Microarray experiments to specifically-expressed genes

GSM ID GSM317624
Assay name Apex_14DAS_2
GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
261.3100.088.1At2g14580815945ATPRB1pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.O.I.C.G.H.G.
56.699.872.0At5g59330836052lipid bindingF:lipid binding;P:lipid transport;C:endomembrane systemO.I.C.G.H.G.
43.299.853.9At1g80760844415NIP6Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.O.I.C.G.H.G.
42.099.863.0At4g33000829437CBL10 (CALCINEURIN B-LIKE 10)Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.O.I.C.G.H.G.
36.499.7261.9At1g01060839341LHY (LATE ELONGATED HYPOCOTYL)LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1O.I.C.G.H.G.
34.199.715.8At4g31805829309WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOBO.I.C.G.H.G.
32.299.726.1At3g63300825505phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;OMPBFO.I.C.G.H.G.
28.899.725.0At5g37130833685bindingF:binding;P:biological_process unknown;C:apoplast;OBAMFPO.I.C.G.H.G.
25.499.674.9At1g12860837843SCRM2 (SCREAM 2)Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.O.I.C.G.H.G.
24.099.646.9At5g13840831230FZR3 (FIZZY-RELATED 3)F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
23.799.6111.6At4g33260829462CDC20.2putative cdc20 protein (CDC20.2)O.I.C.G.H.G.
23.299.636.7At4g30720829195electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPFO.I.C.G.H.G.
20.799.631.7At4g38960830051zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
19.799.694.0At2g03090814838ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
19.799.651.4At1g48100841228glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVAO.I.C.G.H.G.
19.299.6129.7At5g15950831452adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
18.999.541.8At1g09420837465G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.O.I.C.G.H.G.
18.799.5130.2At5g47500834800pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
18.799.512.6At4g03205828029coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putativeF:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMPO.I.C.G.H.G.
17.999.597.6At2g41250818724haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPFO.I.C.G.H.G.
17.599.512.3At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFO.I.C.G.H.G.
16.699.594.9At3g61310825303DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
16.099.543.0At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
15.399.432.4At4g20130827759PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMOO.I.C.G.H.G.
15.099.467.4At1g14410838003WHY1 (WHIRLY 1)Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.O.I.C.G.H.G.
14.999.420.5At1g76310843964CYCB2core cell cycle genesO.I.C.G.H.G.
14.999.413.6At5g53210835402SPCH (SPEECHLESS)Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.O.I.C.G.H.G.
14.999.47.8At2g47920819404kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMAFO.I.C.G.H.G.
14.599.449.4At3g14190820636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.399.495.1At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsO.I.C.G.H.G.
14.299.455.7At3g55130824679ATWBC19 (White-Brown Complex homolog 19)Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.O.I.C.G.H.G.
14.299.422.6At3g63510825526FAD binding / catalytic/ tRNA dihydrouridine synthaseF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
14.199.438.2At2g30695817620-F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOPO.I.C.G.H.G.
13.899.410.7At1g11300837672ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
13.799.417.5At4g15430827214-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOO.I.C.G.H.G.
13.399.436.4At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
13.299.4180.8At4g30140829137GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
13.299.486.6At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
13.199.410.2At3g27650822387LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.099.4188.4At4g22490828344protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
12.899.384.8At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.O.I.C.G.H.G.
12.899.332.2At2g28350817382ARF10 (AUXIN RESPONSE FACTOR 10)Involved in root cap cell differentiation.O.I.C.G.H.G.
12.799.353.3At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
12.699.361.8At5g61420836263MYB28 (myb domain protein 28)Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.O.I.C.G.H.G.
12.699.342.0At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
12.699.330.1At2g38780818460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
12.499.3108.7At4g24750828577-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOAO.I.C.G.H.G.
12.499.311.9At2g31150817671ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanismF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVAO.I.C.G.H.G.
12.399.341.4At3g48500824009RNA bindingF:RNA binding;P:unknown;C:plastid chromosome, chloroplast, nucleoid;POVMFBO.I.C.G.H.G.
12.399.312.2At4g34650829617SQS2 (SQUALENE SYNTHASE 2)Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.O.I.C.G.H.G.
12.299.323.3At2g21150816650XCT (XAP5 CIRCADIAN TIMEKEEPER)XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized.O.I.C.G.H.G.
12.199.315.2At1g34245840324-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.899.331.9At3g13180820508NOL1/NOP2/sun family protein / antitermination NusB domain-containing proteinF:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAPO.I.C.G.H.G.
11.799.334.8At5g66230836755unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVO.I.C.G.H.G.
11.499.330.4At1g28710839771unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
11.499.321.8At1g03780839140targeting protein-relatedHomolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.O.I.C.G.H.G.
11.399.313.2At1g72670843599iqd8 (IQ-domain 8)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G. (TOO MANY MOUTHS)Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.O.I.C.G.H.G. unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G. (PALE CRESS)The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.O.I.C.G.H.G.
10.899.217.6At3g21300821684RNA methyltransferase family proteinF:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPVO.I.C.G.H.G.
10.899.210.3At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
10.799.230.2At4g18975827633pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.699.221.2At4g19240827664unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.219.7At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusO.I.C.G.H.G.
10.599.26.2At4g36470829799S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
10.399.217.8At1g80370844377CYCA2F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVBO.I.C.G.H.G.
10.399.29.4At2g33560817921spindle checkpoint protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G. (embryo defective 2746)F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFVO.I.C.G.H.G. (biotin auxotroph 1)Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.O.I.C.G.H.G. unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G. (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.O.I.C.G.H.G. (FE SUPEROXIDE DISMUTASE 2)Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.O.I.C.G.H.G., putativeF:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOFO.I.C.G.H.G. cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.O.I.C.G.H.G.
9.999.158.2At5g14660831318PDF1B (PEPTIDE DEFORMYLASE 1B)encodes a peptide deformylase-like proteinO.I.C.G.H.G.
9.999.134.7At2g34720818037NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
9.899.176.1At1g66430842961pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMFO.I.C.G.H.G.
9.899.131.6At1g02690839517IMPA-6 (IMPORTIN ALPHA ISOFORM 6)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.O.I.C.G.H.G.
9.899.130.4At4g00180827914YAB3 (YABBY3)YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.O.I.C.G.H.G.
9.799.122.2At2g26550817196HO2 (HEME OXYGENASE 2)encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin.O.I.C.G.H.G.
9.699.1124.6At2g47940819406DEGP2Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.O.I.C.G.H.G.
9.699.129.9At4g27050828813F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.599.121.5At2g26760817217CYCB1F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
9.599.16.4At3g15550820794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
9.499.175.2At2g33430817907DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;PO.I.C.G.H.G.
9.499.117.5At4g05190825867ATK5 (ARABIDOPSIS THALIANA KINESIN 5)ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.O.I.C.G.H.G.
9.399.134.0At2g25880817129AtAUR2 (AtAurora2)Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.O.I.C.G.H.G. (COPPER CHAPERONE FOR SOD1)Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.O.I.C.G.H.G. a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.O.I.C.G.H.G. (HOMEODOMAIN GLABROUS 2)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G. protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
9.199.1147.7At1g27540839645F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G. gyrase subunit A family proteinF:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPAO.I.C.G.H.G. (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.C.G.H.G. a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast.O.I.C.G.H.G.' nucleotidase family proteinF:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;MPBOO.I.C.G.H.G. (COTYLEDON VASCULAR PATTERN 2)Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.O.I.C.G.H.G.

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