Microarray experiments to specifically-expressed genes

GSM ID GSM311291
Assay name Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1
GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3117.7100.0478.2At2g34890818054CTP synthase, putative / UTP--ammonia ligase, putativeF:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:endomembrane system;OBMFAPO.I.C.G.H.G.
2669.4100.0189.2At5g11220830992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
2473.4100.0432.0At2g20170816537unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
2473.3100.0418.5At1g36340840541UBC31 (ubiquitin-conjugating enzyme 31)F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:vacuole;MFOPVO.I.C.G.H.G.
2413.6100.0281.4At2g04750815018fimbrin-like protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cell wall;MOFPO.I.C.G.H.G.
2221.0100.0298.3At2g44250819033unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
2141.1100.0188.6At2g23260816858UGT84B1 (UDP-glucosyl transferase 84B1)F:indole-3-acetate beta-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVFOO.I.C.G.H.G.
2113.5100.0555.6At1g19320838514pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
2107.2100.0363.2At5g38960833888germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
1916.5100.0294.3At2g24950817034unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
1753.2100.0232.1At4g22430828338-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
1659.5100.097.9At1g28630839763unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
1649.9100.0134.0At5g06670830555ATP binding / microtubule motorF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFBPAVO.I.C.G.H.G.
1632.5100.0193.8At3g30280822728transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
1600.1100.0189.5At1g27040839593nitrate transporter, putativeF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
1497.6100.0132.8At5g07880830681SNAP29member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.O.I.C.G.H.G.
1479.7100.0277.9At1g14580838020zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBO.I.C.G.H.G.
1478.8100.0143.2At4g21080827855Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
1442.0100.0232.0At3g03240821317esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;PBOFO.I.C.G.H.G.
1434.8100.0128.9At5g36680833633unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
1346.5100.0435.6At2g27070817249ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13)member of Response Regulator: B- TypeO.I.C.G.H.G.
1340.6100.0234.1At2g20290816548XIGmember of Myosin-like proteinsO.I.C.G.H.G.
1306.3100.0199.0At4g21690828256GA3OX3 (GIBBERELLIN 3-OXIDASE 3)F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
1299.4100.0149.9At4g27550828864ATTPS4Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
1291.1100.01058.2At5g40155834013-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
1191.5100.0101.4At5g62120836332ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23)member of Response Regulator: B- TypeO.I.C.G.H.G.
1139.8100.0105.5At4g29620829083cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
1113.7100.0279.0At3g18610821392ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
1083.2100.0141.4At2g21420816681zinc finger protein-relatedF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
1058.2100.0192.7At3g21830821737ASK8 (ARABIDOPSIS SKP1-LIKE 8)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVO.I.C.G.H.G.
1050.4100.0269.0At2g20160816536MEO (MEIDOS)F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFVO.I.C.G.H.G.
1027.0100.099.4At1g59670842257ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
1015.5100.0114.2At1g47810841195F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
990.9100.0243.6At3g11740820346unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
932.5100.0477.0At3g60700825241unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
925.3100.062.2At3g25750822166F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
879.2100.0136.3At3g49300824091proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBVO.I.C.G.H.G.
871.1100.0176.1At2g27700817316eukaryotic translation initiation factor 2 family protein / eIF-2 family proteinF:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAPO.I.C.G.H.G.
870.0100.071.8At1g31530840043endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity;P:unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
867.8100.097.8At1g27220839611paired amphipathic helix repeat-containing proteinF:nucleic acid binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBO.I.C.G.H.G.
861.9100.081.2At3g56520824819no apical meristem (NAM) family proteinF:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PO.I.C.G.H.G.
848.8100.0111.5At4g02710828199kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
829.8100.0272.7At2g17750816284unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
783.3100.076.0At2g47430819356CKI1 (CYTOKININ-INDEPENDENT 1)Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte.O.I.C.G.H.G.
776.9100.0345.5At5g27330832791-F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAVO.I.C.G.H.G.
765.0100.048.3At2g03770814904sulfotransferase family proteinF:sulfotransferase activity;P:unknown;C:unknown;MOPBFO.I.C.G.H.G.
737.4100.066.5At2g17310816238SON1 (SUPPRESSOR OF NIM1-1 1)Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistanceO.I.C.G.H.G.
731.1100.0141.4At1g70430843379protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
719.6100.0108.7At5g41450834146zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
709.9100.081.6At5g05030830385unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
692.7100.0275.2At5g24316832501proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFOO.I.C.G.H.G.
681.1100.076.5At5g40360834034MYB115 (myb domain protein 115)putative transcription factor (MYB115)O.I.C.G.H.G.
671.7100.0160.1At3g42830823327ring-box protein Roc1/Rbx1/Hrt1, putativeF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPVO.I.C.G.H.G.
620.2100.096.4At3g60010825171ASK13 (ARABIDOPSIS SKP1-LIKE 13)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFVO.I.C.G.H.G.
608.6100.043.1At4g21050827852Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
606.8100.0345.3At1g61090842401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
603.4100.0492.3At5g10230830887ANNAT7 (ANNEXIN ARABIDOPSIS 7)Encodes a calcium-binding protein annexin (AnnAt7).O.I.C.G.H.G.
593.5100.086.0At4g37360829890CYP81D2member of CYP81DO.I.C.G.H.G.
577.2100.067.3At4g29580829079cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMO.I.C.G.H.G.
567.6100.076.1At5g19700832090MATE efflux protein-relatedF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
564.1100.0273.5At1g02980839415CUL2 (CULLIN 2)encodes an Arabidopsis cullinO.I.C.G.H.G.
553.2100.043.4At5g62110836331DNA bindingF:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVPO.I.C.G.H.G.
545.4100.091.6At4g29140829035MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
535.9100.0112.1At1g55550842004ATP binding / microtubule motorF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:mitochondrion;MOFPBO.I.C.G.H.G.
523.6100.055.9At1g24210839035paired amphipathic helix repeat-containing proteinF:molecular_function unknown;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.C.G.H.G.
510.0100.0132.7At1g17960838375threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putativeF:nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding;P:threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.C.G.H.G.
501.5100.0179.4At1g09510837476cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
501.3100.063.1At3g66652819846fip1 motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.C.G.H.G.
492.8100.0444.7At3g10590820227myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMO.I.C.G.H.G.
491.7100.0104.2At3g03230821322esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:membrane;PBOFO.I.C.G.H.G.
491.2100.0338.4At2g15325816022protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
478.0100.0211.1At5g40710834071zinc finger (C2H2 type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPOBFO.I.C.G.H.G.
468.7100.058.0At5g17320831598HDG9 (HOMEODOMAIN GLABROUS 9)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
459.5100.0124.3At5g19310832051homeotic gene regulator, putativeF:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
455.0100.097.6At5g40430834041MYB22 (myb domain protein 22)Encodes a putative transcription factor (MYB22).O.I.C.G.H.G.
453.9100.091.3At1g28520839752VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
443.1100.0138.9At3g21840821738ASK7 (ARABIDOPSIS SKP1-LIKE 7)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOVO.I.C.G.H.G.
439.9100.0214.1At3g57160824883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
437.2100.0105.0At5g07260830617homeobox protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
434.4100.021.9At4g00160828180F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
425.1100.0118.8At2g18490816364zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
415.2100.0162.3At3g17250820986protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVAO.I.C.G.H.G.
402.8100.0238.3At3g12480820427NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOBO.I.C.G.H.G.
393.2100.0159.4At5g10220830886ANN6 (ANNEXIN ARABIDOPSIS 6)Encodes a calcium-binding protein annexin (AnnAt6).O.I.C.G.H.G.
388.5100.0365.2At3g13060820492-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
385.2100.0103.8At1g73130843644unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.C.G.H.G.
380.1100.0464.6At5g38195833801protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
379.7100.0261.1At5g17470831613calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
377.1100.0118.8At1g30860839970protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
364.7100.0123.9At2g30470817597HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50ÁM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.O.I.C.G.H.G.
353.9100.0238.1At5g51410835215LUC7 N_terminus domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
348.7100.0160.9At1g28300839724LEC2 (LEAFY COTYLEDON 2)Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings and to reproductive and vegetative organs of mature plants.O.I.C.G.H.G.
348.1100.0430.5At5g59120836030ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
339.1100.0255.7At1g15310838100ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteinsO.I.C.G.H.G.
335.1100.053.2At5g17540831620transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.C.G.H.G.
332.3100.088.6At4g33690829511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFPO.I.C.G.H.G.
328.1100.045.1At5g19710832091-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
322.8100.0222.9At4g25020828605KOW domain-containing protein / D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPOO.I.C.G.H.G.
321.4100.0145.3At1g76820844016GTP binding / GTPaseF:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
313.3100.0344.6At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.



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