	O.I.	C.G.	H.G.
13.1	99.4	179.6	At5g43850	834407	ARD4	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
12.9	99.3	127.8	At3g02020	821287	AK3 (ASPARTATE KINASE 3)	encodes a monofunctional aspartate kinase	O.I.	C.G.	H.G.
12.8	99.3	177.4	At1g65490	842861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.5	99.3	142.3	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
12.4	99.3	52.8	At5g48220	834875	indole-3-glycerol phosphate synthase, putative	F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP	O.I.	C.G.	H.G.
12.3	99.3	40.9	At3g19720	821509	ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5)	Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP�ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.	O.I.	C.G.	H.G.
12.3	99.3	31.7	At4g22200	828311	AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)	Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential.	O.I.	C.G.	H.G.
12.2	99.3	92.1	At1g66330	842950	senescence-associated family protein	F:unknown;P:senescence;C:unknown;PB	O.I.	C.G.	H.G.
12.0	99.3	150.2	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
11.9	99.3	135.4	At2g29650	817515	PHT4	Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.	O.I.	C.G.	H.G.
11.9	99.3	33.6	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
11.9	99.3	29.3	At2g38780	818460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM	O.I.	C.G.	H.G.
11.8	99.3	84.3	At3g12320	820411	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.8	99.3	49.4	At4g33470	829484	hda14 (histone deacetylase 14)	Encodes HDA14, a member of the histone deacetylase family proteins.	O.I.	C.G.	H.G.
11.6	99.3	13.6	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
11.5	99.3	20.7	At4g24810	828584	ABC1 family protein	similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	O.I.	C.G.	H.G.
11.5	99.3	13.7	At1g03055	838334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
11.4	99.3	15.4	At1g69720	843308	ho3 (HEME OXYGENASE 3)	Encodes a member (HO3) of the heme oxygenase family.	O.I.	C.G.	H.G.
11.3	99.3	24.0	At5g22390	832300	unknown protein	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
11.3	99.3	23.8	At1g18810	838463	phytochrome kinase substrate-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
11.2	99.2	56.6	At2g47490	819362	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV	O.I.	C.G.	H.G.
11.2	99.2	51.1	At5g59750	836096	riboflavin biosynthesis protein, putative	F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP	O.I.	C.G.	H.G.
11.1	99.2	184.2	At1g62180	842514	APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)	encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.	O.I.	C.G.	H.G.
11.1	99.2	47.7	At3g17040	820961	HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)	It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.	O.I.	C.G.	H.G.
11.1	99.2	20.4	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
11.0	99.2	49.8	At1g32540	840148	LOL1 (LSD ONE LIKE 1)	Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	O.I.	C.G.	H.G.
10.9	99.2	45.4	At3g02830	821230	ZFN1 (ZINC FINGER PROTEIN 1)	Encodes a zinc finger protein.	O.I.	C.G.	H.G.
10.9	99.2	22.4	At3g05340	819698	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
10.8	99.2	92.5	At1g06430	837154	FTSH8	encodes a FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
10.8	99.2	77.5	At1g60550	842350	ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)	F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
10.8	99.2	76.1	At1g12250	837778	thylakoid lumenal protein-related	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPV	O.I.	C.G.	H.G.
10.8	99.2	35.9	At3g10840	820253	hydrolase, alpha/beta fold family protein	F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast envelope;BOMPFAV	O.I.	C.G.	H.G.
10.7	99.2	175.9	At2g42690	818869	lipase, putative	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV	O.I.	C.G.	H.G.
10.7	99.2	131.6	At3g54660	824631	GR (GLUTATHIONE REDUCTASE)	Encodes glutathione reductase that is most likely localized in the chloroplast.	O.I.	C.G.	H.G.
10.7	99.2	77.5	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
10.7	99.2	65.4	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
10.7	99.2	51.2	At5g28020	832872	CYSD2 (CYSTEINE SYNTHASE D2)	Encodes cysteine synthase CysD2.	O.I.	C.G.	H.G.
10.6	99.2	132.4	At1g18060	838386	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
10.4	99.2	68.2	At2g32160	817775	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
10.4	99.2	20.7	At3g28080	822432	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
10.2	99.2	38.7	At2g29360	817485	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
10.1	99.2	114.1	At1g44446	841029	CH1 (CHLORINA 1)	Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.	O.I.	C.G.	H.G.
10.0	99.2	43.3	At1g71720	843502	S1 RNA-binding domain-containing protein	F:RNA binding;P:unknown;C:chloroplast;BOPMAF	O.I.	C.G.	H.G.
10.0	99.2	9.0	At1g01520	839337	myb family transcription factor	F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
9.9	99.1	72.3	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	O.I.	C.G.	H.G.
9.9	99.1	37.1	At4g04850	825822	KEA3	member of Putative potassium transporter family	O.I.	C.G.	H.G.
9.8	99.1	238.1	At4g13770	827011	CYP83A1 (CYTOCHROME P450 83A1)	Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.	O.I.	C.G.	H.G.
9.7	99.1	153.1	At1g16720	838243	HCF173 (high chlorophyll fluorescence phenotype 173)	Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.	O.I.	C.G.	H.G.
9.6	99.1	94.1	At5g06980	830589	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
9.6	99.1	68.3	At1g52590	841691	-	F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP	O.I.	C.G.	H.G.
9.6	99.1	38.8	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.

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GSM ID	GSM318332
Assay name	ML_35DAS_1
GSE experiment	GSE12676: Arabidopsis thaliana Ler developmental series

Microarray experiments to specifically-expressed genes

GSM ID GSM318332 Assay name ML_35DAS_1 GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series

GSM ID GSM318332

Assay name ML_35DAS_1

GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series