Microarray experiments to specifically-expressed genes

GSM ID GSM311289
Assay name Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1
GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2036.9100.0288.5At4g33600829500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOBO.I.C.G.H.G.
1523.6100.0120.4At1g68510843180LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)F:unknown;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
1415.0100.0177.5At4g33330829469transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVOO.I.C.G.H.G.
1226.4100.0251.6At5g03810831715carboxylesterase/ hydrolase, acting on ester bonds / lipaseF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
1177.5100.0938.3At4g28365828952plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFMO.I.C.G.H.G.
1172.9100.0177.8At5g12460831121-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMOO.I.C.G.H.G.
1103.0100.0228.2At1g71250843466GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
1088.2100.0221.1At1g50650841487stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOMO.I.C.G.H.G.
1011.7100.0162.5At5g59590836078UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
993.0100.0143.2At1g64800842788DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, glutamate catabolic process to succinate;C:cellular_component unknownO.I.C.G.H.G.
969.8100.0197.0At2g24580816994sarcosine oxidase family proteinF:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
859.2100.0264.5At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.O.I.C.G.H.G.
741.7100.0100.2At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
727.5100.0149.3At1g043808395352-oxoglutarate-dependent dioxygenase, putativeencodes a protein similar to a 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
682.2100.0161.8At3g58740825043CSY1 (CITRATE SYNTHASE 1)Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.O.I.C.G.H.G.
680.7100.0146.0At1g53690841806DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putativeProtein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.O.I.C.G.H.G.
678.8100.0260.4At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
669.5100.097.0At1g71120843452GLIP6Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
655.3100.0349.3At1g48930841315AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
644.7100.0143.8At2g42110818811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
625.1100.0386.1At1g56170842070NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissuesO.I.C.G.H.G.
624.2100.0123.2At1g62340842532ALE1 (ABNORMAL LEAF-SHAPE 1)Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plantsO.I.C.G.H.G.
594.6100.0158.2At2g30470817597HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50ÁM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.O.I.C.G.H.G.
564.3100.0140.1At1g15150838080MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
556.0100.031.3At1g14687838033AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO.I.C.G.H.G.
468.7100.0370.9At5g40610834060glycerol-3-phosphate dehydrogenase (NAD+) / GPDHF:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPAO.I.C.G.H.G.
443.5100.0169.3At5g10220830886ANN6 (ANNEXIN ARABIDOPSIS 6)Encodes a calcium-binding protein annexin (AnnAt6).O.I.C.G.H.G.
429.9100.099.9At2g15440816036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
417.5100.096.7At5g02220831792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
415.3100.0837.5At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
403.1100.0211.4At5g27200832778ACP5 (acyl carrier protein 5)encodes an acyl carrier proteinO.I.C.G.H.G.
379.9100.050.8At1g32760840170glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;PMOBFO.I.C.G.H.G.
357.2100.091.5At2g45830819191DTA2 (DOWNSTREAM TARGET OF AGL15 2)F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVBO.I.C.G.H.G.
356.6100.0102.0At4g12700826882unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
344.9100.0600.3At1g12080837760unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
339.2100.085.5At3g55060824672unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
320.3100.0129.8At3g49050824066lipase class 3 family protein / calmodulin-binding heat-shock protein, putativeF:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFBO.I.C.G.H.G.
317.3100.045.9At2g14690815957endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compoundsEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
310.6100.0277.8At5g44480834475DUR (DEFECTIVE UGE IN ROOT)mutant has Altered lateral root; UDP Glucose EpimeraseO.I.C.G.H.G.
305.3100.045.9At3g52770824443ZPR3 (LITTLE ZIPPER 3)ZPR3 is a small-leucine zipper containing protein that is involved in the establishment of leaf polarity.O.I.C.G.H.G.
305.1100.0113.8At5g67270836862ATEB1C (microtubule end binding protein 1)encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.O.I.C.G.H.G.
302.7100.041.2At1g54955841936transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
301.2100.050.9At5g53100835390oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
301.1100.0517.1At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
300.3100.069.5At5g13600831204phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:membrane;PMFO.I.C.G.H.G.
272.5100.092.1At5g13790831224AGL15 (AGAMOUS-LIKE 15)AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.O.I.C.G.H.G.
268.0100.043.9At2g06255815182ELF4-L3 (ELF4-Like 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
267.6100.050.1At3g11180820289oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
263.2100.079.2At3g01070821257plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
245.2100.0241.1At3g09980820159unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
238.8100.072.8At3g12020820376kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAVO.I.C.G.H.G.
238.8100.066.2At3g27785822399MYB118putative transcription factor (MYB118)O.I.C.G.H.G.
237.1100.0418.4At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyO.I.C.G.H.G.
236.1100.092.5At5g01370831905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVO.I.C.G.H.G.
226.5100.0257.6At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.C.G.H.G.
213.8100.093.8At5g33300833303chromosome-associated kinesin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
206.1100.097.3At1g64330842739myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAVO.I.C.G.H.G.
197.4100.0108.6At4g37050829859PLP4 (PATATIN-LIKE PROTEIN 4)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
196.4100.01098.0At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
193.1100.0158.2At1g01900839318SBTI1.1Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.O.I.C.G.H.G.
189.8100.0102.4At2g41820818781leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
186.8100.0137.9At3g23090821884-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBAO.I.C.G.H.G.
184.8100.0229.4At5g15530831406BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,O.I.C.G.H.G.
180.6100.0256.5At2g35880818161-F:molecular_function unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
173.7100.051.1At5g28910833014unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMOO.I.C.G.H.G.
173.0100.0451.2At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.H.G.
171.4100.050.5At5g52330835309meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFMOO.I.C.G.H.G.
170.1100.089.8At3g25110822102AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)Encodes a FatA acyl-ACP thioesteraseO.I.C.G.H.G.
170.0100.0122.7At1g711708434576-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
167.0100.0103.6At5g05180830400unknown proteinF:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
162.899.9132.9At1g21140838710nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAO.I.C.G.H.G.
160.299.976.2At2g14520815939CBS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
160.099.9149.0At5g23890832454-F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAVO.I.C.G.H.G.
158.199.9238.9At5g63530836472ATFP3Farnesylated protein that binds metals.O.I.C.G.H.G.
156.799.950.8At1g03055838334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
149.599.9134.4At1g15910838161XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
149.599.922.6At3g52970824463CYP76G1member of CYP76GO.I.C.G.H.G.
149.199.9104.0At1g17140838284tropomyosin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
147.699.982.9At5g04620830339ATBIOF (BIOTIN F)The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.O.I.C.G.H.G.
147.199.9659.4At5g47550834805cysteine protease inhibitor, putative / cystatin, putativeF:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOBO.I.C.G.H.G.
146.099.997.5At2g41070818706EEL (ENHANCED EM LEVEL)Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.O.I.C.G.H.G.
146.099.974.0At1g74550843796CYP98A9member of CYP98AO.I.C.G.H.G.
143.599.951.9At1g11420837684agenet domain-containing proteinF:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFVO.I.C.G.H.G.
140.499.953.8At3g15560--O.I.C.G.H.G.
137.899.954.9At1g04030839326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVAO.I.C.G.H.G.
135.799.958.5At5g07260830617homeobox protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
135.199.991.8At2g07690815415minichromosome maintenance family protein / MCM family proteinMember of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.O.I.C.G.H.G.
134.099.932.2At3g46240823769protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVAO.I.C.G.H.G.
132.899.968.3At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
132.399.9148.5At5g07200830611YAP169encodes a gibberellin 20-oxidase.O.I.C.G.H.G.
131.299.9136.7At5g11230830993organic anion transmembrane transporterF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBAO.I.C.G.H.G.
130.199.971.3At3g44050823523kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.C.G.H.G.
129.699.927.9At3g59850825155polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
129.499.931.5At4g26660828773-F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAVO.I.C.G.H.G.
128.799.945.4At3g45130823649LAS1F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMAO.I.C.G.H.G.
126.899.937.7At5g40640834063unknown proteinF:unknown;P:unknown;C:plasma membrane;PMOO.I.C.G.H.G.
125.599.989.1At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
125.499.955.9At4g30110829134HMA2encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zincO.I.C.G.H.G.
125.299.9100.2At1g05460837047SDE3 (SILENCING DEFECTIVE)Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.O.I.C.G.H.G.
125.099.980.6At5g47690834820bindingF:binding;P:biological_process unknown;C:mitochondrion, nucleus, chloroplast;MOFPBVAO.I.C.G.H.G.



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