CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM311290

Assay name Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2335.5 100.0 308.9 At4g33600 829500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOB O.I. C.G. H.G.
2276.2 100.0 319.7 At1g50650 841487 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOM O.I. C.G. H.G.
1908.7 100.0 394.3 At3g08900 820039 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3) Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells. O.I. C.G. H.G.
1581.7 100.0 187.6 At4g33330 829469 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVO O.I. C.G. H.G.
1511.8 100.0 240.8 At3g58740 825043 CSY1 (CITRATE SYNTHASE 1) Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds. O.I. C.G. H.G.
1457.4 100.0 117.8 At1g68510 843180 LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42) F:unknown;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
1356.4 100.0 1007.1 At4g28365 828952 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFM O.I. C.G. H.G.
1328.7 100.0 261.9 At5g03810 831715 carboxylesterase/ hydrolase, acting on ester bonds / lipase F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
1250.5 100.0 183.6 At5g12460 831121 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMO O.I. C.G. H.G.
1106.1 100.0 228.5 At1g71250 843466 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
1073.2 100.0 122.8 At1g71120 843452 GLIP6 Contains lipase signature motif and GDSL domain. O.I. C.G. H.G.
999.6 100.0 186.5 At1g15150 838080 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
959.7 100.0 152.7 At1g62340 842532 ALE1 (ABNORMAL LEAF-SHAPE 1) Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plants O.I. C.G. H.G.
761.8 100.0 275.8 At5g57920 835903 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
761.5 100.0 141.0 At5g59590 836078 UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
724.6 100.0 367.3 At1g48930 841315 AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
701.6 100.0 125.3 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
686.4 100.0 119.0 At1g64800 842788 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, glutamate catabolic process to succinate;C:cellular_component unknown O.I. C.G. H.G.
659.8 100.0 66.2 At2g14690 815957 endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
611.9 100.0 91.1 At4g10640 826656 IQD16 (IQ-domain 16) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
536.4 100.0 112.1 At2g45830 819191 DTA2 (DOWNSTREAM TARGET OF AGL15 2) F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVB O.I. C.G. H.G.
536.1 100.0 128.2 At1g04380 839535 2-oxoglutarate-dependent dioxygenase, putative encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
513.3 100.0 98.1 At1g11420 837684 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFV O.I. C.G. H.G.
507.6 100.0 347.9 At1g56170 842070 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues O.I. C.G. H.G.
441.6 100.0 360.0 At5g40610 834060 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA O.I. C.G. H.G.
437.4 100.0 27.8 At1g14687 838033 AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32) F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;P O.I. C.G. H.G.
434.8 100.0 857.0 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
424.6 100.0 149.4 At3g49050 824066 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB O.I. C.G. H.G.
418.0 100.0 98.5 At2g15440 816036 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
414.1 100.0 320.8 At5g44480 834475 DUR (DEFECTIVE UGE IN ROOT) mutant has Altered lateral root; UDP Glucose Epimerase O.I. C.G. H.G.
401.0 100.0 112.1 At1g53690 841806 DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. O.I. C.G. H.G.
392.4 100.0 125.3 At2g24580 816994 sarcosine oxidase family protein F:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
388.2 100.0 152.2 At4g37050 829859 PLP4 (PATATIN-LIKE PROTEIN 4) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
387.7 100.0 207.3 At5g27200 832778 ACP5 (acyl carrier protein 5) encodes an acyl carrier protein O.I. C.G. H.G.
387.6 100.0 51.7 At3g52770 824443 ZPR3 (LITTLE ZIPPER 3) ZPR3 is a small-leucine zipper containing protein that is involved in the establishment of leaf polarity. O.I. C.G. H.G.
378.8 100.0 172.8 At5g07510 830644 GRP14 encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers. O.I. C.G. H.G.
355.8 100.0 609.7 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
354.5 100.0 122.7 At5g67270 836862 ATEB1C (microtubule end binding protein 1) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis. O.I. C.G. H.G.
336.7 100.0 85.2 At3g55060 824672 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
331.0 100.0 50.5 At3g46240 823769 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA O.I. C.G. H.G.
315.2 100.0 83.6 At3g12020 820376 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV O.I. C.G. H.G.
