Microarray experiments to specifically-expressed genes

GSM ID GSM311296
Assay name Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2
GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2219.9100.0399.1At2g23580816890MES4 (METHYL ESTERASE 4)Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
1983.8100.0286.7At2g23550816887MES6 (METHYL ESTERASE 6)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
1911.4100.0323.5At3g14760820704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
1625.6100.0434.3At1g02590839372aldehyde oxidase, putativeF:electron carrier activity, oxidoreductase activity, aldehyde oxidase activity;P:biological_process unknown;C:cellular_component unknown;MOBPFO.I.C.G.H.G.
1464.8100.0150.8At1g205008386384-coumarate-CoA ligaseF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
1408.0100.0344.3At1g09550837481pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
1385.9100.0487.8At5g60630836184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
900.1100.0339.9At4g11180826720disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
775.2100.0462.5At5g62150836335peptidoglycan-binding LysM domain-containing proteinF:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;PO.I.C.G.H.G.
737.2100.0620.3At1g53500841785MUM4 (MUCILAGE-MODIFIED 4)encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development.O.I.C.G.H.G.
724.6100.070.4At5g39130833906germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
689.4100.073.1At5g45770834616AtRLP55 (Receptor Like Protein 55)F:protein binding;P:unknown;C:unknown;PMBOFAVO.I.C.G.H.G.
681.2100.0431.6At1g62070842503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFO.I.C.G.H.G.
663.7100.0223.1At1g19970838586ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFO.I.C.G.H.G.
624.8100.0419.2At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.O.I.C.G.H.G.
593.0100.01202.8At1g62000842495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
527.6100.0857.6At5g58930836010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMO.I.C.G.H.G.
507.8100.038.4At1g78390844175NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.O.I.C.G.H.G.
500.2100.0627.7At2g077113768480-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
497.2100.054.0At4g24030828503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
493.8100.067.5At4g20820827830FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:unknown;FBPOAMO.I.C.G.H.G.
492.1100.0166.1At5g54400835528methyltransferaseF:methyltransferase activity;P:metabolic process;C:plasma membrane;BOAFPMO.I.C.G.H.G.
479.4100.0300.0At1g23200838928pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOMO.I.C.G.H.G.
470.9100.0204.1At1g711708434576-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
464.5100.0123.9At1g05280837026fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
435.2100.063.6At1g63300842636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAVO.I.C.G.H.G.
434.4100.0569.9At4g28365828952plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFMO.I.C.G.H.G.
430.9100.040.7At2g23570816889MES19 (METHYL ESTERASE 19)Encodes a protein with similarity to SABP2, a methyl salicylate esterase from tobacco. However, this protein is truncated and lacks one of the residues of the predicted catalytic triad, suggesting that it does not have this enzymatic activity.O.I.C.G.H.G.
422.4100.0311.5At5g50750835147RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)reversibly glycosylated polypeptide RGP-4 (RGP4)O.I.C.G.H.G.
408.3100.0106.7At5g47150834761YDG/SRA domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
391.8100.087.5At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
382.6100.0440.3At1g30530839933UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1)The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetinO.I.C.G.H.G.
378.4100.0202.3At2g35290818096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
364.7100.0147.6At4g37050829859PLP4 (PATATIN-LIKE PROTEIN 4)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
361.0100.0178.4At1g49580841382calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVAO.I.C.G.H.G.
342.6100.0142.4At5g24910832560CYP714A1member of CYP714AO.I.C.G.H.G.
332.1100.0236.7At1g62990842602KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.O.I.C.G.H.G.
314.0100.042.2At1g62900842591O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
309.5100.0510.1At3g234503768908unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane systemO.I.C.G.H.G.
305.2100.0125.5At4g35840829738zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
297.7100.074.1At5g61370836258pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMAO.I.C.G.H.G.
297.1100.091.7At1g34580840362monosaccharide transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.C.G.H.G.
287.8100.0181.6At2g24240816958potassium channel tetramerisation domain-containing proteinF:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPOFO.I.C.G.H.G.
276.4100.01302.5At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
272.0100.0349.2At5g59845836106gibberellin-regulated family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
271.7100.054.2At2g47750819387GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMFO.I.C.G.H.G.
261.0100.0133.4At1g79840844323GL2 (GLABRA 2)Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.O.I.C.G.H.G.
259.5100.031.8At5g52500835326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
243.5100.036.9At1g28590839759lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
241.6100.0638.9At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
241.5100.0136.4At1g11590837702pectin methylesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMO.I.C.G.H.G.
240.6100.032.5At3g49380824100iqd15 (IQ-domain 15)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
238.4100.082.8At2g25220817060ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
231.6100.079.8At4g03930825703enzyme inhibitor/ pectinesteraseF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
214.2100.0152.5At1g21140838710nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAO.I.C.G.H.G.
213.8100.031.7At3g24220822008NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6)A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.O.I.C.G.H.G.
213.5100.0236.6At2g07687815364cytochrome c oxidase subunit 3F:cytochrome-c oxidase activity;P:mitochondrial electron transport, cytochrome c to oxygen;C:membrane;MOBPFAO.I.C.G.H.G.
212.2100.040.8At1g28650839765lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
207.3100.0170.6At5g15180831370peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
201.5100.051.8At1g72220843554zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
193.9100.092.3At1g21070838703transporter-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
193.7100.081.8At1g09540837480MYB61 (MYB DOMAIN PROTEIN 61)Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.O.I.C.G.H.G.
182.9100.0336.3At1g29050839779unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
172.6100.0394.5At2g38900818474serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
168.5100.0158.6At5g47330834780palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFOO.I.C.G.H.G.
165.6100.063.9At3g50620824225nodulation protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
165.3100.037.2At2g02580814788CYP71B9member of CYP71BO.I.C.G.H.G.
164.7100.060.5At3g12020820376kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAVO.I.C.G.H.G.
158.199.996.8At5g50360835103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
152.299.941.5At4g09820826571TT8 (TRANSPARENT TESTA 8)TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.O.I.C.G.H.G.
150.099.994.8At2g25540817092CESA10 (CELLULOSE SYNTHASE 10)cellulose synthaseO.I.C.G.H.G.
149.099.928.4At1g28170839711sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFO.I.C.G.H.G.
147.399.9155.6At2g22900816821galactosyl transferase GMA12/MNN10 family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi apparatus;PFOVO.I.C.G.H.G.
146.599.989.7At4g00820828002iqd17 (IQ-domain 17)F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVBO.I.C.G.H.G.
145.499.926.1At3g01175820400-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
144.399.9102.6At2g22620816793lyaseF:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBOO.I.C.G.H.G.
144.099.952.3At1g02720839475GATL5 (GALACTURONOSYLTRANSFERASE 5)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
143.899.9116.0At1g11170837658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
142.899.9134.7At5g15740831430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
141.299.9129.3At1g26930839583kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFAO.I.C.G.H.G.
139.599.9169.4At2g42830818883SHP2 (SHATTERPROOF 2)AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).O.I.C.G.H.G.
138.799.9255.6At2g18440816358GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15)Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product.O.I.C.G.H.G.
137.899.946.2At2g35585818124unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
137.699.928.9At1g09155837435AtPP2-B15 (Phloem protein 2-B15)F:carbohydrate binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
137.499.9139.3At1g21790838783-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOO.I.C.G.H.G.
135.399.9141.0At2g16890816190UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PO.I.C.G.H.G.
127.299.9341.0At4g37520829907peroxidase 50 (PER50) (P50) (PRXR2)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOMO.I.C.G.H.G.
125.799.959.6At2g28250817371NCRKF:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVAO.I.C.G.H.G.
123.399.9606.3At2g07671815343H+-transporting two-sector ATPase, C subunit family proteinF:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFPO.I.C.G.H.G.
122.399.9166.2At4g37310829886CYP81H1member of CYP81HO.I.C.G.H.G.
122.399.937.1At1g14970838062unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
121.199.9407.6At2g07698815374ATP synthase alpha chain, mitochondrial, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAFO.I.C.G.H.G.
121.199.9162.5At5g04760830354myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFO.I.C.G.H.G.
119.199.9151.2At3g14720820700ATMPK19member of MAP KinaseO.I.C.G.H.G.
118.699.940.6At3g06840819868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
116.799.972.2At5g23680832433sterile alpha motif (SAM) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVO.I.C.G.H.G.
115.399.9196.2At1g44810841045transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
114.999.9106.2At5g58970836014ATUCP2 (UNCOUPLING PROTEIN 2)uncoupling proteinO.I.C.G.H.G.
113.899.9129.6At2g27920817336SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
112.799.983.6At3g48580824018xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOAO.I.C.G.H.G.



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