CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM311294

Assay name Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1242.5 100.0 263.2 At1g74055 843745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
1126.4 100.0 349.0 At5g24580 832529 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
1051.1 100.0 155.2 At1g77660 844102 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF O.I. C.G. H.G.
1032.2 100.0 358.9 At5g56300 835729 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. O.I. C.G. H.G.
795.2 100.0 73.7 At5g39130 833906 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
766.9 100.0 130.6 At1g68170 843145 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;PBOAM O.I. C.G. H.G.
734.0 100.0 200.1 At3g14780 820706 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV O.I. C.G. H.G.
726.5 100.0 95.2 At4g16790 827385 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA O.I. C.G. H.G.
725.6 100.0 142.3 At5g47150 834761 YDG/SRA domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
564.0 100.0 72.4 At2g33350 817898 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA O.I. C.G. H.G.
546.8 100.0 180.0 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA O.I. C.G. H.G.
499.0 100.0 589.2 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
483.5 100.0 130.3 At3g21830 821737 ASK8 (ARABIDOPSIS SKP1-LIKE 8) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
427.1 100.0 222.6 At1g02590 839372 aldehyde oxidase, putative F:electron carrier activity, oxidoreductase activity, aldehyde oxidase activity;P:biological_process unknown;C:cellular_component unknown;MOBPF O.I. C.G. H.G.
422.0 100.0 62.5 At4g34320 829582 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PBOM O.I. C.G. H.G.
419.3 100.0 158.2 At4g37050 829859 PLP4 (PATATIN-LIKE PROTEIN 4) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
418.9 100.0 410.0 At3g10590 820227 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
393.5 100.0 163.3 At3g50550 824219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
389.7 100.0 93.8 At3g61900 825363 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
389.3 100.0 311.6 At3g04280 819583 ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators. O.I. C.G. H.G.
371.2 100.0 276.3 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
366.2 100.0 111.1 At4g24050 828505 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
348.8 100.0 261.2 At3g57390 824906 AGL18 encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. O.I. C.G. H.G.
338.0 100.0 148.9 At4g00270 827164 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM O.I. C.G. H.G.
334.2 100.0 682.6 At5g58930 836010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFM O.I. C.G. H.G.
326.2 100.0 64.6 At2g42860 818886 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV O.I. C.G. H.G.
319.0 100.0 58.7 At2g47750 819387 GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9) F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMF O.I. C.G. H.G.
309.5 100.0 191.4 At1g26930 839583 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA O.I. C.G. H.G.
309.1 100.0 55.0 At4g29620 829083 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
307.6 100.0 492.2 At2g07711 3768480 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
305.6 100.0 397.0 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
301.8 100.0 128.1 At3g02140 821182 TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation. O.I. C.G. H.G.
295.2 100.0 122.5 At5g51810 835256 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. O.I. C.G. H.G.
293.3 100.0 313.0 At1g44810 841045 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
281.9 100.0 271.9 At2g07687 815364 cytochrome c oxidase subunit 3 F:cytochrome-c oxidase activity;P:mitochondrial electron transport, cytochrome c to oxygen;C:membrane;MOBPFA O.I. C.G. H.G.
281.3 100.0 156.4 At4g37180 829872 myb family transcription factor myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen O.I. C.G. H.G.
274.6 100.0 277.9 At5g48100 834862 TT10 (TRANSPARENT TESTA 10) Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. O.I. C.G. H.G.
267.5 100.0 138.8 At3g47120 823865 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA O.I. C.G. H.G.
256.5 100.0 44.9 At4g29580 829079 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPM O.I. C.G. H.G.
250.0 100.0 243.4 At3g09980 820159 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
246.9 100.0 233.0 At5g40980 834100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
246.2 100.0 96.7 At1g26450 839186 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA O.I. C.G. H.G.
240.2 100.0 122.6 At5g61480 836269 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
238.5 100.0 56.3 At5g47920 834843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
233.2 100.0 198.3 At1g62990 842602 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7) Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46. O.I. C.G. H.G.
229.1 100.0 149.3 At2g42620 818862 MAX2 (MORE AXILLARY BRANCHES 2) The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. Involved in positive regulation of light responses. O.I. C.G. H.G.
227.5 100.0 83.3 At1g24735 839082 O-methyltransferase F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA O.I. C.G. H.G.
222.4 100.0 79.8 At3g13780 820588 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
221.7 100.0 274.0 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA O.I. C.G. H.G.
219.4 100.0 139.1 At2g02230 814754 AtPP2-B1 (Phloem protein 2-B1) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
211.4 100.0 234.4 At5g50790 835151 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
211.1 100.0 57.1 At4g27420 828850 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMFAPV O.I. C.G. H.G.