306.7 100.0 299.8 At3g07780 819969 OBE1 (OBERON1) Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. O.I. C.G. H.G.
301.5 100.0 197.6 At1g01900 839318 SBTI1.1 Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide. O.I. C.G. H.G.
297.1 100.0 78.1 At4g28230 828938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
287.5 100.0 136.3 At5g10220 830886 ANN6 (ANNEXIN ARABIDOPSIS 6) Encodes a calcium-binding protein annexin (AnnAt6). O.I. C.G. H.G.
282.4 100.0 500.8 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
280.3 100.0 67.1 At5g13600 831204 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:membrane;PMF O.I. C.G. H.G.
279.3 100.0 1309.3 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
276.6 100.0 71.3 At3g27785 822399 MYB118 putative transcription factor (MYB118) O.I. C.G. H.G.
274.4 100.0 103.5 At3g44050 823523 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
265.8 100.0 38.6 At1g54955 841936 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
262.7 100.0 42.3 At1g32760 840170 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;PMOBF O.I. C.G. H.G.
257.9 100.0 104.2 At2g30470 817597 HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2) HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50�M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain. O.I. C.G. H.G.
254.1 100.0 72.4 At3g15560 - - O.I. C.G. H.G.
249.1 100.0 243.0 At3g09980 820159 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
245.0 100.0 425.4 At1g08560 837378 SYP111 (SYNTAXIN OF PLANTS 111) member of SYP11 Gene Family O.I. C.G. H.G.
241.3 100.0 105.3 At1g64330 842739 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAV O.I. C.G. H.G.
233.2 100.0 37.4 At3g59850 825155 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
232.6 100.0 49.2 At3g45000 823635 VPS24.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOAB O.I. C.G. H.G.
229.2 100.0 98.5 At3g51740 824337 IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2) encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. O.I. C.G. H.G.
224.1 100.0 40.2 At2g06255 815182 ELF4-L3 (ELF4-Like 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
221.4 100.0 55.4 At1g11070 837648 - F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
220.7 100.0 82.9 At5g13790 831224 AGL15 (AGAMOUS-LIKE 15) AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation. O.I. C.G. H.G.
214.6 100.0 118.3 At2g41070 818706 EEL (ENHANCED EM LEVEL) Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo. O.I. C.G. H.G.
213.4 100.0 78.9 At4g12700 826882 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
204.7 100.0 81.0 At2g42110 818811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
199.8 100.0 41.5 At5g53100 835390 oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
199.3 100.0 142.5 At3g23090 821884 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBA O.I. C.G. H.G.
192.4 100.0 263.6 At5g63530 836472 ATFP3 Farnesylated protein that binds metals. O.I. C.G. H.G.
186.7 100.0 82.3 At2g14520 815939 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
182.5 100.0 67.5 At4g30110 829134 HMA2 encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc O.I. C.G. H.G.
181.9 100.0 48.5 At1g23560 838966 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
181.5 100.0 82.5 At1g74550 843796 CYP98A9 member of CYP98A O.I. C.G. H.G.
175.4 100.0 75.8 At5g27550 832815 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex O.I. C.G. H.G.
174.6 100.0 36.6 At4g26660 828773 - F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAV O.I. C.G. H.G.
174.0 100.0 598.3 At4g04460 825776 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:endomembrane system;MFOPB O.I. C.G. H.G.
172.4 100.0 250.6 At2g35880 818161 - F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
170.7 100.0 99.1 At3g43240 823399 ARID/BRIGHT DNA-binding domain-containing protein F:protein binding, DNA binding, zinc ion binding;P:unknown;C:intracellular;PMFO O.I. C.G. H.G.
167.0 100.0 44.1 At3g45610 823703 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
165.5 100.0 39.4 At3g11180 820289 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
157.9 99.9 86.5 At3g25110 822102 AtFaTA (Arabidopsis FatA acyl-ACP thioesterase) Encodes a FatA acyl-ACP thioesterase O.I. C.G. H.G.
157.2 99.9 100.5 At5g05180 830400 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
154.7 99.9 74.9 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
154.1 99.9 111.1 At1g05460 837047 SDE3 (SILENCING DEFECTIVE) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. O.I. C.G. H.G.
150.8 99.9 239.1 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
150.8 99.9 115.5 At1g71170 843457 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein F:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
150.3 99.9 101.0 At3g51280 824291 male sterility MS5, putative F:binding;P:unknown;C:cellular_component unknown;OBPAF O.I. C.G. H.G.
145.2 99.9 413.4 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. C.G. H.G.
141.7 99.9 124.0 At1g21140 838710 nodulin, putative F:unknown;P:biological_process unknown;C:unknown;BOPFA O.I. C.G. H.G.
140.6 99.9 153.0 At5g07200 830611 YAP169 encodes a gibberellin 20-oxidase. O.I. C.G. H.G.
140.3 99.9 37.3 At2g44430 819050 DNA-binding bromodomain-containing protein F:DNA binding;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
139.3 99.9 70.1 At2g46530 819264 ARF11 (AUXIN RESPONSE FACTOR 11) F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;POMF O.I. C.G. H.G.
137.2 99.9 636.8 At5g47550 834805 cysteine protease inhibitor, putative / cystatin, putative F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB O.I. C.G. H.G.
135.6 99.9 145.8 At2g39220 818507 PLP6 (PATATIN-LIKE PROTEIN 6) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF O.I. C.G. H.G.
134.2 99.9 60.6 At2g23430 816875 ICK1 Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1. O.I. C.G. H.G.
131.1 99.9 129.9 At2g27470 817292 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA O.I. C.G. H.G.
130.7 99.9 178.6 At5g27600 832820 LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5. O.I. C.G. H.G.
130.0 99.9 57.2 At5g07260 830617 homeobox protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
129.1 99.9 38.0 At5g40640 834063 unknown protein F:unknown;P:unknown;C:plasma membrane;PMO O.I. C.G. H.G.
127.0 99.9 134.6 At5g11230 830993 organic anion transmembrane transporter F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2335.5	100.0	308.9	At4g33600	829500	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
2276.2	100.0	319.7	At1g50650	841487	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOM	O.I.	C.G.	H.G.
1908.7	100.0	394.3	At3g08900	820039	RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)	Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.	O.I.	C.G.	H.G.
1581.7	100.0	187.6	At4g33330	829469	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVO	O.I.	C.G.	H.G.
1511.8	100.0	240.8	At3g58740	825043	CSY1 (CITRATE SYNTHASE 1)	Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.	O.I.	C.G.	H.G.
1457.4	100.0	117.8	At1g68510	843180	LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)	F:unknown;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
1356.4	100.0	1007.1	At4g28365	828952	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFM	O.I.	C.G.	H.G.
1328.7	100.0	261.9	At5g03810	831715	carboxylesterase/ hydrolase, acting on ester bonds / lipase	F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
1250.5	100.0	183.6	At5g12460	831121	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMO	O.I.	C.G.	H.G.
1106.1	100.0	228.5	At1g71250	843466	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
1073.2	100.0	122.8	At1g71120	843452	GLIP6	Contains lipase signature motif and GDSL domain.	O.I.	C.G.	H.G.
999.6	100.0	186.5	At1g15150	838080	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
959.7	100.0	152.7	At1g62340	842532	ALE1 (ABNORMAL LEAF-SHAPE 1)	Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plants	O.I.	C.G.	H.G.
761.8	100.0	275.8	At5g57920	835903	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
761.5	100.0	141.0	At5g59590	836078	UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
724.6	100.0	367.3	At1g48930	841315	AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
701.6	100.0	125.3	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
686.4	100.0	119.0	At1g64800	842788	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, glutamate catabolic process to succinate;C:cellular_component unknown	O.I.	C.G.	H.G.
659.8	100.0	66.2	At2g14690	815957	endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
611.9	100.0	91.1	At4g10640	826656	IQD16 (IQ-domain 16)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
536.4	100.0	112.1	At2g45830	819191	DTA2 (DOWNSTREAM TARGET OF AGL15 2)	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVB	O.I.	C.G.	H.G.
536.1	100.0	128.2	At1g04380	839535	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
513.3	100.0	98.1	At1g11420	837684	agenet domain-containing protein	F:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFV	O.I.	C.G.	H.G.
507.6	100.0	347.9	At1g56170	842070	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues	O.I.	C.G.	H.G.
441.6	100.0	360.0	At5g40610	834060	glycerol-3-phosphate dehydrogenase (NAD+) / GPDH	F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA	O.I.	C.G.	H.G.
437.4	100.0	27.8	At1g14687	838033	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;P	O.I.	C.G.	H.G.
434.8	100.0	857.0	At5g38160	833796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
424.6	100.0	149.4	At3g49050	824066	lipase class 3 family protein / calmodulin-binding heat-shock protein, putative	F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB	O.I.	C.G.	H.G.
418.0	100.0	98.5	At2g15440	816036	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
414.1	100.0	320.8	At5g44480	834475	DUR (DEFECTIVE UGE IN ROOT)	mutant has Altered lateral root; UDP Glucose Epimerase	O.I.	C.G.	H.G.
401.0	100.0	112.1	At1g53690	841806	DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative	Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.	O.I.	C.G.	H.G.
392.4	100.0	125.3	At2g24580	816994	sarcosine oxidase family protein	F:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
388.2	100.0	152.2	At4g37050	829859	PLP4 (PATATIN-LIKE PROTEIN 4)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
387.7	100.0	207.3	At5g27200	832778	ACP5 (acyl carrier protein 5)	encodes an acyl carrier protein	O.I.	C.G.	H.G.
387.6	100.0	51.7	At3g52770	824443	ZPR3 (LITTLE ZIPPER 3)	ZPR3 is a small-leucine zipper containing protein that is involved in the establishment of leaf polarity.	O.I.	C.G.	H.G.
378.8	100.0	172.8	At5g07510	830644	GRP14	encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.	O.I.	C.G.	H.G.
355.8	100.0	609.7	At1g12080	837760	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
354.5	100.0	122.7	At5g67270	836862	ATEB1C (microtubule end binding protein 1)	encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.	O.I.	C.G.	H.G.
336.7	100.0	85.2	At3g55060	824672	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
331.0	100.0	50.5	At3g46240	823769	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA	O.I.	C.G.	H.G.
315.2	100.0	83.6	At3g12020	820376	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV	O.I.	C.G.	H.G.
306.7	100.0	299.8	At3g07780	819969	OBE1 (OBERON1)	Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.	O.I.	C.G.	H.G.
301.5	100.0	197.6	At1g01900	839318	SBTI1.1	Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.	O.I.	C.G.	H.G.
297.1	100.0	78.1	At4g28230	828938	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
287.5	100.0	136.3	At5g10220	830886	ANN6 (ANNEXIN ARABIDOPSIS 6)	Encodes a calcium-binding protein annexin (AnnAt6).	O.I.	C.G.	H.G.
282.4	100.0	500.8	At1g33055	840201	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
280.3	100.0	67.1	At5g13600	831204	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:membrane;PMF	O.I.	C.G.	H.G.
279.3	100.0	1309.3	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
276.6	100.0	71.3	At3g27785	822399	MYB118	putative transcription factor (MYB118)	O.I.	C.G.	H.G.
274.4	100.0	103.5	At3g44050	823523	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
265.8	100.0	38.6	At1g54955	841936	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
262.7	100.0	42.3	At1g32760	840170	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;PMOBF	O.I.	C.G.	H.G.
257.9	100.0	104.2	At2g30470	817597	HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)	HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50�M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.	O.I.	C.G.	H.G.
254.1	100.0	72.4	At3g15560		-	-	O.I.	C.G.	H.G.
249.1	100.0	243.0	At3g09980	820159	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
245.0	100.0	425.4	At1g08560	837378	SYP111 (SYNTAXIN OF PLANTS 111)	member of SYP11 Gene Family	O.I.	C.G.	H.G.
241.3	100.0	105.3	At1g64330	842739	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAV	O.I.	C.G.	H.G.
233.2	100.0	37.4	At3g59850	825155	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
232.6	100.0	49.2	At3g45000	823635	VPS24.2	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOAB	O.I.	C.G.	H.G.
229.2	100.0	98.5	At3g51740	824337	IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2)	encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors.	O.I.	C.G.	H.G.
224.1	100.0	40.2	At2g06255	815182	ELF4-L3 (ELF4-Like 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
221.4	100.0	55.4	At1g11070	837648	-	F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
220.7	100.0	82.9	At5g13790	831224	AGL15 (AGAMOUS-LIKE 15)	AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.	O.I.	C.G.	H.G.
214.6	100.0	118.3	At2g41070	818706	EEL (ENHANCED EM LEVEL)	Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.	O.I.	C.G.	H.G.
213.4	100.0	78.9	At4g12700	826882	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
204.7	100.0	81.0	At2g42110	818811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
199.8	100.0	41.5	At5g53100	835390	oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
199.3	100.0	142.5	At3g23090	821884	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBA	O.I.	C.G.	H.G.
192.4	100.0	263.6	At5g63530	836472	ATFP3	Farnesylated protein that binds metals.	O.I.	C.G.	H.G.
186.7	100.0	82.3	At2g14520	815939	CBS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
182.5	100.0	67.5	At4g30110	829134	HMA2	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	O.I.	C.G.	H.G.
181.9	100.0	48.5	At1g23560	838966	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
181.5	100.0	82.5	At1g74550	843796	CYP98A9	member of CYP98A	O.I.	C.G.	H.G.
175.4	100.0	75.8	At5g27550	832815	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex	O.I.	C.G.	H.G.
174.6	100.0	36.6	At4g26660	828773	-	F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAV	O.I.	C.G.	H.G.
174.0	100.0	598.3	At4g04460	825776	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:endomembrane system;MFOPB	O.I.	C.G.	H.G.
172.4	100.0	250.6	At2g35880	818161	-	F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
170.7	100.0	99.1	At3g43240	823399	ARID/BRIGHT DNA-binding domain-containing protein	F:protein binding, DNA binding, zinc ion binding;P:unknown;C:intracellular;PMFO	O.I.	C.G.	H.G.
167.0	100.0	44.1	At3g45610	823703	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
165.5	100.0	39.4	At3g11180	820289	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
157.9	99.9	86.5	At3g25110	822102	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	Encodes a FatA acyl-ACP thioesterase	O.I.	C.G.	H.G.
157.2	99.9	100.5	At5g05180	830400	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
154.7	99.9	74.9	At5g01370	831905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
154.1	99.9	111.1	At1g05460	837047	SDE3 (SILENCING DEFECTIVE)	Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.	O.I.	C.G.	H.G.
150.8	99.9	239.1	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
150.8	99.9	115.5	At1g71170	843457	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	F:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
150.3	99.9	101.0	At3g51280	824291	male sterility MS5, putative	F:binding;P:unknown;C:cellular_component unknown;OBPAF	O.I.	C.G.	H.G.
145.2	99.9	413.4	At1g47970	841215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
141.7	99.9	124.0	At1g21140	838710	nodulin, putative	F:unknown;P:biological_process unknown;C:unknown;BOPFA	O.I.	C.G.	H.G.
140.6	99.9	153.0	At5g07200	830611	YAP169	encodes a gibberellin 20-oxidase.	O.I.	C.G.	H.G.
140.3	99.9	37.3	At2g44430	819050	DNA-binding bromodomain-containing protein	F:DNA binding;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
139.3	99.9	70.1	At2g46530	819264	ARF11 (AUXIN RESPONSE FACTOR 11)	F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;POMF	O.I.	C.G.	H.G.
137.2	99.9	636.8	At5g47550	834805	cysteine protease inhibitor, putative / cystatin, putative	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB	O.I.	C.G.	H.G.
135.6	99.9	145.8	At2g39220	818507	PLP6 (PATATIN-LIKE PROTEIN 6)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF	O.I.	C.G.	H.G.
134.2	99.9	60.6	At2g23430	816875	ICK1	Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1.	O.I.	C.G.	H.G.
131.1	99.9	129.9	At2g27470	817292	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA	O.I.	C.G.	H.G.
130.7	99.9	178.6	At5g27600	832820	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.	O.I.	C.G.	H.G.
130.0	99.9	57.2	At5g07260	830617	homeobox protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
129.1	99.9	38.0	At5g40640	834063	unknown protein	F:unknown;P:unknown;C:plasma membrane;PMO	O.I.	C.G.	H.G.
127.0	99.9	134.6	At5g11230	830993	organic anion transmembrane transporter	F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBA	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM311290
Assay name	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2
GSE experiment	GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Microarray experiments to specifically-expressed genes

GSM ID GSM311290 Assay name Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

GSM ID GSM311290

Assay name Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2

GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage