CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM318331

Assay name EL_14DAS_2

GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
50.2 99.8 82.1 At1g48100 841228 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA O.I. C.G. H.G.
41.3 99.8 95.5 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. O.I. C.G. H.G.
37.1 99.7 264.3 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
36.1 99.7 62.9 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
34.1 99.7 86.0 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
33.8 99.7 16.3 At4g16920 827400 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA O.I. C.G. H.G.
33.7 99.7 71.7 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
32.9 99.7 37.9 At2g36590 818232 ProT3 (PROLINE TRANSPORTER 3) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. O.I. C.G. H.G.
32.7 99.7 17.8 At5g60880 836209 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
32.2 99.7 83.1 At1g30520 839932 AAE14 (Acyl-Activating Enzyme 14) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal. O.I. C.G. H.G.
29.4 99.7 41.3 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF O.I. C.G. H.G.
28.1 99.7 44.9 At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. C.G. H.G.
27.5 99.7 14.9 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
25.9 99.7 14.6 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
25.0 99.6 77.0 At3g01550 821114 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA O.I. C.G. H.G.
25.0 99.6 61.3 At5g16715 831533 EMB2247 (embryo defective 2247) F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP O.I. C.G. H.G.
22.6 99.6 29.1 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
22.5 99.6 152.5 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
22.1 99.6 55.3 At2g23420 816874 NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) F:nicotinate phosphoribosyltransferase activity;P:pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage;C:cellular_component unknown;BMOAPF O.I. C.G. H.G.
21.6 99.6 15.7 At1g28010 839694 PGP14 (P-GLYCOPROTEIN 14) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
20.5 99.6 27.2 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
20.4 99.6 53.5 At5g10690 830933 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
20.2 99.6 13.2 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
20.1 99.6 81.7 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV O.I. C.G. H.G.
20.0 99.6 17.9 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
19.7 99.6 75.0 At2g47490 819362 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV O.I. C.G. H.G.
19.4 99.6 35.9 At5g57960 835907 GTP-binding family protein F:GTP binding;P:unknown;C:chloroplast;BOMAPF O.I. C.G. H.G.
19.0 99.5 128.9 At5g15950 831452 adenosylmethionine decarboxylase family protein F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
18.7 99.5 103.3 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
17.7 99.5 105.8 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
16.8 99.5 41.7 At2g30695 817620 - F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP O.I. C.G. H.G.
16.7 99.5 33.9 At4g20130 827759 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO O.I. C.G. H.G.
16.7 99.5 11.0 At2g39690 818552 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO O.I. C.G. H.G.
16.6 99.5 20.5 At5g28030 832873 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
16.4 99.5 90.5 At3g47295 823883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.0 99.5 39.9 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
15.6 99.5 91.1 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
15.5 99.5 18.1 At5g46880 834733 HB-7 (HOMEOBOX-7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOB O.I. C.G. H.G.
15.2 99.4 42.4 At1g64150 842719 unknown protein F:unknown;P:unknown;C:chloroplast, membrane;BOMFPA O.I. C.G. H.G.
15.1 99.4 42.5 At1g70610 843398 ATTAP1 member of TAP subfamily O.I. C.G. H.G.
15.1 99.4 36.1 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
14.9 99.4 94.1 At2g40300 818622 ATFER4 (ferritin 4) Encodes FERRITIN 4, AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. O.I. C.G. H.G.
14.7 99.4 160.0 At1g08520 837374 CHLD F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA O.I. C.G. H.G.
14.7 99.4 90.9 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
14.6 99.4 49.4 At1g21350 838734 antioxidant/ oxidoreductase F:oxidoreductase activity, antioxidant activity;P:unknown;C:chloroplast;OBPAM O.I. C.G. H.G.
14.6 99.4 24.2 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
14.5 99.4 65.1 At5g17670 831633 hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOP O.I. C.G. H.G.
