CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM311292

Assay name Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2938.7 100.0 364.5 At2g24950 817034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
2425.3 100.0 414.4 At1g36340 840541 UBC31 (ubiquitin-conjugating enzyme 31) F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:vacuole;MFOPV O.I. C.G. H.G.
2371.9 100.0 385.3 At5g38960 833888 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
2341.7 100.0 584.8 At1g19320 838514 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
2127.9 100.0 292.0 At2g44250 819033 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
1872.2 100.0 370.6 At2g34890 818054 CTP synthase, putative / UTP--ammonia ligase, putative F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:endomembrane system;OBMFAP O.I. C.G. H.G.
1755.7 100.0 364.0 At2g20170 816537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
1731.3 100.0 1225.4 At5g40155 834013 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
1712.8 100.0 168.7 At2g23260 816858 UGT84B1 (UDP-glucosyl transferase 84B1) F:indole-3-acetate beta-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVFO O.I. C.G. H.G.
1647.4 100.0 148.6 At5g11220 830992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1632.1 100.0 195.7 At1g55550 842004 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:mitochondrion;MOFPB O.I. C.G. H.G.
1579.4 100.0 148.0 At4g21080 827855 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
1451.2 100.0 209.8 At4g21690 828256 GA3OX3 (GIBBERELLIN 3-OXIDASE 3) F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
1372.0 100.0 212.2 At2g04750 815018 fimbrin-like protein, putative F:molecular_function unknown;P:biological_process unknown;C:cell wall;MOFP O.I. C.G. H.G.
1311.8 100.0 173.7 At3g30280 822728 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
1240.1 100.0 195.2 At4g22430 828338 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1225.1 100.0 96.9 At3g56520 824819 no apical meristem (NAM) family protein F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;P O.I. C.G. H.G.
1218.6 100.0 108.3 At1g59670 842257 ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
1167.4 100.0 122.4 At1g47810 841195 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1142.4 100.0 116.0 At5g07880 830681 SNAP29 member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33. O.I. C.G. H.G.
1121.6 100.0 68.5 At3g25750 822166 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1023.1 100.0 137.5 At2g21420 816681 zinc finger protein-related F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
1019.2 100.0 146.8 At3g49300 824091 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBV O.I. C.G. H.G.
993.8 100.0 192.6 At3g03240 821317 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;PBOF O.I. C.G. H.G.
968.4 100.0 258.3 At2g20160 816536 MEO (MEIDOS) F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
948.9 100.0 222.6 At1g14580 838020 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFB O.I. C.G. H.G.
948.5 100.0 365.6 At2g27070 817249 ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13) member of Response Regulator: B- Type O.I. C.G. H.G.
943.8 100.0 321.2 At5g24316 832501 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO O.I. C.G. H.G.
932.2 100.0 476.9 At3g60700 825241 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
900.6 100.0 124.8 At4g27550 828864 ATTPS4 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
894.9 100.0 191.3 At2g20290 816548 XIG member of Myosin-like proteins O.I. C.G. H.G.
883.8 100.0 98.1 At5g06670 830555 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFBPAV O.I. C.G. H.G.
879.5 100.0 98.5 At1g27220 839611 paired amphipathic helix repeat-containing protein F:nucleic acid binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOB O.I. C.G. H.G.
844.4 100.0 443.7 At2g15325 816022 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
821.4 100.0 271.3 At2g17750 816284 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
798.8 100.0 90.2 At5g19700 832090 MATE efflux protein-related F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
797.2 100.0 236.1 At3g18610 821392 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1) F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
775.0 100.0 106.6 At4g02710 828199 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
761.7 100.0 342.1 At5g27330 832791 - F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAV O.I. C.G. H.G.
717.2 100.0 65.2 At1g31530 840043 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity;P:unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
688.6 100.0 526.0 At5g10230 830887 ANNAT7 (ANNEXIN ARABIDOPSIS 7) Encodes a calcium-binding protein annexin (AnnAt7). O.I. C.G. H.G.
667.0 100.0 122.3 At1g27040 839593 nitrate transporter, putative F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
653.1 100.0 147.3 At2g18490 816364 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
649.2 100.0 74.9 At5g62120 836332 ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23) member of Response Regulator: B- Type O.I. C.G. H.G.
629.7 100.0 194.2 At3g11740 820346 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
607.9 100.0 147.1 At2g27700 817316 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAP O.I. C.G. H.G.
601.4 100.0 76.7 At4g29620 829083 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
561.2 100.0 63.5 At5g17320 831598 HDG9 (HOMEODOMAIN GLABROUS 9) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
541.0 100.0 137.8 At3g21830 821737 ASK8 (ARABIDOPSIS SKP1-LIKE 8) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
538.6 100.0 310.9 At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
535.0 100.0 42.7 At5g62110 836331 DNA binding F:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVP O.I. C.G. H.G.
532.0 100.0 78.5 At5g36680 833633 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
503.3 100.0 68.7 At5g05030 830385 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
501.5 100.0 277.8 At4g25020 828605 KOW domain-containing protein / D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
495.7 100.0 312.1 At1g61090 842401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
490.5 100.0 86.8 At4g29140 829035 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
482.7 100.0 59.7 At2g47430 819356 CKI1 (CYTOKININ-INDEPENDENT 1) Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte. O.I. C.G. H.G.
478.5 100.0 100.1 At5g40430 834041 MYB22 (myb domain protein 22) Encodes a putative transcription factor (MYB22). O.I. C.G. H.G.
474.6 100.0 53.4 At2g17310 816238 SON1 (SUPPRESSOR OF NIM1-1 1) Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance O.I. C.G. H.G.
468.9 100.0 96.5 At4g13380 826969 MEE56 (maternal effect embryo arrest 56) F:metal ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OMPBFAV O.I. C.G. H.G.
459.4 100.0 429.3 At3g10590 820227 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
429.0 100.0 83.9 At5g41450 834146 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
417.5 100.0 95.9 At2g46200 819227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV O.I. C.G. H.G.
413.5 100.0 57.0 At4g29580 829079 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPM O.I. C.G. H.G.
413.1 100.0 125.6 At3g42830 823327 ring-box protein Roc1/Rbx1/Hrt1, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV O.I. C.G. H.G.
411.4 100.0 106.0 At1g70430 843379 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA O.I. C.G. H.G.
410.0 100.0 71.5 At4g37360 829890 CYP81D2 member of CYP81D O.I. C.G. H.G.
382.2 100.0 47.0 At1g28630 839763 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
374.3 100.0 439.1 At1g30710 839951 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
357.2 100.0 46.1 At1g24210 839035 paired amphipathic helix repeat-containing protein F:molecular_function unknown;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
355.1 100.0 129.9 At1g72580 843590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
350.0 100.0 114.4 At1g30860 839970 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
347.4 100.0 362.9 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
344.5 100.0 48.1 At3g58020 824971 heat shock protein binding F:heat shock protein binding;P:protein folding;C:nucleus;MPOBFA O.I. C.G. H.G.
343.0 100.0 32.4 At2g03770 814904 sulfotransferase family protein F:sulfotransferase activity;P:unknown;C:unknown;MOPBF O.I. C.G. H.G.
341.6 100.0 188.7 At3g57160 824883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
341.3 100.0 148.5 At5g10220 830886 ANN6 (ANNEXIN ARABIDOPSIS 6) Encodes a calcium-binding protein annexin (AnnAt6). O.I. C.G. H.G.
332.5 100.0 85.7 At3g03230 821322 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:membrane;PBOF O.I. C.G. H.G.
313.4 100.0 68.5 At3g60010 825171 ASK13 (ARABIDOPSIS SKP1-LIKE 13) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFV O.I. C.G. H.G.
311.9 100.0 44.0 At4g13060 826920 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
310.2 100.0 202.8 At1g02980 839415 CUL2 (CULLIN 2) encodes an Arabidopsis cullin O.I. C.G. H.G.
309.9 100.0 406.1 At5g59120 836030 ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
303.4 100.0 51.1 At5g40360 834034 MYB115 (myb domain protein 115) putative transcription factor (MYB115) O.I. C.G. H.G.
292.4 100.0 203.0 At3g12480 820427 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOB O.I. C.G. H.G.
283.1 100.0 62.6 At2g26320 817172 AGL33 (AGAMOUS-LIKE 33) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
280.7 100.0 110.6 At3g21840 821738 ASK7 (ARABIDOPSIS SKP1-LIKE 7) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV O.I. C.G. H.G.
279.8 100.0 45.3 At5g56200 835719 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV O.I. C.G. H.G.
277.9 100.0 397.3 At5g38195 833801 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
276.8 100.0 178.4 At5g65890 836718 ACR1 (ACT Domain Repeat 1) Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques. O.I. C.G. H.G.
275.9 100.0 46.8 At3g66652 819846 fip1 motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
273.6 100.0 132.5 At1g09510 837476 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
271.5 100.0 228.8 At1g15310 838100 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins O.I. C.G. H.G.
269.2 100.0 96.4 At1g17960 838375 threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative F:nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding;P:threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP O.I. C.G. H.G.
268.5 100.0 70.2 At1g28520 839752 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
265.0 100.0 136.3 At5g08190 830715 NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12) F:transcription factor activity, DNA binding;P:regulation of transcription;C:intracellular;MPFO O.I. C.G. H.G.
265.0 100.0 81.7 At5g07260 830617 homeobox protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
263.5 100.0 94.1 At5g19310 832051 homeotic gene regulator, putative F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
259.8 100.0 191.3 At1g20140 838604 ASK4 (ARABIDOPSIS SKP1-LIKE 4) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV O.I. C.G. H.G.
256.6 100.0 154.7 At5g40710 834071 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPOBF O.I. C.G. H.G.
256.6 100.0 22.0 At1g65890 842901 AAE12 (ACYL ACTIVATING ENZYME 12) F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2938.7	100.0	364.5	At2g24950	817034	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
2425.3	100.0	414.4	At1g36340	840541	UBC31 (ubiquitin-conjugating enzyme 31)	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:vacuole;MFOPV	O.I.	C.G.	H.G.
2371.9	100.0	385.3	At5g38960	833888	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
2341.7	100.0	584.8	At1g19320	838514	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
2127.9	100.0	292.0	At2g44250	819033	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
1872.2	100.0	370.6	At2g34890	818054	CTP synthase, putative / UTP--ammonia ligase, putative	F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:endomembrane system;OBMFAP	O.I.	C.G.	H.G.
1755.7	100.0	364.0	At2g20170	816537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
1731.3	100.0	1225.4	At5g40155	834013	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
1712.8	100.0	168.7	At2g23260	816858	UGT84B1 (UDP-glucosyl transferase 84B1)	F:indole-3-acetate beta-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVFO	O.I.	C.G.	H.G.
1647.4	100.0	148.6	At5g11220	830992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1632.1	100.0	195.7	At1g55550	842004	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:mitochondrion;MOFPB	O.I.	C.G.	H.G.
1579.4	100.0	148.0	At4g21080	827855	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
1451.2	100.0	209.8	At4g21690	828256	GA3OX3 (GIBBERELLIN 3-OXIDASE 3)	F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
1372.0	100.0	212.2	At2g04750	815018	fimbrin-like protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cell wall;MOFP	O.I.	C.G.	H.G.
1311.8	100.0	173.7	At3g30280	822728	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
1240.1	100.0	195.2	At4g22430	828338	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1225.1	100.0	96.9	At3g56520	824819	no apical meristem (NAM) family protein	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;P	O.I.	C.G.	H.G.
1218.6	100.0	108.3	At1g59670	842257	ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
1167.4	100.0	122.4	At1g47810	841195	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1142.4	100.0	116.0	At5g07880	830681	SNAP29	member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.	O.I.	C.G.	H.G.
1121.6	100.0	68.5	At3g25750	822166	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1023.1	100.0	137.5	At2g21420	816681	zinc finger protein-related	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
1019.2	100.0	146.8	At3g49300	824091	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
993.8	100.0	192.6	At3g03240	821317	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;PBOF	O.I.	C.G.	H.G.