208.8 100.0 95.4 At3g21840 821738 ASK7 (ARABIDOPSIS SKP1-LIKE 7) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV O.I. C.G. H.G.
206.1 100.0 201.3 At1g61090 842401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
205.4 100.0 85.1 At3g25400 822124 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
203.2 100.0 24.9 At1g73850 843721 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV O.I. C.G. H.G.
199.0 100.0 134.2 At5g49320 834992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
197.4 100.0 147.3 At3g07980 819989 MAPKKK6 MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential. O.I. C.G. H.G.
196.6 100.0 108.9 At3g14570 820683 ATGSL04 (glucan synthase-like 4) encodes a protein similar to callose synthase O.I. C.G. H.G.
194.7 100.0 75.9 At5g40140 834011 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex, chloroplast;PMFOB O.I. C.G. H.G.
193.6 100.0 221.7 At3g14560 820682 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
193.5 100.0 179.1 At2g39510 818536 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
192.2 100.0 153.8 At3g21420 821696 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
190.5 100.0 133.5 At4g40010 830162 SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. O.I. C.G. H.G.
189.0 100.0 228.7 At5g19900 832112 PRLI-interacting factor, putative F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA O.I. C.G. H.G.
187.9 100.0 323.6 At2g46960 819310 CYP709B1 member of CYP709B O.I. C.G. H.G.
186.1 100.0 88.6 At3g59100 825079 ATGSL11 (glucan synthase-like 11) encodes a protein similar to callose synthase O.I. C.G. H.G.
182.5 100.0 133.3 At2g30080 817559 ZIP6 member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess. O.I. C.G. H.G.
181.2 100.0 129.9 At4g36920 829845 AP2 (APETALA 2) Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner. O.I. C.G. H.G.
180.6 100.0 193.4 At1g52880 841721 NAM (NO APICAL MERISTEM) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. O.I. C.G. H.G.
180.3 100.0 206.9 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
179.8 100.0 64.9 At5g25580 832633 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
174.3 100.0 222.0 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
174.1 100.0 410.7 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA O.I. C.G. H.G.
172.6 100.0 139.9 At5g25220 832593 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia O.I. C.G. H.G.
172.2 100.0 56.2 At2g30960 817647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV O.I. C.G. H.G.
170.4 100.0 712.7 At2g07671 815343 H+-transporting two-sector ATPase, C subunit family protein F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP O.I. C.G. H.G.
169.8 100.0 23.3 At2g27240 817266 unknown protein F:unknown;P:biological_process unknown;C:unknown;PBOF O.I. C.G. H.G.
164.5 100.0 58.3 At3g54390 824605 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBFOM O.I. C.G. H.G.
163.1 99.9 54.7 At1g28520 839752 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
162.8 99.9 132.7 At5g11390 831010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
158.0 99.9 343.7 At4g28365 828952 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFM O.I. C.G. H.G.
155.7 99.9 92.3 At4g39780 830136 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
155.5 99.9 297.3 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
155.3 99.9 139.1 At5g25060 832577 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA O.I. C.G. H.G.
149.1 99.9 240.5 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. O.I. C.G. H.G.
148.1 99.9 450.8 At2g07698 815374 ATP synthase alpha chain, mitochondrial, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF O.I. C.G. H.G.
146.5 99.9 162.1 At2g33480 817913 ANAC041 (Arabidopsis NAC domain containing protein 41) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
145.4 99.9 64.3 At2g46410 819249 CPC (CAPRICE) Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. O.I. C.G. H.G.
144.3 99.9 101.4 At3g54950 824660 PLA IIIA (PATATIN-LIKE PROTEIN 6) F:unknown;P:response to other organism;C:unknown;PBOFM O.I. C.G. H.G.
143.6 99.9 74.9 At4g32350 829369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
141.4 99.9 145.0 At3g09770 820135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;MPOFVBA O.I. C.G. H.G.
140.0 99.9 343.1 At3g23450 3768908 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system O.I. C.G. H.G.
136.3 99.9 65.9 At2g44730 819080 transcription factor F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOBFV O.I. C.G. H.G.
135.9 99.9 96.7 At1g01725 839271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
135.8 99.9 58.7 At5g40970 834099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
135.3 99.9 153.6 At2g11890 815664 adenylate cyclase adenylate cyclase O.I. C.G. H.G.
134.6 99.9 81.9 At3g02400 821210 forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOFBPVA O.I. C.G. H.G.
134.5 99.9 65.7 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
134.3 99.9 14.9 At1g62670 842564 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1242.5	100.0	263.2	At1g74055	843745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
1126.4	100.0	349.0	At5g24580	832529	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
1051.1	100.0	155.2	At1g77660	844102	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF	O.I.	C.G.	H.G.
1032.2	100.0	358.9	At5g56300	835729	GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)	A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.	O.I.	C.G.	H.G.
795.2	100.0	73.7	At5g39130	833906	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
766.9	100.0	130.6	At1g68170	843145	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
734.0	100.0	200.1	At3g14780	820706	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV	O.I.	C.G.	H.G.
726.5	100.0	95.2	At4g16790	827385	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
725.6	100.0	142.3	At5g47150	834761	YDG/SRA domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
564.0	100.0	72.4	At2g33350	817898	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA	O.I.	C.G.	H.G.
546.8	100.0	180.0	At5g17980	831665	C2 domain-containing protein	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA	O.I.	C.G.	H.G.
499.0	100.0	589.2	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
483.5	100.0	130.3	At3g21830	821737	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
427.1	100.0	222.6	At1g02590	839372	aldehyde oxidase, putative	F:electron carrier activity, oxidoreductase activity, aldehyde oxidase activity;P:biological_process unknown;C:cellular_component unknown;MOBPF	O.I.	C.G.	H.G.
422.0	100.0	62.5	At4g34320	829582	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
419.3	100.0	158.2	At4g37050	829859	PLP4 (PATATIN-LIKE PROTEIN 4)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
418.9	100.0	410.0	At3g10590	820227	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
393.5	100.0	163.3	At3g50550	824219	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
389.7	100.0	93.8	At3g61900	825363	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
389.3	100.0	311.6	At3g04280	819583	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	O.I.	C.G.	H.G.
371.2	100.0	276.3	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
366.2	100.0	111.1	At4g24050	828505	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
348.8	100.0	261.2	At3g57390	824906	AGL18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	O.I.	C.G.	H.G.
338.0	100.0	148.9	At4g00270	827164	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM	O.I.	C.G.	H.G.
334.2	100.0	682.6	At5g58930	836010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFM	O.I.	C.G.	H.G.
326.2	100.0	64.6	At2g42860	818886	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV	O.I.	C.G.	H.G.
319.0	100.0	58.7	At2g47750	819387	GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)	F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMF	O.I.	C.G.	H.G.
309.5	100.0	191.4	At1g26930	839583	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA	O.I.	C.G.	H.G.
309.1	100.0	55.0	At4g29620	829083	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
307.6	100.0	492.2	At2g07711	3768480	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
305.6	100.0	397.0	At3g29075	822552	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
301.8	100.0	128.1	At3g02140	821182	TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)	Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation.	O.I.	C.G.	H.G.
295.2	100.0	122.5	At5g51810	835256	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	O.I.	C.G.	H.G.
293.3	100.0	313.0	At1g44810	841045	transcription regulator	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
281.9	100.0	271.9	At2g07687	815364	cytochrome c oxidase subunit 3	F:cytochrome-c oxidase activity;P:mitochondrial electron transport, cytochrome c to oxygen;C:membrane;MOBPFA	O.I.	C.G.	H.G.
281.3	100.0	156.4	At4g37180	829872	myb family transcription factor	myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen	O.I.	C.G.	H.G.
274.6	100.0	277.9	At5g48100	834862	TT10 (TRANSPARENT TESTA 10)	Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.	O.I.	C.G.	H.G.
267.5	100.0	138.8	At3g47120	823865	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA	O.I.	C.G.	H.G.
256.5	100.0	44.9	At4g29580	829079	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
250.0	100.0	243.4	At3g09980	820159	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
246.9	100.0	233.0	At5g40980	834100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
246.2	100.0	96.7	At1g26450	839186	beta-1,3-glucanase-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA	O.I.	C.G.	H.G.
240.2	100.0	122.6	At5g61480	836269	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
238.5	100.0	56.3	At5g47920	834843	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
233.2	100.0	198.3	At1g62990	842602	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.	O.I.	C.G.	H.G.
229.1	100.0	149.3	At2g42620	818862	MAX2 (MORE AXILLARY BRANCHES 2)	The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. Involved in positive regulation of light responses.	O.I.	C.G.	H.G.
227.5	100.0	83.3	At1g24735	839082	O-methyltransferase	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	O.I.	C.G.	H.G.
222.4	100.0	79.8	At3g13780	820588	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
221.7	100.0	274.0	At1g28420	839740	HB-1 (homeobox-1)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
219.4	100.0	139.1	At2g02230	814754	AtPP2-B1 (Phloem protein 2-B1)	F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
211.4	100.0	234.4	At5g50790	835151	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
211.1	100.0	57.1	At4g27420	828850	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
208.8	100.0	95.4	At3g21840	821738	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV	O.I.	C.G.	H.G.
206.1	100.0	201.3	At1g61090	842401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
205.4	100.0	85.1	At3g25400	822124	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
203.2	100.0	24.9	At1g73850	843721	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV	O.I.	C.G.	H.G.
199.0	100.0	134.2	At5g49320	834992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
197.4	100.0	147.3	At3g07980	819989	MAPKKK6	MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential.	O.I.	C.G.	H.G.
196.6	100.0	108.9	At3g14570	820683	ATGSL04 (glucan synthase-like 4)	encodes a protein similar to callose synthase	O.I.	C.G.	H.G.
194.7	100.0	75.9	At5g40140	834011	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex, chloroplast;PMFOB	O.I.	C.G.	H.G.
193.6	100.0	221.7	At3g14560	820682	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
193.5	100.0	179.1	At2g39510	818536	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
192.2	100.0	153.8	At3g21420	821696	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
190.5	100.0	133.5	At4g40010	830162	SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	O.I.	C.G.	H.G.
189.0	100.0	228.7	At5g19900	832112	PRLI-interacting factor, putative	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA	O.I.	C.G.	H.G.
187.9	100.0	323.6	At2g46960	819310	CYP709B1	member of CYP709B	O.I.	C.G.	H.G.
186.1	100.0	88.6	At3g59100	825079	ATGSL11 (glucan synthase-like 11)	encodes a protein similar to callose synthase	O.I.	C.G.	H.G.
182.5	100.0	133.3	At2g30080	817559	ZIP6	member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.	O.I.	C.G.	H.G.
181.2	100.0	129.9	At4g36920	829845	AP2 (APETALA 2)	Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.	O.I.	C.G.	H.G.
180.6	100.0	193.4	At1g52880	841721	NAM (NO APICAL MERISTEM)	Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.	O.I.	C.G.	H.G.
180.3	100.0	206.9	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
179.8	100.0	64.9	At5g25580	832633	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
174.3	100.0	222.0	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
174.1	100.0	410.7	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	O.I.	C.G.	H.G.
172.6	100.0	139.9	At5g25220	832593	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia	O.I.	C.G.	H.G.
172.2	100.0	56.2	At2g30960	817647	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV	O.I.	C.G.	H.G.
170.4	100.0	712.7	At2g07671	815343	H+-transporting two-sector ATPase, C subunit family protein	F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP	O.I.	C.G.	H.G.
169.8	100.0	23.3	At2g27240	817266	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PBOF	O.I.	C.G.	H.G.
164.5	100.0	58.3	At3g54390	824605	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBFOM	O.I.	C.G.	H.G.
163.1	99.9	54.7	At1g28520	839752	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
162.8	99.9	132.7	At5g11390	831010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
158.0	99.9	343.7	At4g28365	828952	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFM	O.I.	C.G.	H.G.
155.7	99.9	92.3	At4g39780	830136	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
155.5	99.9	297.3	At1g15200	838086	protein-protein interaction regulator family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
155.3	99.9	139.1	At5g25060	832577	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
149.1	99.9	240.5	At1g65440	842855	GTB1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.	O.I.	C.G.	H.G.
148.1	99.9	450.8	At2g07698	815374	ATP synthase alpha chain, mitochondrial, putative	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF	O.I.	C.G.	H.G.
146.5	99.9	162.1	At2g33480	817913	ANAC041 (Arabidopsis NAC domain containing protein 41)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
145.4	99.9	64.3	At2g46410	819249	CPC (CAPRICE)	Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.	O.I.	C.G.	H.G.
144.3	99.9	101.4	At3g54950	824660	PLA IIIA (PATATIN-LIKE PROTEIN 6)	F:unknown;P:response to other organism;C:unknown;PBOFM	O.I.	C.G.	H.G.
143.6	99.9	74.9	At4g32350	829369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
141.4	99.9	145.0	At3g09770	820135	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;MPOFVBA	O.I.	C.G.	H.G.
140.0	99.9	343.1	At3g23450	3768908	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	O.I.	C.G.	H.G.
136.3	99.9	65.9	At2g44730	819080	transcription factor	F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOBFV	O.I.	C.G.	H.G.
135.9	99.9	96.7	At1g01725	839271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
135.8	99.9	58.7	At5g40970	834099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
135.3	99.9	153.6	At2g11890	815664	adenylate cyclase	adenylate cyclase	O.I.	C.G.	H.G.
134.6	99.9	81.9	At3g02400	821210	forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein	F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
134.5	99.9	65.7	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
134.3	99.9	14.9	At1g62670	842564	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.

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GSM ID	GSM311294
Assay name	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2
GSE experiment	GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Microarray experiments to specifically-expressed genes

GSM ID GSM311294 Assay name Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

GSM ID GSM311294

Assay name Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage