CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM317624

Assay name Apex_14DAS_2

GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
261.3 100.0 88.1 At2g14580 815945 ATPRB1 pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression. O.I. C.G. H.G.
56.6 99.8 72.0 At5g59330 836052 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system O.I. C.G. H.G.
43.2 99.8 53.9 At1g80760 844415 NIP6 Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously. O.I. C.G. H.G.
42.0 99.8 63.0 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
36.4 99.7 261.9 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
34.1 99.7 15.8 At4g31805 829309 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB O.I. C.G. H.G.
32.2 99.7 26.1 At3g63300 825505 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF O.I. C.G. H.G.
28.8 99.7 25.0 At5g37130 833685 binding F:binding;P:biological_process unknown;C:apoplast;OBAMFP O.I. C.G. H.G.
25.4 99.6 74.9 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. O.I. C.G. H.G.
24.0 99.6 46.9 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
23.7 99.6 111.6 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. C.G. H.G.
23.2 99.6 36.7 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF O.I. C.G. H.G.
20.7 99.6 31.7 At4g38960 830051 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
19.7 99.6 94.0 At2g03090 814838 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
19.7 99.6 51.4 At1g48100 841228 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA O.I. C.G. H.G.
19.2 99.6 129.7 At5g15950 831452 adenosylmethionine decarboxylase family protein F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
18.9 99.5 41.8 At1g09420 837465 G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4) Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. O.I. C.G. H.G.
18.7 99.5 130.2 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
18.7 99.5 12.6 At4g03205 828029 coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP O.I. C.G. H.G.
17.9 99.5 97.6 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
17.5 99.5 12.3 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
17.1 99.5 24.2 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.6 99.5 94.9 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
16.0 99.5 43.0 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
15.3 99.4 32.4 At4g20130 827759 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO O.I. C.G. H.G.
15.0 99.4 67.4 At1g14410 838003 WHY1 (WHIRLY 1) Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. O.I. C.G. H.G.
14.9 99.4 20.5 At1g76310 843964 CYCB2 core cell cycle genes O.I. C.G. H.G.
14.9 99.4 13.6 At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. O.I. C.G. H.G.
14.9 99.4 7.8 At2g47920 819404 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMAF O.I. C.G. H.G.
14.5 99.4 49.4 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.3 99.4 95.1 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
14.2 99.4 55.7 At3g55130 824679 ATWBC19 (White-Brown Complex homolog 19) Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. O.I. C.G. H.G.
14.2 99.4 22.6 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
14.1 99.4 38.2 At2g30695 817620 - F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP O.I. C.G. H.G.
13.8 99.4 10.7 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
13.7 99.4 17.5 At4g15430 827214 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
13.3 99.4 36.4 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
13.2 99.4 180.8 At4g30140 829137 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
13.2 99.4 86.6 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
13.1 99.4 10.2 At3g27650 822387 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.0 99.4 188.4 At4g22490 828344 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
12.8 99.3 84.8 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
12.8 99.3 32.2 At2g28350 817382 ARF10 (AUXIN RESPONSE FACTOR 10) Involved in root cap cell differentiation. O.I. C.G. H.G.
12.7 99.3 53.3 At1g56430 842096 NAS4 (NICOTIANAMINE SYNTHASE 4) F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO O.I. C.G. H.G.
12.6 99.3 61.8 At5g61420 836263 MYB28 (myb domain protein 28) Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose. O.I. C.G. H.G.
12.6 99.3 42.0 At5g10690 830933 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
12.6 99.3 30.1 At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. C.G. H.G.
12.4 99.3 108.7 At4g24750 828577 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA O.I. C.G. H.G.
12.4 99.3 11.9 At2g31150 817671 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA O.I. C.G. H.G.
12.3 99.3 41.4 At3g48500 824009 RNA binding F:RNA binding;P:unknown;C:plastid chromosome, chloroplast, nucleoid;POVMFB O.I. C.G. H.G.
12.3 99.3 12.2 At4g34650 829617 SQS2 (SQUALENE SYNTHASE 2) Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. O.I. C.G. H.G.
12.2 99.3 23.3 At2g21150 816650 XCT (XAP5 CIRCADIAN TIMEKEEPER) XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized. O.I. C.G. H.G.
12.1 99.3 15.2 At1g34245 840324 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.8 99.3 31.9 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP O.I. C.G. H.G.