968.4	100.0	258.3	At2g20160	816536	MEO (MEIDOS)	F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
948.9	100.0	222.6	At1g14580	838020	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFB	O.I.	C.G.	H.G.
948.5	100.0	365.6	At2g27070	817249	ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13)	member of Response Regulator: B- Type	O.I.	C.G.	H.G.
943.8	100.0	321.2	At5g24316	832501	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO	O.I.	C.G.	H.G.
932.2	100.0	476.9	At3g60700	825241	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
900.6	100.0	124.8	At4g27550	828864	ATTPS4	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
894.9	100.0	191.3	At2g20290	816548	XIG	member of Myosin-like proteins	O.I.	C.G.	H.G.
883.8	100.0	98.1	At5g06670	830555	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFBPAV	O.I.	C.G.	H.G.
879.5	100.0	98.5	At1g27220	839611	paired amphipathic helix repeat-containing protein	F:nucleic acid binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOB	O.I.	C.G.	H.G.
844.4	100.0	443.7	At2g15325	816022	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
821.4	100.0	271.3	At2g17750	816284	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
798.8	100.0	90.2	At5g19700	832090	MATE efflux protein-related	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
797.2	100.0	236.1	At3g18610	821392	ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)	F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
775.0	100.0	106.6	At4g02710	828199	kinase interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
761.7	100.0	342.1	At5g27330	832791	-	F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAV	O.I.	C.G.	H.G.
717.2	100.0	65.2	At1g31530	840043	endonuclease/exonuclease/phosphatase family protein	F:hydrolase activity;P:unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
688.6	100.0	526.0	At5g10230	830887	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	Encodes a calcium-binding protein annexin (AnnAt7).	O.I.	C.G.	H.G.
667.0	100.0	122.3	At1g27040	839593	nitrate transporter, putative	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
653.1	100.0	147.3	At2g18490	816364	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
649.2	100.0	74.9	At5g62120	836332	ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23)	member of Response Regulator: B- Type	O.I.	C.G.	H.G.
629.7	100.0	194.2	At3g11740	820346	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
607.9	100.0	147.1	At2g27700	817316	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAP	O.I.	C.G.	H.G.
601.4	100.0	76.7	At4g29620	829083	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
561.2	100.0	63.5	At5g17320	831598	HDG9 (HOMEODOMAIN GLABROUS 9)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
541.0	100.0	137.8	At3g21830	821737	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
538.6	100.0	310.9	At5g17470	831613	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
535.0	100.0	42.7	At5g62110	836331	DNA binding	F:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVP	O.I.	C.G.	H.G.
532.0	100.0	78.5	At5g36680	833633	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
503.3	100.0	68.7	At5g05030	830385	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
501.5	100.0	277.8	At4g25020	828605	KOW domain-containing protein / D111/G-patch domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
495.7	100.0	312.1	At1g61090	842401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
490.5	100.0	86.8	At4g29140	829035	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
482.7	100.0	59.7	At2g47430	819356	CKI1 (CYTOKININ-INDEPENDENT 1)	Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte.	O.I.	C.G.	H.G.
478.5	100.0	100.1	At5g40430	834041	MYB22 (myb domain protein 22)	Encodes a putative transcription factor (MYB22).	O.I.	C.G.	H.G.
474.6	100.0	53.4	At2g17310	816238	SON1 (SUPPRESSOR OF NIM1-1 1)	Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance	O.I.	C.G.	H.G.
468.9	100.0	96.5	At4g13380	826969	MEE56 (maternal effect embryo arrest 56)	F:metal ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OMPBFAV	O.I.	C.G.	H.G.
459.4	100.0	429.3	At3g10590	820227	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
429.0	100.0	83.9	At5g41450	834146	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
417.5	100.0	95.9	At2g46200	819227	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAV	O.I.	C.G.	H.G.
413.5	100.0	57.0	At4g29580	829079	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
413.1	100.0	125.6	At3g42830	823327	ring-box protein Roc1/Rbx1/Hrt1, putative	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV	O.I.	C.G.	H.G.
411.4	100.0	106.0	At1g70430	843379	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA	O.I.	C.G.	H.G.
410.0	100.0	71.5	At4g37360	829890	CYP81D2	member of CYP81D	O.I.	C.G.	H.G.
382.2	100.0	47.0	At1g28630	839763	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
374.3	100.0	439.1	At1g30710	839951	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
357.2	100.0	46.1	At1g24210	839035	paired amphipathic helix repeat-containing protein	F:molecular_function unknown;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
355.1	100.0	129.9	At1g72580	843590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
350.0	100.0	114.4	At1g30860	839970	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
347.4	100.0	362.9	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
344.5	100.0	48.1	At3g58020	824971	heat shock protein binding	F:heat shock protein binding;P:protein folding;C:nucleus;MPOBFA	O.I.	C.G.	H.G.
343.0	100.0	32.4	At2g03770	814904	sulfotransferase family protein	F:sulfotransferase activity;P:unknown;C:unknown;MOPBF	O.I.	C.G.	H.G.
341.6	100.0	188.7	At3g57160	824883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
341.3	100.0	148.5	At5g10220	830886	ANN6 (ANNEXIN ARABIDOPSIS 6)	Encodes a calcium-binding protein annexin (AnnAt6).	O.I.	C.G.	H.G.
332.5	100.0	85.7	At3g03230	821322	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:membrane;PBOF	O.I.	C.G.	H.G.
313.4	100.0	68.5	At3g60010	825171	ASK13 (ARABIDOPSIS SKP1-LIKE 13)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFV	O.I.	C.G.	H.G.
311.9	100.0	44.0	At4g13060	826920	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
310.2	100.0	202.8	At1g02980	839415	CUL2 (CULLIN 2)	encodes an Arabidopsis cullin	O.I.	C.G.	H.G.
309.9	100.0	406.1	At5g59120	836030	ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13)	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
303.4	100.0	51.1	At5g40360	834034	MYB115 (myb domain protein 115)	putative transcription factor (MYB115)	O.I.	C.G.	H.G.
292.4	100.0	203.0	At3g12480	820427	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOB	O.I.	C.G.	H.G.
283.1	100.0	62.6	At2g26320	817172	AGL33 (AGAMOUS-LIKE 33)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
280.7	100.0	110.6	At3g21840	821738	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV	O.I.	C.G.	H.G.
279.8	100.0	45.3	At5g56200	835719	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV	O.I.	C.G.	H.G.
277.9	100.0	397.3	At5g38195	833801	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
276.8	100.0	178.4	At5g65890	836718	ACR1 (ACT Domain Repeat 1)	Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	O.I.	C.G.	H.G.
275.9	100.0	46.8	At3g66652	819846	fip1 motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
273.6	100.0	132.5	At1g09510	837476	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
271.5	100.0	228.8	At1g15310	838100	ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins	O.I.	C.G.	H.G.
269.2	100.0	96.4	At1g17960	838375	threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative	F:nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding;P:threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP	O.I.	C.G.	H.G.
268.5	100.0	70.2	At1g28520	839752	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
265.0	100.0	136.3	At5g08190	830715	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:intracellular;MPFO	O.I.	C.G.	H.G.
265.0	100.0	81.7	At5g07260	830617	homeobox protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
263.5	100.0	94.1	At5g19310	832051	homeotic gene regulator, putative	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
259.8	100.0	191.3	At1g20140	838604	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV	O.I.	C.G.	H.G.
256.6	100.0	154.7	At5g40710	834071	zinc finger (C2H2 type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPOBF	O.I.	C.G.	H.G.
256.6	100.0	22.0	At1g65890	842901	AAE12 (ACYL ACTIVATING ENZYME 12)	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM311292
Assay name	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2
GSE experiment	GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Microarray experiments to specifically-expressed genes

GSM ID GSM311292 Assay name Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

GSM ID GSM311292

Assay name Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage