Microarray experiments to specifically-expressed genes

GSM ID GSM311290
Assay name Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2
GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2335.5100.0308.9At4g33600829500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOBO.I.C.G.H.G.
2276.2100.0319.7At1g50650841487stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOMO.I.C.G.H.G.
1908.7100.0394.3At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.O.I.C.G.H.G.
1581.7100.0187.6At4g33330829469transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVOO.I.C.G.H.G.
1511.8100.0240.8At3g58740825043CSY1 (CITRATE SYNTHASE 1)Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.O.I.C.G.H.G.
1457.4100.0117.8At1g68510843180LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)F:unknown;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
1356.4100.01007.1At4g28365828952plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFMO.I.C.G.H.G.
1328.7100.0261.9At5g03810831715carboxylesterase/ hydrolase, acting on ester bonds / lipaseF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
1250.5100.0183.6At5g12460831121-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMOO.I.C.G.H.G.
1106.1100.0228.5At1g71250843466GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
1073.2100.0122.8At1g71120843452GLIP6Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
999.6100.0186.5At1g15150838080MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
959.7100.0152.7At1g62340842532ALE1 (ABNORMAL LEAF-SHAPE 1)Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plantsO.I.C.G.H.G.
761.8100.0275.8At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
761.5100.0141.0At5g59590836078UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
724.6100.0367.3At1g48930841315AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
701.6100.0125.3At5g02220831792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
686.4100.0119.0At1g64800842788DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, glutamate catabolic process to succinate;C:cellular_component unknownO.I.C.G.H.G.
659.8100.066.2At2g14690815957endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compoundsEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
611.9100.091.1At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
536.4100.0112.1At2g45830819191DTA2 (DOWNSTREAM TARGET OF AGL15 2)F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVBO.I.C.G.H.G.
536.1100.0128.2At1g043808395352-oxoglutarate-dependent dioxygenase, putativeencodes a protein similar to a 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
513.3100.098.1At1g11420837684agenet domain-containing proteinF:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFVO.I.C.G.H.G.
507.6100.0347.9At1g56170842070NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissuesO.I.C.G.H.G.
441.6100.0360.0At5g40610834060glycerol-3-phosphate dehydrogenase (NAD+) / GPDHF:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPAO.I.C.G.H.G.
437.4100.027.8At1g14687838033AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO.I.C.G.H.G.
434.8100.0857.0At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
424.6100.0149.4At3g49050824066lipase class 3 family protein / calmodulin-binding heat-shock protein, putativeF:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFBO.I.C.G.H.G.
418.0100.098.5At2g15440816036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
414.1100.0320.8At5g44480834475DUR (DEFECTIVE UGE IN ROOT)mutant has Altered lateral root; UDP Glucose EpimeraseO.I.C.G.H.G.
401.0100.0112.1At1g53690841806DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putativeProtein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.O.I.C.G.H.G.
392.4100.0125.3At2g24580816994sarcosine oxidase family proteinF:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
388.2100.0152.2At4g37050829859PLP4 (PATATIN-LIKE PROTEIN 4)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
387.7100.0207.3At5g27200832778ACP5 (acyl carrier protein 5)encodes an acyl carrier proteinO.I.C.G.H.G.
387.6100.051.7At3g52770824443ZPR3 (LITTLE ZIPPER 3)ZPR3 is a small-leucine zipper containing protein that is involved in the establishment of leaf polarity.O.I.C.G.H.G.
378.8100.0172.8At5g07510830644GRP14encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.O.I.C.G.H.G.
355.8100.0609.7At1g12080837760unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
354.5100.0122.7At5g67270836862ATEB1C (microtubule end binding protein 1)encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.O.I.C.G.H.G.
336.7100.085.2At3g55060824672unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
331.0100.050.5At3g46240823769protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVAO.I.C.G.H.G.
315.2100.083.6At3g12020820376kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAVO.I.C.G.H.G.
306.7100.0299.8At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.C.G.H.G.
301.5100.0197.6At1g01900839318SBTI1.1Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.O.I.C.G.H.G.
297.1100.078.1At4g28230828938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
287.5100.0136.3At5g10220830886ANN6 (ANNEXIN ARABIDOPSIS 6)Encodes a calcium-binding protein annexin (AnnAt6).O.I.C.G.H.G.
282.4100.0500.8At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
280.3100.067.1At5g13600831204phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:membrane;PMFO.I.C.G.H.G.
279.3100.01309.3At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
276.6100.071.3At3g27785822399MYB118putative transcription factor (MYB118)O.I.C.G.H.G.
274.4100.0103.5At3g44050823523kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.C.G.H.G.
265.8100.038.6At1g54955841936transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
262.7100.042.3At1g32760840170glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;PMOBFO.I.C.G.H.G.
257.9100.0104.2At2g30470817597HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50ÁM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.O.I.C.G.H.G.
254.1100.072.4At3g15560--O.I.C.G.H.G.
249.1100.0243.0At3g09980820159unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
245.0100.0425.4At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyO.I.C.G.H.G.
241.3100.0105.3At1g64330842739myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAVO.I.C.G.H.G.
233.2100.037.4At3g59850825155polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
232.6100.049.2At3g45000823635VPS24.2F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOABO.I.C.G.H.G.
229.2100.098.5At3g51740824337IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2)encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors.O.I.C.G.H.G.
224.1100.040.2At2g06255815182ELF4-L3 (ELF4-Like 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
221.4100.055.4At1g11070837648-F:unknown;P:unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
220.7100.082.9At5g13790831224AGL15 (AGAMOUS-LIKE 15)AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.O.I.C.G.H.G.
214.6100.0118.3At2g41070818706EEL (ENHANCED EM LEVEL)Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.O.I.C.G.H.G.
213.4100.078.9At4g12700826882unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
204.7100.081.0At2g42110818811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
199.8100.041.5At5g53100835390oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
199.3100.0142.5At3g23090821884-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBAO.I.C.G.H.G.
192.4100.0263.6At5g63530836472ATFP3Farnesylated protein that binds metals.O.I.C.G.H.G.
186.7100.082.3At2g14520815939CBS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
182.5100.067.5At4g30110829134HMA2encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zincO.I.C.G.H.G.
181.9100.048.5At1g23560838966unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
181.5100.082.5At1g74550843796CYP98A9member of CYP98AO.I.C.G.H.G.
175.4100.075.8At5g27550832815ATP binding / microtubule motorF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complexO.I.C.G.H.G.
174.6100.036.6At4g26660828773-F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAVO.I.C.G.H.G.
174.0100.0598.3At4g04460825776aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:endomembrane system;MFOPBO.I.C.G.H.G.
172.4100.0250.6At2g35880818161-F:molecular_function unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
170.7100.099.1At3g43240823399ARID/BRIGHT DNA-binding domain-containing proteinF:protein binding, DNA binding, zinc ion binding;P:unknown;C:intracellular;PMFOO.I.C.G.H.G.
167.0100.044.1At3g45610823703Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
165.5100.039.4At3g11180820289oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
157.999.986.5At3g25110822102AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)Encodes a FatA acyl-ACP thioesteraseO.I.C.G.H.G.
157.299.9100.5At5g05180830400unknown proteinF:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
154.799.974.9At5g01370831905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVO.I.C.G.H.G.
154.199.9111.1At1g05460837047SDE3 (SILENCING DEFECTIVE)Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.O.I.C.G.H.G.
150.899.9239.1At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
150.899.9115.5At1g711708434576-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
150.399.9101.0At3g51280824291male sterility MS5, putativeF:binding;P:unknown;C:cellular_component unknown;OBPAFO.I.C.G.H.G.
145.299.9413.4At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.H.G.
141.799.9124.0At1g21140838710nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAO.I.C.G.H.G.
140.699.9153.0At5g07200830611YAP169encodes a gibberellin 20-oxidase.O.I.C.G.H.G.
140.399.937.3At2g44430819050DNA-binding bromodomain-containing proteinF:DNA binding;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
139.399.970.1At2g46530819264ARF11 (AUXIN RESPONSE FACTOR 11)F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;POMFO.I.C.G.H.G.
137.299.9636.8At5g47550834805cysteine protease inhibitor, putative / cystatin, putativeF:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOBO.I.C.G.H.G.
135.699.9145.8At2g39220818507PLP6 (PATATIN-LIKE PROTEIN 6)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMFO.I.C.G.H.G.
134.299.960.6At2g23430816875ICK1Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1.O.I.C.G.H.G.
131.199.9129.9At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.C.G.H.G.
130.799.9178.6At5g27600832820LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.O.I.C.G.H.G.
130.099.957.2At5g07260830617homeobox protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
129.199.938.0At5g40640834063unknown proteinF:unknown;P:unknown;C:plasma membrane;PMOO.I.C.G.H.G.
127.099.9134.6At5g11230830993organic anion transmembrane transporterF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBAO.I.C.G.H.G.



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