11.7 99.3 34.8 At5g66230 836755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV O.I. C.G. H.G.
11.4 99.3 30.4 At1g28710 839771 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
11.4 99.3 21.8 At1g03780 839140 targeting protein-related Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. O.I. C.G. H.G.
11.3 99.3 13.2 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
11.2 99.2 18.5 At1g80080 844348 TMM (TOO MANY MOUTHS) Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. O.I. C.G. H.G.
11.1 99.2 28.4 At1g17140 838284 tropomyosin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
11.0 99.2 27.9 At2g48120 819424 PAC (PALE CRESS) The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist. O.I. C.G. H.G.
10.8 99.2 17.6 At3g21300 821684 RNA methyltransferase family protein F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV O.I. C.G. H.G.
10.8 99.2 10.3 At5g60880 836209 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
10.7 99.2 30.2 At4g18975 827633 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.6 99.2 21.2 At4g19240 827664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.6 99.2 19.7 At4g00480 827965 myc-related transcription factor (MYC1) MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus O.I. C.G. H.G.
10.5 99.2 6.2 At4g36470 829799 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
10.3 99.2 17.8 At1g80370 844377 CYCA2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB O.I. C.G. H.G.
10.3 99.2 9.4 At2g33560 817921 spindle checkpoint protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
10.2 99.2 29.4 At5g63420 836461 emb2746 (embryo defective 2746) F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV O.I. C.G. H.G.
10.2 99.2 22.1 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. O.I. C.G. H.G.
10.2 99.2 13.2 At1g73320 843666 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
10.1 99.2 19.8 At2g29890 817539 VLN1 (VILLIN-LIKE 1) Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization. O.I. C.G. H.G.
10.0 99.2 43.2 At5g51100 835183 FSD2 (FE SUPEROXIDE DISMUTASE 2) Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. O.I. C.G. H.G.
10.0 99.2 16.7 At1g20590 838648 cyclin, putative F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOF O.I. C.G. H.G.
10.0 99.2 15.3 At1g15570 838127 CYCA2 A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues. O.I. C.G. H.G.
9.9 99.1 58.2 At5g14660 831318 PDF1B (PEPTIDE DEFORMYLASE 1B) encodes a peptide deformylase-like protein O.I. C.G. H.G.
9.9 99.1 34.7 At2g34720 818037 NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase;C:CCAAT-binding factor complex, nucleus;PMFO O.I. C.G. H.G.
9.8 99.1 76.1 At1g66430 842961 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMF O.I. C.G. H.G.
9.8 99.1 31.6 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. C.G. H.G.
9.8 99.1 30.4 At4g00180 827914 YAB3 (YABBY3) YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. O.I. C.G. H.G.
9.7 99.1 22.2 At2g26550 817196 HO2 (HEME OXYGENASE 2) encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin. O.I. C.G. H.G.
9.6 99.1 124.6 At2g47940 819406 DEGP2 Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. O.I. C.G. H.G.
9.6 99.1 29.9 At4g27050 828813 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.5 99.1 21.5 At2g26760 817217 CYCB1 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
9.5 99.1 6.4 At3g15550 820794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
9.4 99.1 75.2 At2g33430 817907 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;P O.I. C.G. H.G.
9.4 99.1 17.5 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. O.I. C.G. H.G.
9.3 99.1 34.0 At2g25880 817129 AtAUR2 (AtAurora2) Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. O.I. C.G. H.G.
9.2 99.1 69.6 At1g12520 837808 ATCCS (COPPER CHAPERONE FOR SOD1) Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. O.I. C.G. H.G.
9.2 99.1 51.7 At3g17840 821053 RLK902 Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown. O.I. C.G. H.G.
9.2 99.1 22.9 At1g05230 839256 HDG2 (HOMEODOMAIN GLABROUS 2) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
9.2 99.1 13.1 At3g26800 822294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.2 99.1 6.4 At4g03270 828000 CYCD6 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
9.1 99.1 147.7 At1g27540 839645 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.1 99.1 48.5 At3g10690 820238 DNA gyrase subunit A family protein F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA O.I. C.G. H.G.
9.1 99.1 41.4 At2g34640 818029 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. O.I. C.G. H.G.
9.1 99.1 35.6 At2g04530 814995 CPZ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast. O.I. C.G. H.G.
9.1 99.1 27.4 At5g48960 834954 5' nucleotidase family protein F:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;MPBO O.I. C.G. H.G.
9.0 99.1 7.9 At1g05470 837048 CVP2 (COTYLEDON VASCULAR PATTERN 2) Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
261.3	100.0	88.1	At2g14580	815945	ATPRB1	pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.	O.I.	C.G.	H.G.
56.6	99.8	72.0	At5g59330	836052	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system	O.I.	C.G.	H.G.
43.2	99.8	53.9	At1g80760	844415	NIP6	Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.	O.I.	C.G.	H.G.
