CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM311293

Assay name Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
906.5 100.0 151.6 At5g40970 834099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
867.5 100.0 219.9 At1g74055 843745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
780.1 100.0 131.7 At1g68170 843145 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;PBOAM O.I. C.G. H.G.
622.0 100.0 349.6 At1g61090 842401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
588.9 100.0 73.9 At2g33350 817898 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA O.I. C.G. H.G.
548.5 100.0 112.1 At1g77660 844102 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF O.I. C.G. H.G.
516.3 100.0 167.8 At3g14780 820706 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV O.I. C.G. H.G.
455.8 100.0 66.7 At4g29620 829083 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
427.9 100.0 289.3 At3g57390 824906 AGL18 encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. O.I. C.G. H.G.
418.2 100.0 108.0 At5g47150 834761 YDG/SRA domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
403.7 100.0 165.4 At3g50550 824219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
394.7 100.0 117.7 At3g21830 821737 ASK8 (ARABIDOPSIS SKP1-LIKE 8) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
392.2 100.0 361.9 At1g44810 841045 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
388.5 100.0 394.9 At3g10590 820227 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
385.0 100.0 517.5 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
384.4 100.0 158.9 At4g00270 827164 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM O.I. C.G. H.G.
376.8 100.0 201.9 At5g24580 832529 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
373.7 100.0 137.8 At5g51810 835256 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. O.I. C.G. H.G.
368.5 100.0 214.4 At5g56300 835729 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. O.I. C.G. H.G.
362.0 100.0 49.7 At5g39130 833906 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
345.7 100.0 241.5 At1g62990 842602 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7) Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46. O.I. C.G. H.G.
345.2 100.0 143.0 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA O.I. C.G. H.G.
338.8 100.0 78.8 At1g28520 839752 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
312.4 100.0 190.4 At1g02590 839372 aldehyde oxidase, putative F:electron carrier activity, oxidoreductase activity, aldehyde oxidase activity;P:biological_process unknown;C:cellular_component unknown;MOBPF O.I. C.G. H.G.
311.2 100.0 192.0 At1g26930 839583 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA O.I. C.G. H.G.
305.6 100.0 490.6 At2g07711 3768480 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
260.1 100.0 155.6 At4g36920 829845 AP2 (APETALA 2) Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner. O.I. C.G. H.G.
254.0 100.0 362.0 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
243.9 100.0 262.6 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
242.6 100.0 180.6 At3g15790 820822 MBD11 Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. O.I. C.G. H.G.
241.7 100.0 92.3 At3g25400 822124 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
225.9 100.0 57.9 At4g29570 829078 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO O.I. C.G. H.G.
219.8 100.0 228.5 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
217.0 100.0 550.0 At5g58930 836010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFM O.I. C.G. H.G.
216.9 100.0 85.5 At4g24050 828505 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
212.7 100.0 96.2 At3g21840 821738 ASK7 (ARABIDOPSIS SKP1-LIKE 7) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV O.I. C.G. H.G.
207.9 100.0 185.6 At2g39510 818536 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
205.9 100.0 134.4 At1g78090 844144 ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE) homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases O.I. C.G. H.G.
205.6 100.0 263.9 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA O.I. C.G. H.G.
203.8 100.0 225.5 At3g04280 819583 ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators. O.I. C.G. H.G.
203.0 100.0 277.4 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
198.8 100.0 438.9 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA O.I. C.G. H.G.
198.6 100.0 47.5 At4g09820 826571 TT8 (TRANSPARENT TESTA 8) TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. O.I. C.G. H.G.
195.1 100.0 142.3 At4g29640 829085 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO O.I. C.G. H.G.
193.6 100.0 102.6 At3g02140 821182 TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation. O.I. C.G. H.G.
190.8 100.0 272.0 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. O.I. C.G. H.G.
189.1 100.0 87.9 At2g41550 818753 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
184.8 100.0 112.0 At4g22400 828335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
182.2 100.0 64.1 At3g61900 825363 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
178.6 100.0 75.5 At2g44730 819080 transcription factor F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOBFV O.I. C.G. H.G.
177.0 100.0 48.5 At5g47920 834843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
176.6 100.0 52.2 At4g27420 828850 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMFAPV O.I. C.G. H.G.
172.9 100.0 31.4 At3g19516 - - O.I. C.G. H.G.
171.8 100.0 188.0 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
169.9 100.0 377.9 At3g23450 3768908 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system O.I. C.G. H.G.
169.7 100.0 109.1 At5g08190 830715 NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12) F:transcription factor activity, DNA binding;P:regulation of transcription;C:intracellular;MPFO O.I. C.G. H.G.
167.8 100.0 79.2 At5g38620 833852 MADS-box protein (AGL73) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
166.6 100.0 1174.8 At1g62480 842545 vacuolar calcium-binding protein-related F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
165.7 100.0 120.8 At5g44080 834431 bZIP transcription factor family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV O.I. C.G. H.G.
163.2 99.9 301.5 At2g46960 819310 CYP709B1 member of CYP709B O.I. C.G. H.G.
162.6 99.9 141.5 At3g21420 821696 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
162.5 99.9 212.1 At5g19900 832112 PRLI-interacting factor, putative F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA O.I. C.G. H.G.
161.3 99.9 470.4 At2g07698 815374 ATP synthase alpha chain, mitochondrial, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF O.I. C.G. H.G.
161.0 99.9 78.2 At1g26450 839186 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA O.I. C.G. H.G.
157.5 99.9 58.9 At2g46200 819227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV O.I. C.G. H.G.
150.4 99.9 44.3 At5g15840 831441 CO (CONSTANS) Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1. O.I. C.G. H.G.
148.3 99.9 199.8 At4g24040 828504 TRE1 (TREHALASE 1) Encodes a trehalase, member of Glycoside Hydrolase Family 37. O.I. C.G. H.G.
147.2 99.9 92.2 At5g23570 832422 SGS3 (SUPPRESSOR OF GENE SILENCING 3) Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway. O.I. C.G. H.G.
146.9 99.9 222.5 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
144.7 99.9 102.1 At3g47120 823865 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA O.I. C.G. H.G.
144.0 99.9 75.0 At4g32350 829369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
138.4 99.9 190.5 At2g07687 815364 cytochrome c oxidase subunit 3 F:cytochrome-c oxidase activity;P:mitochondrial electron transport, cytochrome c to oxygen;C:membrane;MOBPFA O.I. C.G. H.G.
138.3 99.9 55.4 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
137.9 99.9 32.9 At4g29580 829079 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPM O.I. C.G. H.G.
136.1 99.9 188.0 At5g50790 835151 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
134.7 99.9 155.5 At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
133.7 99.9 631.3 At2g07671 815343 H+-transporting two-sector ATPase, C subunit family protein F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP O.I. C.G. H.G.
132.8 99.9 284.7 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
132.0 99.9 107.9 At2g02230 814754 AtPP2-B1 (Phloem protein 2-B1) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
126.2 99.9 48.1 At2g30960 817647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV O.I. C.G. H.G.
124.3 99.9 22.6 At4g29600 829081 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
123.6 99.9 29.4 At3g21860 821740 ASK10 (ARABIDOPSIS SKP1-LIKE 10) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
122.8 99.9 156.1 At2g04880 815035 ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1) Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. O.I. C.G. H.G.
122.8 99.9 62.8 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
120.4 99.9 187.8 At3g07780 819969 OBE1 (OBERON1) Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. O.I. C.G. H.G.
119.1 99.9 57.8 At2g32510 817812 MAPKKK17 member of MEKK subfamily O.I. C.G. H.G.
117.7 99.9 113.7 At3g07980 819989 MAPKKK6 MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential. O.I. C.G. H.G.
116.5 99.9 85.3 At5g61480 836269 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
116.4 99.9 166.1 At3g09980 820159 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
115.8 99.9 130.3 At5g54730 835562 AtATG18f F:molecular_function unknown;P:response to starvation;C:chloroplast;MFPOB O.I. C.G. H.G.
114.7 99.9 114.0 At5g25220 832593 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia O.I. C.G. H.G.
114.5 99.9 297.1 At1g75390 843875 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44) F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOM O.I. C.G. H.G.
114.5 99.9 117.3 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
113.3 99.9 498.6 At1g76990 844035 ACR3 F:amino acid binding;P:nitrogen compound metabolic process, metabolic process;C:cytosol;BOP O.I. C.G. H.G.
110.9 99.9 103.9 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter O.I. C.G. H.G.
110.6 99.9 176.4 At5g48100 834862 TT10 (TRANSPARENT TESTA 10) Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. O.I. C.G. H.G.
110.5 99.9 250.6 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
110.2 99.9 53.7 At4g10940 826693 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MVOPF O.I. C.G. H.G.
109.7 99.9 46.8 At4g29650 829086 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO O.I. C.G. H.G.
108.7 99.9 102.8 At2g30080 817559 ZIP6 member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
906.5	100.0	151.6	At5g40970	834099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
867.5	100.0	219.9	At1g74055	843745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
780.1	100.0	131.7	At1g68170	843145	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
622.0	100.0	349.6	At1g61090	842401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
588.9	100.0	73.9	At2g33350	817898	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA	O.I.	C.G.	H.G.
548.5	100.0	112.1	At1g77660	844102	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF	O.I.	C.G.	H.G.
516.3	100.0	167.8	At3g14780	820706	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV	O.I.	C.G.	H.G.
455.8	100.0	66.7	At4g29620	829083	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
427.9	100.0	289.3	At3g57390	824906	AGL18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	O.I.	C.G.	H.G.
418.2	100.0	108.0	At5g47150	834761	YDG/SRA domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
403.7	100.0	165.4	At3g50550	824219	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
394.7	100.0	117.7	At3g21830	821737	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
392.2	100.0	361.9	At1g44810	841045	transcription regulator	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
388.5	100.0	394.9	At3g10590	820227	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
385.0	100.0	517.5	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
384.4	100.0	158.9	At4g00270	827164	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM	O.I.	C.G.	H.G.
376.8	100.0	201.9	At5g24580	832529	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
373.7	100.0	137.8	At5g51810	835256	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	O.I.	C.G.	H.G.
368.5	100.0	214.4	At5g56300	835729	GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)	A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.	O.I.	C.G.	H.G.
362.0	100.0	49.7	At5g39130	833906	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
345.7	100.0	241.5	At1g62990	842602	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.	O.I.	C.G.	H.G.
345.2	100.0	143.0	At5g17980	831665	C2 domain-containing protein	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA	O.I.	C.G.	H.G.
338.8	100.0	78.8	At1g28520	839752	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
312.4	100.0	190.4	At1g02590	839372	aldehyde oxidase, putative	F:electron carrier activity, oxidoreductase activity, aldehyde oxidase activity;P:biological_process unknown;C:cellular_component unknown;MOBPF	O.I.	C.G.	H.G.
311.2	100.0	192.0	At1g26930	839583	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA	O.I.	C.G.	H.G.
305.6	100.0	490.6	At2g07711	3768480	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
260.1	100.0	155.6	At4g36920	829845	AP2 (APETALA 2)	Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.	O.I.	C.G.	H.G.
254.0	100.0	362.0	At3g29075	822552	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
243.9	100.0	262.6	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
242.6	100.0	180.6	At3g15790	820822	MBD11	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	O.I.	C.G.	H.G.
241.7	100.0	92.3	At3g25400	822124	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
225.9	100.0	57.9	At4g29570	829078	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
219.8	100.0	228.5	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
217.0	100.0	550.0	At5g58930	836010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFM	O.I.	C.G.	H.G.
216.9	100.0	85.5	At4g24050	828505	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
212.7	100.0	96.2	At3g21840	821738	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV	O.I.	C.G.	H.G.
207.9	100.0	185.6	At2g39510	818536	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
205.9	100.0	134.4	At1g78090	844144	ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE)	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	O.I.	C.G.	H.G.
205.6	100.0	263.9	At1g28420	839740	HB-1 (homeobox-1)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
203.8	100.0	225.5	At3g04280	819583	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	O.I.	C.G.	H.G.
203.0	100.0	277.4	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
198.8	100.0	438.9	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	O.I.	C.G.	H.G.
198.6	100.0	47.5	At4g09820	826571	TT8 (TRANSPARENT TESTA 8)	TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.	O.I.	C.G.	H.G.
195.1	100.0	142.3	At4g29640	829085	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
193.6	100.0	102.6	At3g02140	821182	TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)	Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation.	O.I.	C.G.	H.G.
190.8	100.0	272.0	At1g65440	842855	GTB1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.	O.I.	C.G.	H.G.
189.1	100.0	87.9	At2g41550	818753	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
184.8	100.0	112.0	At4g22400	828335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
182.2	100.0	64.1	At3g61900	825363	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
178.6	100.0	75.5	At2g44730	819080	transcription factor	F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOBFV	O.I.	C.G.	H.G.
177.0	100.0	48.5	At5g47920	834843	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
176.6	100.0	52.2	At4g27420	828850	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
172.9	100.0	31.4	At3g19516		-	-	O.I.	C.G.	H.G.
171.8	100.0	188.0	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
169.9	100.0	377.9	At3g23450	3768908	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	O.I.	C.G.	H.G.
169.7	100.0	109.1	At5g08190	830715	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:intracellular;MPFO	O.I.	C.G.	H.G.
167.8	100.0	79.2	At5g38620	833852	MADS-box protein (AGL73)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
166.6	100.0	1174.8	At1g62480	842545	vacuolar calcium-binding protein-related	F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
165.7	100.0	120.8	At5g44080	834431	bZIP transcription factor family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV	O.I.	C.G.	H.G.
163.2	99.9	301.5	At2g46960	819310	CYP709B1	member of CYP709B	O.I.	C.G.	H.G.
162.6	99.9	141.5	At3g21420	821696	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
162.5	99.9	212.1	At5g19900	832112	PRLI-interacting factor, putative	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA	O.I.	C.G.	H.G.
161.3	99.9	470.4	At2g07698	815374	ATP synthase alpha chain, mitochondrial, putative	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF	O.I.	C.G.	H.G.
161.0	99.9	78.2	At1g26450	839186	beta-1,3-glucanase-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA	O.I.	C.G.	H.G.
157.5	99.9	58.9	At2g46200	819227	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV	O.I.	C.G.	H.G.
150.4	99.9	44.3	At5g15840	831441	CO (CONSTANS)	Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.	O.I.	C.G.	H.G.
148.3	99.9	199.8	At4g24040	828504	TRE1 (TREHALASE 1)	Encodes a trehalase, member of Glycoside Hydrolase Family 37.	O.I.	C.G.	H.G.
147.2	99.9	92.2	At5g23570	832422	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.	O.I.	C.G.	H.G.
146.9	99.9	222.5	At4g12890	826901	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
144.7	99.9	102.1	At3g47120	823865	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA	O.I.	C.G.	H.G.
144.0	99.9	75.0	At4g32350	829369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
138.4	99.9	190.5	At2g07687	815364	cytochrome c oxidase subunit 3	F:cytochrome-c oxidase activity;P:mitochondrial electron transport, cytochrome c to oxygen;C:membrane;MOBPFA	O.I.	C.G.	H.G.
138.3	99.9	55.4	At5g13670	831212	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
137.9	99.9	32.9	At4g29580	829079	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
136.1	99.9	188.0	At5g50790	835151	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
134.7	99.9	155.5	At5g17470	831613	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
133.7	99.9	631.3	At2g07671	815343	H+-transporting two-sector ATPase, C subunit family protein	F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP	O.I.	C.G.	H.G.
132.8	99.9	284.7	At3g50690	824233	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
132.0	99.9	107.9	At2g02230	814754	AtPP2-B1 (Phloem protein 2-B1)	F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
126.2	99.9	48.1	At2g30960	817647	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV	O.I.	C.G.	H.G.
124.3	99.9	22.6	At4g29600	829081	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
123.6	99.9	29.4	At3g21860	821740	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
122.8	99.9	156.1	At2g04880	815035	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1.	O.I.	C.G.	H.G.
122.8	99.9	62.8	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
120.4	99.9	187.8	At3g07780	819969	OBE1 (OBERON1)	Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.	O.I.	C.G.	H.G.
119.1	99.9	57.8	At2g32510	817812	MAPKKK17	member of MEKK subfamily	O.I.	C.G.	H.G.
117.7	99.9	113.7	At3g07980	819989	MAPKKK6	MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential.	O.I.	C.G.	H.G.
116.5	99.9	85.3	At5g61480	836269	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
116.4	99.9	166.1	At3g09980	820159	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
115.8	99.9	130.3	At5g54730	835562	AtATG18f	F:molecular_function unknown;P:response to starvation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
114.7	99.9	114.0	At5g25220	832593	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia	O.I.	C.G.	H.G.
114.5	99.9	297.1	At1g75390	843875	AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44)	F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOM	O.I.	C.G.	H.G.
114.5	99.9	117.3	At2g39260	818511	RNA binding / binding / protein binding	F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
113.3	99.9	498.6	At1g76990	844035	ACR3	F:amino acid binding;P:nitrogen compound metabolic process, metabolic process;C:cytosol;BOP	O.I.	C.G.	H.G.
110.9	99.9	103.9	At4g26590	828766	OPT5 (OLIGOPEPTIDE TRANSPORTER 5)	oligopeptide transporter	O.I.	C.G.	H.G.
110.6	99.9	176.4	At5g48100	834862	TT10 (TRANSPARENT TESTA 10)	Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.	O.I.	C.G.	H.G.
110.5	99.9	250.6	At1g15200	838086	protein-protein interaction regulator family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
110.2	99.9	53.7	At4g10940	826693	PHD finger family protein	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MVOPF	O.I.	C.G.	H.G.
109.7	99.9	46.8	At4g29650	829086	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
108.7	99.9	102.8	At2g30080	817559	ZIP6	member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.	O.I.	C.G.	H.G.

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GSM ID	GSM311293
Assay name	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1
GSE experiment	GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Microarray experiments to specifically-expressed genes

GSM ID GSM311293 Assay name Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

GSM ID GSM311293

Assay name Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage