Microarray experiments to specifically-expressed genes

GSM ID GSM311285
Assay name Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1
GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
721.4100.0149.3At4g32170829349CYP96A2member of CYP96AO.I.C.G.H.G.
690.9100.0283.1At4g21630828250subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
431.2100.053.0At3g14520820677terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
343.6100.0408.4At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
282.4100.0116.4At3g02670821280proline-rich family proteinF:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVAO.I.C.G.H.G.
278.7100.0519.7At2g22080816743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVAO.I.C.G.H.G.
268.0100.080.9At5g44700834499GSO2 (GASSHO 2)Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.O.I.C.G.H.G.
260.8100.0616.0At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
257.9100.0482.1At2g38900818474serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
246.0100.0175.2At5g56300835729GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.O.I.C.G.H.G.
245.8100.0113.6At1g08810837403MYB60 (myb domain protein 60)putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.O.I.C.G.H.G.
244.3100.082.2At5g35550833520TT2 (TRANSPARENT TESTA 2)TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.O.I.C.G.H.G.
242.5100.0195.8At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
233.2100.075.9At5g41610834163ATCHX18member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
227.6100.0163.1At3g58780825047SHP1 (SHATTERPROOF 1)One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.O.I.C.G.H.G.
218.4100.0911.3At1g72260843558THI2.1 (THIONIN 2.1)Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
212.2100.0422.4At3g234503768908unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane systemO.I.C.G.H.G.
211.1100.069.6At1g17260838297AHA10 (Autoinhibited H(+)-ATPase isoform 10)belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification processO.I.C.G.H.G.
199.4100.048.5At3g49900824152BTB/POZ domain-containing proteinF:protein binding;P:unknown;C:unknown;POO.I.C.G.H.G.
194.9100.0223.6At2g326903768391GRP23 (GLYCINE-RICH PROTEIN 23)Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.O.I.C.G.H.G.
188.4100.091.7At5g23680832433sterile alpha motif (SAM) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVO.I.C.G.H.G.
188.0100.0910.1At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
178.9100.0279.1At5g09370830796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
167.6100.0291.4At1g30530839933UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1)The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetinO.I.C.G.H.G.
163.599.9197.1At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesO.I.C.G.H.G.
162.699.9170.1At1g24540839069CYP86C1member of CYP86CO.I.C.G.H.G.
161.099.9232.9At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
157.699.9305.7At4g35725829725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
146.699.955.1At1g20550838643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
145.199.9231.5At3g20520821598SVL3 (SHV3-LIKE 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMO.I.C.G.H.G.
145.099.9338.0At2g077113768480-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
143.399.916.1At1g34575840361FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
141.799.985.5At4g35840829738zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
139.599.977.0At3g215008217041-deoxy-D-xylulose-5-phosphate synthaseEncodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.O.I.C.G.H.G.
136.999.988.9At5g23570832422SGS3 (SUPPRESSOR OF GENE SILENCING 3)Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.O.I.C.G.H.G.
134.599.949.6At3g13540820556ATMYB5 (MYB DOMAIN PROTEIN 5)Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).O.I.C.G.H.G.
131.899.951.4At4g25835828689AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
131.299.995.6At5g60140836136transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
130.599.9110.2At4g36920829845AP2 (APETALA 2)Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.O.I.C.G.H.G.
128.799.973.5At1g49800841403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
128.699.9162.6At2g42830818883SHP2 (SHATTERPROOF 2)AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).O.I.C.G.H.G.
128.399.958.1At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
127.899.993.6At1g06420837153unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
127.399.9558.8At2g30810817632gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
124.999.9414.0At2g07698815374ATP synthase alpha chain, mitochondrial, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAFO.I.C.G.H.G.
120.199.9358.0At5g53880835469unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plasma membrane;MOFPBAVO.I.C.G.H.G.
119.099.9176.6At2g07687815364cytochrome c oxidase subunit 3F:cytochrome-c oxidase activity;P:mitochondrial electron transport, cytochrome c to oxygen;C:membrane;MOBPFAO.I.C.G.H.G.
118.699.951.3At5g13670831212nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
118.499.9109.8At1g12330837787unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PFOMO.I.C.G.H.G.
117.899.986.8At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
117.099.922.6At5g06070830494RBE (RABBIT EARS)Isolated as a mutation defective in petal development with specific effects on adaxial petals which are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus.O.I.C.G.H.G.
116.999.9117.7At1g26930839583kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFAO.I.C.G.H.G.
114.899.952.7At5g56510835752APUM12 (ARABIDOPSIS PUMILIO 12)F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
112.799.9364.2At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.H.G.
110.099.9370.0At5g39280833924ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
108.999.998.7At3g21270821681ADOF2Encodes Dof zinc finger protein adof2.O.I.C.G.H.G.
106.299.946.2At2g28870817436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
104.799.9273.3At2g44540819062AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
103.999.995.7At5g44080834431bZIP transcription factor family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFVO.I.C.G.H.G.
103.199.9230.6At3g29075822552glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
101.999.9184.5At1g44810841045transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
100.499.9192.2At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPO.I.C.G.H.G.
100.299.9171.4At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.C.G.H.G.
96.999.9131.9At3g05460819711sporozoite surface protein-relatedF:unknown;P:unknown;C:endomembrane system;MOBPO.I.C.G.H.G.
95.899.944.0At4g19380827679alcohol oxidase-relatedF:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
94.599.9103.5At5g25220832593KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordiaO.I.C.G.H.G.
94.399.914.5At5g16790831542-F:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
93.199.932.1At1g66460842964protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
92.799.9137.1At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVO.I.C.G.H.G.
92.599.9113.3At5g23890832454-F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAVO.I.C.G.H.G.
91.999.941.2At1g02940839479GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
90.399.9325.5At5g42800834291DFR (DIHYDROFLAVONOL 4-REDUCTASE)dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.O.I.C.G.H.G.
90.399.978.2At3g50550824219unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVAO.I.C.G.H.G.
88.999.9514.7At2g07671815343H+-transporting two-sector ATPase, C subunit family proteinF:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFPO.I.C.G.H.G.
88.199.9212.9At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.O.I.C.G.H.G.
87.499.9192.3At2g07707815382hydrogen ion transmembrane transporter/ hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substancesF:hydrogen ion transmembrane transporter activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;P:ATP synthesis coupled proton transport;C:mitochondrion, vacuole, membrane;POO.I.C.G.H.G.
86.499.945.2At1g12550837811oxidoreductase family proteinF:in 6 functions;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.C.G.H.G.
86.099.990.8At3g19650821502cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
84.599.9179.0At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
84.499.990.6At2g30080817559ZIP6member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.O.I.C.G.H.G.
83.899.9118.9At1g62990842602KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.O.I.C.G.H.G.
83.599.9444.3At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
81.799.971.8At5g14130831263peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
81.199.993.3At2g35760818148integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
78.799.927.7At5g46540834697PGP7 (P-GLYCOPROTEIN 7)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
77.899.9107.8At5g19090832028heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVAO.I.C.G.H.G.
77.699.9137.7At5g65880836717unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
77.299.9209.4At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
76.799.934.6At1g09440837467protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
74.699.980.9At1g78090844144ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE)homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesO.I.C.G.H.G.
73.799.9228.6At1g12180837771-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
73.799.941.6At5g25580832633-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
73.099.973.0At2g22620816793lyaseF:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBOO.I.C.G.H.G.
71.499.953.7At5g16950831558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
70.699.968.1At4g00270827164DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:chloroplast;POMO.I.C.G.H.G.
70.499.9224.6At2g076993768015-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
70.099.9206.6At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
69.099.9163.5At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.O.I.C.G.H.G.
68.899.953.8At2g30470817597HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50ÁM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.O.I.C.G.H.G.
68.799.994.1At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.C.G.H.G.



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