Microarray experiments to specifically-expressed genes

GSM ID GSM311288
Assay name Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2
GSE experiment GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
925.6100.0762.4At1g04660839454glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
648.6100.0268.2At5g27200832778ACP5 (acyl carrier protein 5)encodes an acyl carrier proteinO.I.C.G.H.G.
414.2100.096.9At1g67590843080remorin family proteinF:DNA binding;P:biological_process unknown;C:nucleus;OPBMFVAO.I.C.G.H.G.
406.4100.0291.6At3g57930824962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVO.I.C.G.H.G.
357.2100.0323.8At5g40610834060glycerol-3-phosphate dehydrogenase (NAD+) / GPDHF:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPAO.I.C.G.H.G.
288.9100.0323.7At5g60030836125unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
277.0100.092.8At5g13790831224AGL15 (AGAMOUS-LIKE 15)AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.O.I.C.G.H.G.
276.7100.0182.9At1g15910838161XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
214.8100.0712.8At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
206.1100.0150.3At1g73177843651BNS (BONSAI)The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.O.I.C.G.H.G.
197.7100.094.0At5g23680832433sterile alpha motif (SAM) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVO.I.C.G.H.G.
184.5100.061.7At3g15560--O.I.C.G.H.G.
184.1100.0109.5At2g41070818706EEL (ENHANCED EM LEVEL)Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.O.I.C.G.H.G.
183.5100.073.1At4g12700826882unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
176.8100.0319.6At1g72440843576EDA25 (embryo sac development arrest 25)F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVAO.I.C.G.H.G.
175.6100.0112.9At1g17140838284tropomyosin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
172.0100.061.0At5g22810832344GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
166.7100.0163.3At2g42190818819unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
164.4100.0106.1At1g06420837153unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
160.599.996.7At5g01075831885beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:endomembrane system, beta-galactosidase complex;PO.I.C.G.H.G.
158.499.9203.4At1g65090842817unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
158.399.978.6At3g44050823523kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.C.G.H.G.
155.499.980.2At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.C.G.H.G.
150.799.9149.5At1g68790843210LINC3 (LITTLE NUCLEI3)F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAVO.I.C.G.H.G.
147.899.926.5At3g25440822128RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;PMOFVBAO.I.C.G.H.G.
146.699.9106.8At5g50740835146metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
143.599.9233.2At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
142.999.9410.1At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.H.G.
142.499.9257.6At3g17170820974RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVAO.I.C.G.H.G.
139.099.975.0At5g16950831558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
137.599.978.9At4g14695827120unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;MFPOO.I.C.G.H.G.
136.399.982.5At3g14900820719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVAO.I.C.G.H.G.
129.999.9258.9At1g15340838103MBD10Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.O.I.C.G.H.G.
126.699.9127.7At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.C.G.H.G.
125.499.970.6At3g29310822589calmodulin-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVO.I.C.G.H.G.
124.199.9188.0At5g15530831406BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,O.I.C.G.H.G.
123.299.948.1At1g11420837684agenet domain-containing proteinF:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFVO.I.C.G.H.G.
121.099.9105.6At5g55670835661RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVAO.I.C.G.H.G.
119.499.9155.5At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVO.I.C.G.H.G.
117.299.987.7At4g00270827164DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:chloroplast;POMO.I.C.G.H.G.
116.699.991.0At3g51270824290ATP binding / catalytic/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
116.199.9193.2At2g41650818763unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
114.699.9293.3At2g34700818035pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
114.499.9111.4At2g37400818316chloroplast lumen common family proteinF:binding;P:biological_process unknown;C:mitochondrion, chloroplast thylakoid lumen, plastid, chloroplast envelope;BOAMPFO.I.C.G.H.G.
114.399.988.0At3g50550824219unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVAO.I.C.G.H.G.
112.899.9194.1At1g44810841045transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
112.799.9103.9At3g19650821502cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
112.099.9139.8At2g11890815664adenylate cyclaseadenylate cyclaseO.I.C.G.H.G.
110.999.977.4At1g78430844179-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
110.799.9127.6At2g13690815853PRLI-interacting factor, putativeF:transcription regulator activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
109.299.9230.2At2g37630818340AS1 (ASYMMETRIC LEAVES 1)Encodes a MYB-domain protein involved in specification of the leaf proximodistal axis. Mutation results in lobed and dissected leaves with a characteristic asymmetry. Homologous to the Antirrhinum PHANTASTICA (PHAN) and maize ROUGH SHEATH2 (RS2) genes Asymmetric placement of auxin response at the distal leaf tip precedes visible asymmetric leaf growth. Acts alongside AXR1 to exclude BP expression in leaves and with PIN1 to repress BP and promote lateral organ growth. Interacts physically with AS2 to form a complex that binds to the BP promoter and silences BP.O.I.C.G.H.G.
103.499.9102.4At4g13050826919acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putativeF:acyl carrier activity;P:fatty acid biosynthetic process;C:chloroplast;BPOMO.I.C.G.H.G.
102.499.9118.4At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
101.699.9114.8At1g21560838757unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.C.G.H.G.
101.399.979.9At5g06350830523bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
101.099.9211.1At3g5866082503560S ribosomal protein-relatedF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAVO.I.C.G.H.G.
100.699.982.6At3g51280824291male sterility MS5, putativeF:binding;P:unknown;C:cellular_component unknown;OBPAFO.I.C.G.H.G.
100.099.9119.8At5g55660835660-F:unknown;P:unknown;C:mitochondrion;MOFBPVAO.I.C.G.H.G.
97.999.925.8At1g32760840170glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;PMOBFO.I.C.G.H.G.
96.699.943.9At2g47230819336agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
95.699.9212.3At5g61310836252cytochrome c oxidase subunit Vc, putative / COX5C, putativeF:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;PO.I.C.G.H.G.
91.499.9215.2At1g30530839933UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1)The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetinO.I.C.G.H.G.
91.199.914.3At5g16790831542-F:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
90.799.9111.6At5g46280834670DNA replication licensing factor, putativeF:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus;MOFPABVO.I.C.G.H.G.
90.699.9117.1At4g08460826405protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
90.599.9112.1At5g23890832454-F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAVO.I.C.G.H.G.
89.999.967.3At5g50770835149AtHSD6 (hydroxysteroid dehydrogenase 6)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
89.399.956.0At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
86.599.969.0At4g00820828002iqd17 (IQ-domain 17)F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVBO.I.C.G.H.G.
85.399.944.0At3g13190820509myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
84.499.9101.2At2g07739815412-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
83.599.9182.9At1g77590844094LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.O.I.C.G.H.G.
83.599.946.4At2g18520816367pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:membrane;POMFBAO.I.C.G.H.G.
83.499.9147.2At1g15940838164bindingF:binding;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
83.199.941.4At2g25420817080-F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MOFBPAO.I.C.G.H.G.
82.599.965.5At5g47690834820bindingF:binding;P:biological_process unknown;C:mitochondrion, nucleus, chloroplast;MOFPBVAO.I.C.G.H.G.
82.399.936.2At1g03830839398guanylate-binding family proteinF:GTP binding, GTPase activity;P:immune response;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
81.399.9150.3At3g52920824458unknown proteinF:unknown;P:unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
80.799.9138.3At3g09980820159unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
80.199.956.5At5g57810835890TET15 (TETRASPANIN15)Member of TETRASPANIN familyO.I.C.G.H.G.
80.199.951.5At1g52500841681ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1)Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1.O.I.C.G.H.G.
80.099.968.3At1g23000838908heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFBO.I.C.G.H.G.
78.199.9128.6At2g40650818660pre-mRNA splicing factor PRP38 family proteinF:binding;P:RNA processing;C:cellular_component unknown;MBOFPVAO.I.C.G.H.G.
77.599.9150.7At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.C.G.H.G.
76.699.966.3At3g49240824085emb1796 (embryo defective 1796)F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBAO.I.C.G.H.G.
75.699.9207.2At4g23800828480high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
74.999.9135.3At5g65880836717unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
74.199.945.2At1g75190843856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFVPBAO.I.C.G.H.G.
73.499.9128.9At3g22660821837rRNA processing protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPO.I.C.G.H.G.
71.499.941.8At5g44700834499GSO2 (GASSHO 2)Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.O.I.C.G.H.G.
70.899.984.6At3g48670824027XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:response to cadmium ion;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
70.199.912.1At5g65820836711pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAO.I.C.G.H.G.
68.799.9158.9At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPO.I.C.G.H.G.
68.199.959.6At2g06210815177ELF8 (EARLY FLOWERING 8)Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.O.I.C.G.H.G.
67.399.853.6At2g27170817259TTN7 (TITAN7)cohesinO.I.C.G.H.G.
67.199.822.7At4g26660828773-F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAVO.I.C.G.H.G.
66.199.853.5At1g63650842669EGL3 (ENHANCER OF GLABRA 3)Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.O.I.C.G.H.G.
65.399.8251.6At2g22080816743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVAO.I.C.G.H.G.
64.799.836.4At4g28230828938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
64.299.827.5At3g49900824152BTB/POZ domain-containing proteinF:protein binding;P:unknown;C:unknown;POO.I.C.G.H.G.



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