14.5 99.4 31.5 At4g34830 829635 - F:unknown;P:unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
14.4 99.4 26.4 At4g38960 830051 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
14.1 99.4 82.9 At4g01800 827922 preprotein translocase secA subunit, putative F:protein binding, ATP binding;P:intracellular protein transport, protein targeting, protein import;C:chloroplast stroma, chloroplast, chloroplast envelope;OBPMA O.I. C.G. H.G.
14.1 99.4 64.4 At3g51870 824350 binding / transporter F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV O.I. C.G. H.G.
14.1 99.4 51.0 At4g19710 827715 bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. O.I. C.G. H.G.
14.1 99.4 34.8 At1g76110 843943 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP O.I. C.G. H.G.
14.1 99.4 19.3 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB O.I. C.G. H.G.
13.8 99.4 53.9 At1g56050 842056 GTP-binding protein-related F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP O.I. C.G. H.G.
13.8 99.4 51.2 At3g02830 821230 ZFN1 (ZINC FINGER PROTEIN 1) Encodes a zinc finger protein. O.I. C.G. H.G.
13.2 99.4 111.1 At3g14930 820722 HEME1 F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAP O.I. C.G. H.G.
13.2 99.4 17.7 At5g24000 832465 unknown protein F:unknown;P:unknown;C:chloroplast;BOPA O.I. C.G. H.G.
13.0 99.4 51.2 At5g66470 836779 GTP binding / RNA binding F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF O.I. C.G. H.G.
13.0 99.4 18.3 At1g72640 843596 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast;BPOMA O.I. C.G. H.G.
12.9 99.3 44.9 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.
12.8 99.3 84.3 At1g60550 842350 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
12.8 99.3 43.8 At1g75100 843847 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. O.I. C.G. H.G.
12.8 99.3 34.5 At4g18810 827615 binding / catalytic/ transcription repressor F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM O.I. C.G. H.G.
12.7 99.3 33.2 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP O.I. C.G. H.G.
12.4 99.3 25.3 At2g45270 819135 glycoprotease M22 family protein F:endopeptidase activity, metalloendopeptidase activity, zinc ion binding;P:proteolysis;C:unknown;OBMFAP O.I. C.G. H.G.
12.3 99.3 36.3 At3g03710 821181 RIF10 (resistant to inhibition with FSM 10) Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings. O.I. C.G. H.G.
12.3 99.3 24.0 At3g04650 819623 oxidoreductase F:oxidoreductase activity;P:unknown;C:chloroplast;OBPAMF O.I. C.G. H.G.
12.2 99.3 107.5 At4g24750 828577 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA O.I. C.G. H.G.
12.1 99.3 140.2 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
12.1 99.3 80.0 At1g12520 837808 ATCCS (COPPER CHAPERONE FOR SOD1) Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. O.I. C.G. H.G.
12.1 99.3 78.4 At4g39710 830126 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA O.I. C.G. H.G.
12.0 99.3 119.7 At5g64940 836618 ATATH13 Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins. O.I. C.G. H.G.
12.0 99.3 109.9 At4g25700 828675 BETA-OHASE 1 (BETA-HYDROXYLASE 1) Converts beta-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
12.0 99.3 94.4 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
12.0 99.3 53.0 At5g59750 836096 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP O.I. C.G. H.G.
12.0 99.3 43.7 At4g26555 828762 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFA O.I. C.G. H.G.
12.0 99.3 35.2 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA O.I. C.G. H.G.
12.0 99.3 14.1 At1g03055 838334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
11.9 99.3 140.4 At4g17560 827471 ribosomal protein L19 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF O.I. C.G. H.G.
11.9 99.3 33.5 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
11.8 99.3 51.2 At2g25840 817126 OVA4 (ovule abortion 4) F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAP O.I. C.G. H.G.
11.8 99.3 38.4 At3g49260 824087 iqd21 (IQ-domain 21) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
11.7 99.3 43.3 At1g73110 843642 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative F:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAM O.I. C.G. H.G.
11.7 99.3 18.9 At1g80080 844348 TMM (TOO MANY MOUTHS) Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. O.I. C.G. H.G.
11.5 99.3 33.7 At1g11870 837734 SRS (SERYL-TRNA SYNTHETASE) Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
11.4 99.3 11.0 At2g41340 818732 RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D) NRPE5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
11.3 99.3 107.3 At3g24430 822033 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101) encodes a MRP-like protein with a nucleotide-binding domain. O.I. C.G. H.G.
11.3 99.3 63.0 At5g05740 830458 EGY2 S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442�454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171�179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. O.I. C.G. H.G.
11.3 99.3 37.8 At1g14030 837964 ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO O.I. C.G. H.G.
11.2 99.2 24.5 At1g74040 843742 IMS1 (2-ISOPROPYLMALATE SYNTHASE 1) Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500). O.I. C.G. H.G.
11.1 99.2 11.7 At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. O.I. C.G. H.G.
11.0 99.2 35.9 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
10.9 99.2 88.4 At1g01790 837332 KEA1 (K EFFLUX ANTIPORTER 1) K efflux antiporter KEA1 O.I. C.G. H.G.
10.9 99.2 34.4 At2g37450 818322 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOA O.I. C.G. H.G.
10.9 99.2 26.6 At2g39190 818504 ATATH8 member of ATH subfamily O.I. C.G. H.G.
10.9 99.2 8.9 At4g31805 829309 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB O.I. C.G. H.G.
10.8 99.2 27.1 At5g53900 835472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
10.7 99.2 101.3 At3g63190 825494 RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPF O.I. C.G. H.G.
10.7 99.2 15.5 At4g15430 827214 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
50.2	99.8	82.1	At1g48100	841228	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA	O.I.	C.G.	H.G.
41.3	99.8	95.5	At1g12860	837843	SCRM2 (SCREAM 2)	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	O.I.	C.G.	H.G.
37.1	99.7	264.3	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
36.1	99.7	62.9	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
34.1	99.7	86.0	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
33.8	99.7	16.3	At4g16920	827400	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA	O.I.	C.G.	H.G.
33.7	99.7	71.7	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
32.9	99.7	37.9	At2g36590	818232	ProT3 (PROLINE TRANSPORTER 3)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	O.I.	C.G.	H.G.
32.7	99.7	17.8	At5g60880	836209	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
32.2	99.7	83.1	At1g30520	839932	AAE14 (Acyl-Activating Enzyme 14)	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	O.I.	C.G.	H.G.
29.4	99.7	41.3	At4g30720	829195	electron carrier/ oxidoreductase	F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
28.1	99.7	44.9	At2g38780	818460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM	O.I.	C.G.	H.G.
27.5	99.7	14.9	At1g01520	839337	myb family transcription factor	F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
25.9	99.7	14.6	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
25.0	99.6	77.0	At3g01550	821114	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA	O.I.	C.G.	H.G.
25.0	99.6	61.3	At5g16715	831533	EMB2247 (embryo defective 2247)	F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP	O.I.	C.G.	H.G.
22.6	99.6	29.1	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
22.5	99.6	152.5	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
22.1	99.6	55.3	At2g23420	816874	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	F:nicotinate phosphoribosyltransferase activity;P:pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage;C:cellular_component unknown;BMOAPF	O.I.	C.G.	H.G.
21.6	99.6	15.7	At1g28010	839694	PGP14 (P-GLYCOPROTEIN 14)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
20.5	99.6	27.2	At3g63510	825526	FAD binding / catalytic/ tRNA dihydrouridine synthase	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
20.4	99.6	53.5	At5g10690	830933	pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
20.2	99.6	13.2	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
20.1	99.6	81.7	At1g07010	837211	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV	O.I.	C.G.	H.G.
20.0	99.6	17.9	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
19.7	99.6	75.0	At2g47490	819362	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV	O.I.	C.G.	H.G.
19.4	99.6	35.9	At5g57960	835907	GTP-binding family protein	F:GTP binding;P:unknown;C:chloroplast;BOMAPF	O.I.	C.G.	H.G.
19.0	99.5	128.9	At5g15950	831452	adenosylmethionine decarboxylase family protein	F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
18.7	99.5	103.3	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
17.7	99.5	105.8	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
16.8	99.5	41.7	At2g30695	817620	-	F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP	O.I.	C.G.	H.G.
16.7	99.5	33.9	At4g20130	827759	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO	O.I.	C.G.	H.G.
16.7	99.5	11.0	At2g39690	818552	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO	O.I.	C.G.	H.G.
16.6	99.5	20.5	At5g28030	832873	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
16.4	99.5	90.5	At3g47295	823883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.0	99.5	39.9	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
15.6	99.5	91.1	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
15.5	99.5	18.1	At5g46880	834733	HB-7 (HOMEOBOX-7)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOB	O.I.	C.G.	H.G.
15.2	99.4	42.4	At1g64150	842719	unknown protein	F:unknown;P:unknown;C:chloroplast, membrane;BOMFPA	O.I.	C.G.	H.G.
15.1	99.4	42.5	At1g70610	843398	ATTAP1	member of TAP subfamily	O.I.	C.G.	H.G.
15.1	99.4	36.1	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
14.9	99.4	94.1	At2g40300	818622	ATFER4 (ferritin 4)	Encodes FERRITIN 4, AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.	O.I.	C.G.	H.G.
14.7	99.4	160.0	At1g08520	837374	CHLD	F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA	O.I.	C.G.	H.G.
14.7	99.4	90.9	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
14.6	99.4	49.4	At1g21350	838734	antioxidant/ oxidoreductase	F:oxidoreductase activity, antioxidant activity;P:unknown;C:chloroplast;OBPAM	O.I.	C.G.	H.G.
14.6	99.4	24.2	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
14.5	99.4	65.1	At5g17670	831633	hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOP	O.I.	C.G.	H.G.
14.5	99.4	31.5	At4g34830	829635	-	F:unknown;P:unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
14.4	99.4	26.4	At4g38960	830051	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
14.1	99.4	82.9	At4g01800	827922	preprotein translocase secA subunit, putative	F:protein binding, ATP binding;P:intracellular protein transport, protein targeting, protein import;C:chloroplast stroma, chloroplast, chloroplast envelope;OBPMA	O.I.	C.G.	H.G.
14.1	99.4	64.4	At3g51870	824350	binding / transporter	F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV	O.I.	C.G.	H.G.
14.1	99.4	51.0	At4g19710	827715	bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative	Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.	O.I.	C.G.	H.G.
14.1	99.4	34.8	At1g76110	843943	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP	O.I.	C.G.	H.G.
14.1	99.4	19.3	At5g55580	835652	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
13.8	99.4	53.9	At1g56050	842056	GTP-binding protein-related	F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP	O.I.	C.G.	H.G.
13.8	99.4	51.2	At3g02830	821230	ZFN1 (ZINC FINGER PROTEIN 1)	Encodes a zinc finger protein.	O.I.	C.G.	H.G.
13.2	99.4	111.1	At3g14930	820722	HEME1	F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAP	O.I.	C.G.	H.G.
13.2	99.4	17.7	At5g24000	832465	unknown protein	F:unknown;P:unknown;C:chloroplast;BOPA	O.I.	C.G.	H.G.
13.0	99.4	51.2	At5g66470	836779	GTP binding / RNA binding	F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF	O.I.	C.G.	H.G.
13.0	99.4	18.3	At1g72640	843596	binding / catalytic	F:binding, catalytic activity;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast;BPOMA	O.I.	C.G.	H.G.
12.9	99.3	44.9	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.
12.8	99.3	84.3	At1g60550	842350	ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)	F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
12.8	99.3	43.8	At1g75100	843847	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	O.I.	C.G.	H.G.
12.8	99.3	34.5	At4g18810	827615	binding / catalytic/ transcription repressor	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM	O.I.	C.G.	H.G.
12.7	99.3	33.2	At3g13180	820508	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
12.4	99.3	25.3	At2g45270	819135	glycoprotease M22 family protein	F:endopeptidase activity, metalloendopeptidase activity, zinc ion binding;P:proteolysis;C:unknown;OBMFAP	O.I.	C.G.	H.G.