42.0	99.8	63.0	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
36.4	99.7	261.9	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
34.1	99.7	15.8	At4g31805	829309	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB	O.I.	C.G.	H.G.
32.2	99.7	26.1	At3g63300	825505	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF	O.I.	C.G.	H.G.
28.8	99.7	25.0	At5g37130	833685	binding	F:binding;P:biological_process unknown;C:apoplast;OBAMFP	O.I.	C.G.	H.G.
25.4	99.6	74.9	At1g12860	837843	SCRM2 (SCREAM 2)	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	O.I.	C.G.	H.G.
24.0	99.6	46.9	At5g13840	831230	FZR3 (FIZZY-RELATED 3)	F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
23.7	99.6	111.6	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	O.I.	C.G.	H.G.
23.2	99.6	36.7	At4g30720	829195	electron carrier/ oxidoreductase	F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
20.7	99.6	31.7	At4g38960	830051	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
19.7	99.6	94.0	At2g03090	814838	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
19.7	99.6	51.4	At1g48100	841228	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA	O.I.	C.G.	H.G.
19.2	99.6	129.7	At5g15950	831452	adenosylmethionine decarboxylase family protein	F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
18.9	99.5	41.8	At1g09420	837465	G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)	Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.	O.I.	C.G.	H.G.
18.7	99.5	130.2	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
18.7	99.5	12.6	At4g03205	828029	coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative	F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP	O.I.	C.G.	H.G.
17.9	99.5	97.6	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
17.5	99.5	12.3	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
17.1	99.5	24.2	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.6	99.5	94.9	At3g61310	825303	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
16.0	99.5	43.0	At3g17680	821035	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
15.3	99.4	32.4	At4g20130	827759	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO	O.I.	C.G.	H.G.
15.0	99.4	67.4	At1g14410	838003	WHY1 (WHIRLY 1)	Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.	O.I.	C.G.	H.G.
14.9	99.4	20.5	At1g76310	843964	CYCB2	core cell cycle genes	O.I.	C.G.	H.G.
14.9	99.4	13.6	At5g53210	835402	SPCH (SPEECHLESS)	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.	O.I.	C.G.	H.G.
14.9	99.4	7.8	At2g47920	819404	kinase interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMAF	O.I.	C.G.	H.G.
14.5	99.4	49.4	At3g14190	820636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.3	99.4	95.1	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
14.2	99.4	55.7	At3g55130	824679	ATWBC19 (White-Brown Complex homolog 19)	Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.	O.I.	C.G.	H.G.
14.2	99.4	22.6	At3g63510	825526	FAD binding / catalytic/ tRNA dihydrouridine synthase	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
14.1	99.4	38.2	At2g30695	817620	-	F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP	O.I.	C.G.	H.G.
13.8	99.4	10.7	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
13.7	99.4	17.5	At4g15430	827214	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
13.3	99.4	36.4	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
13.2	99.4	180.8	At4g30140	829137	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
13.2	99.4	86.6	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
13.1	99.4	10.2	At3g27650	822387	LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.0	99.4	188.4	At4g22490	828344	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
12.8	99.3	84.8	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
12.8	99.3	32.2	At2g28350	817382	ARF10 (AUXIN RESPONSE FACTOR 10)	Involved in root cap cell differentiation.	O.I.	C.G.	H.G.
12.7	99.3	53.3	At1g56430	842096	NAS4 (NICOTIANAMINE SYNTHASE 4)	F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO	O.I.	C.G.	H.G.
12.6	99.3	61.8	At5g61420	836263	MYB28 (myb domain protein 28)	Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.	O.I.	C.G.	H.G.
12.6	99.3	42.0	At5g10690	830933	pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
12.6	99.3	30.1	At2g38780	818460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM	O.I.	C.G.	H.G.
12.4	99.3	108.7	At4g24750	828577	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA	O.I.	C.G.	H.G.
12.4	99.3	11.9	At2g31150	817671	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA	O.I.	C.G.	H.G.
12.3	99.3	41.4	At3g48500	824009	RNA binding	F:RNA binding;P:unknown;C:plastid chromosome, chloroplast, nucleoid;POVMFB	O.I.	C.G.	H.G.
12.3	99.3	12.2	At4g34650	829617	SQS2 (SQUALENE SYNTHASE 2)	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	O.I.	C.G.	H.G.
12.2	99.3	23.3	At2g21150	816650	XCT (XAP5 CIRCADIAN TIMEKEEPER)	XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized.	O.I.	C.G.	H.G.
12.1	99.3	15.2	At1g34245	840324	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.8	99.3	31.9	At3g13180	820508	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
11.7	99.3	34.8	At5g66230	836755	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
11.4	99.3	30.4	At1g28710	839771	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
11.4	99.3	21.8	At1g03780	839140	targeting protein-related	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	O.I.	C.G.	H.G.
11.3	99.3	13.2	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
11.2	99.2	18.5	At1g80080	844348	TMM (TOO MANY MOUTHS)	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.	O.I.	C.G.	H.G.
11.1	99.2	28.4	At1g17140	838284	tropomyosin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
11.0	99.2	27.9	At2g48120	819424	PAC (PALE CRESS)	The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.	O.I.	C.G.	H.G.
10.8	99.2	17.6	At3g21300	821684	RNA methyltransferase family protein	F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV	O.I.	C.G.	H.G.
10.8	99.2	10.3	At5g60880	836209	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
10.7	99.2	30.2	At4g18975	827633	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.6	99.2	21.2	At4g19240	827664	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.6	99.2	19.7	At4g00480	827965	myc-related transcription factor (MYC1)	MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	O.I.	C.G.	H.G.
10.5	99.2	6.2	At4g36470	829799	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
10.3	99.2	17.8	At1g80370	844377	CYCA2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB	O.I.	C.G.	H.G.
10.3	99.2	9.4	At2g33560	817921	spindle checkpoint protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
10.2	99.2	29.4	At5g63420	836461	emb2746 (embryo defective 2746)	F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV	O.I.	C.G.	H.G.
10.2	99.2	22.1	At5g57590	835863	BIO1 (biotin auxotroph 1)	Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.	O.I.	C.G.	H.G.
10.2	99.2	13.2	At1g73320	843666	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
10.1	99.2	19.8	At2g29890	817539	VLN1 (VILLIN-LIKE 1)	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	O.I.	C.G.	H.G.
10.0	99.2	43.2	At5g51100	835183	FSD2 (FE SUPEROXIDE DISMUTASE 2)	Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	O.I.	C.G.	H.G.
10.0	99.2	16.7	At1g20590	838648	cyclin, putative	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOF	O.I.	C.G.	H.G.
10.0	99.2	15.3	At1g15570	838127	CYCA2	A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.	O.I.	C.G.	H.G.
9.9	99.1	58.2	At5g14660	831318	PDF1B (PEPTIDE DEFORMYLASE 1B)	encodes a peptide deformylase-like protein	O.I.	C.G.	H.G.
9.9	99.1	34.7	At2g34720	818037	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase;C:CCAAT-binding factor complex, nucleus;PMFO	O.I.	C.G.	H.G.
9.8	99.1	76.1	At1g66430	842961	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMF	O.I.	C.G.	H.G.
9.8	99.1	31.6	At1g02690	839517	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	C.G.	H.G.
9.8	99.1	30.4	At4g00180	827914	YAB3 (YABBY3)	YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.	O.I.	C.G.	H.G.
9.7	99.1	22.2	At2g26550	817196	HO2 (HEME OXYGENASE 2)	encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin.	O.I.	C.G.	H.G.
9.6	99.1	124.6	At2g47940	819406	DEGP2	Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.	O.I.	C.G.	H.G.
9.6	99.1	29.9	At4g27050	828813	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.5	99.1	21.5	At2g26760	817217	CYCB1	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
9.5	99.1	6.4	At3g15550	820794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
9.4	99.1	75.2	At2g33430	817907	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;P	O.I.	C.G.	H.G.
9.4	99.1	17.5	At4g05190	825867	ATK5 (ARABIDOPSIS THALIANA KINESIN 5)	ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.	O.I.	C.G.	H.G.
9.3	99.1	34.0	At2g25880	817129	AtAUR2 (AtAurora2)	Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.	O.I.	C.G.	H.G.
9.2	99.1	69.6	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	O.I.	C.G.	H.G.
9.2	99.1	51.7	At3g17840	821053	RLK902	Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.	O.I.	C.G.	H.G.
9.2	99.1	22.9	At1g05230	839256	HDG2 (HOMEODOMAIN GLABROUS 2)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
9.2	99.1	13.1	At3g26800	822294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.2	99.1	6.4	At4g03270	828000	CYCD6	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
9.1	99.1	147.7	At1g27540	839645	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.1	99.1	48.5	At3g10690	820238	DNA gyrase subunit A family protein	F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA	O.I.	C.G.	H.G.
9.1	99.1	41.4	At2g34640	818029	PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	O.I.	C.G.	H.G.
9.1	99.1	35.6	At2g04530	814995	CPZ	Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast.	O.I.	C.G.	H.G.
9.1	99.1	27.4	At5g48960	834954	5' nucleotidase family protein	F:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;MPBO	O.I.	C.G.	H.G.
9.0	99.1	7.9	At1g05470	837048	CVP2 (COTYLEDON VASCULAR PATTERN 2)	Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.	O.I.	C.G.	H.G.

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GSM ID	GSM317624
Assay name	Apex_14DAS_2
GSE experiment	GSE12676: Arabidopsis thaliana Ler developmental series

Microarray experiments to specifically-expressed genes

GSM ID GSM317624 Assay name Apex_14DAS_2 GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series

GSM ID GSM317624

Assay name Apex_14DAS_2

GSE experiment GSE12676: Arabidopsis thaliana Ler developmental series