12.3	99.3	36.3	At3g03710	821181	RIF10 (resistant to inhibition with FSM 10)	Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.	O.I.	C.G.	H.G.
12.3	99.3	24.0	At3g04650	819623	oxidoreductase	F:oxidoreductase activity;P:unknown;C:chloroplast;OBPAMF	O.I.	C.G.	H.G.
12.2	99.3	107.5	At4g24750	828577	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA	O.I.	C.G.	H.G.
12.1	99.3	140.2	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
12.1	99.3	80.0	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	O.I.	C.G.	H.G.
12.1	99.3	78.4	At4g39710	830126	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA	O.I.	C.G.	H.G.
12.0	99.3	119.7	At5g64940	836618	ATATH13	Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.	O.I.	C.G.	H.G.
12.0	99.3	109.9	At4g25700	828675	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	Converts beta-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
12.0	99.3	94.4	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
12.0	99.3	53.0	At5g59750	836096	riboflavin biosynthesis protein, putative	F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP	O.I.	C.G.	H.G.
12.0	99.3	43.7	At4g26555	828762	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFA	O.I.	C.G.	H.G.
12.0	99.3	35.2	At3g49140	824075	-	F:unknown;P:unknown;C:unknown;PBMOFVA	O.I.	C.G.	H.G.
12.0	99.3	14.1	At1g03055	838334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
11.9	99.3	140.4	At4g17560	827471	ribosomal protein L19 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF	O.I.	C.G.	H.G.
11.9	99.3	33.5	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
11.8	99.3	51.2	At2g25840	817126	OVA4 (ovule abortion 4)	F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAP	O.I.	C.G.	H.G.
11.8	99.3	38.4	At3g49260	824087	iqd21 (IQ-domain 21)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
11.7	99.3	43.3	At1g73110	843642	ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative	F:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAM	O.I.	C.G.	H.G.
11.7	99.3	18.9	At1g80080	844348	TMM (TOO MANY MOUTHS)	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.	O.I.	C.G.	H.G.
11.5	99.3	33.7	At1g11870	837734	SRS (SERYL-TRNA SYNTHETASE)	Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
11.4	99.3	11.0	At2g41340	818732	RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D)	NRPE5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
11.3	99.3	107.3	At3g24430	822033	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	encodes a MRP-like protein with a nucleotide-binding domain.	O.I.	C.G.	H.G.
11.3	99.3	63.0	At5g05740	830458	EGY2	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442�454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171�179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.	O.I.	C.G.	H.G.
11.3	99.3	37.8	At1g14030	837964	ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative	F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO	O.I.	C.G.	H.G.
11.2	99.2	24.5	At1g74040	843742	IMS1 (2-ISOPROPYLMALATE SYNTHASE 1)	Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500).	O.I.	C.G.	H.G.
11.1	99.2	11.7	At5g53210	835402	SPCH (SPEECHLESS)	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.	O.I.	C.G.	H.G.
11.0	99.2	35.9	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
10.9	99.2	88.4	At1g01790	837332	KEA1 (K EFFLUX ANTIPORTER 1)	K efflux antiporter KEA1	O.I.	C.G.	H.G.
10.9	99.2	34.4	At2g37450	818322	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOA	O.I.	C.G.	H.G.
10.9	99.2	26.6	At2g39190	818504	ATATH8	member of ATH subfamily	O.I.	C.G.	H.G.
10.9	99.2	8.9	At4g31805	829309	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB	O.I.	C.G.	H.G.
10.8	99.2	27.1	At5g53900	835472	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
10.7	99.2	101.3	At3g63190	825494	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPF	O.I.	C.G.	H.G.
10.7	99.2	15.5	At4g15430	827214	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.

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GSM ID	GSM318331
Assay name	EL_14DAS_2
GSE experiment	GSE12676: Arabidopsis thaliana Ler developmental series

Microarray experiments to specifically-expressed genes

GSM ID GSM318331 Assay name EL_14DAS_2 GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series

GSM ID GSM318331

Assay name EL_14DAS_2

GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series