Microarray experiments to specifically-expressed genes

GSM ID GSM311282
Assay name Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2
GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1588.8100.0133.4At1g63960842699unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1561.4100.0309.9At1g24000839012Bet v I allergen family proteinF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
1483.8100.0286.3At4g37650829919SHR (SHORT ROOT)Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.O.I.C.G.H.G.
1280.4100.0174.5At1g51000841522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1154.8100.0610.9At3g13630820567unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
1053.4100.0531.5At3g57250824892emsy N terminus domain-containing protein / ENT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
1015.9100.0848.9At1g12180837771-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
957.4100.0372.9At4g22050828294aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPO.I.C.G.H.G.
801.5100.0121.4At1g51300841553acyl-protein thioesterase-relatedF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBOO.I.C.G.H.G.
763.7100.0150.3At5g40140834011armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex, chloroplast;PMFOBO.I.C.G.H.G.
737.4100.0133.5At5g56510835752APUM12 (ARABIDOPSIS PUMILIO 12)F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
671.0100.0242.6At1g78090844144ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE)homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesO.I.C.G.H.G.
605.2100.0181.7At3g14780820706-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAVO.I.C.G.H.G.
534.5100.0152.6At3g21840821738ASK7 (ARABIDOPSIS SKP1-LIKE 7)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOVO.I.C.G.H.G.
508.9100.0207.7At1g31290840017PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.C.G.H.G.
502.5100.0185.5At1g06420837153unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
501.1100.0262.9At1g20680838656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POBMO.I.C.G.H.G.
486.8100.0175.2At5g14130831263peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
465.6100.0671.6At2g22080816743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVAO.I.C.G.H.G.
461.2100.070.2At1g52440841675-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
458.7100.076.0At3g24230822010pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
437.0100.0134.2At5g54660835555heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.C.G.H.G.
413.1100.0313.2At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesO.I.C.G.H.G.
408.4100.057.5At4g02670828206AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPFO.I.C.G.H.G.
401.4100.0165.0At4g22400828335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
397.9100.066.3At3g11870820360protein kinase-relatedF:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVAO.I.C.G.H.G.
397.4100.0126.1At5g18090831636transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
375.8100.069.3At1g24010839013-F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
372.1100.051.0At3g21860821740ASK10 (ARABIDOPSIS SKP1-LIKE 10)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVO.I.C.G.H.G.
364.3100.0207.7At1g26930839583kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFAO.I.C.G.H.G.
363.8100.033.1At1g21950838798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
360.7100.0431.3At3g29075822552glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
346.5100.0102.9At1g66360842954C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
342.4100.0292.2At3g04280819583ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.O.I.C.G.H.G.
341.5100.0199.1At4g21630828250subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
337.3100.0153.3At5g60140836136transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
315.8100.0175.3At1g61350842429armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
309.9100.0252.5At2g42830818883SHP2 (SHATTERPROOF 2)AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).O.I.C.G.H.G.
307.5100.083.9At1g77660844102MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFO.I.C.G.H.G.
296.0100.086.6At5g40970834099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
292.9100.0182.2At5g25220832593KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordiaO.I.C.G.H.G.
287.3100.0205.4At2g16890816190UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PO.I.C.G.H.G.
270.2100.0230.4At1g61090842401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
261.4100.073.5At3g54390824605transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBFOMO.I.C.G.H.G.
260.3100.084.8At5g35550833520TT2 (TRANSPARENT TESTA 2)TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.O.I.C.G.H.G.
255.2100.0129.4At4g00270827164DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:chloroplast;POMO.I.C.G.H.G.
239.7100.0167.4At3g58780825047SHP1 (SHATTERPROOF 1)One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.O.I.C.G.H.G.
238.0100.0200.4At1g62990842602KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.O.I.C.G.H.G.
237.0100.068.8At4g29650829086cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseF:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPOO.I.C.G.H.G.
235.9100.083.7At1g32630840157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
233.1100.0279.0At1g44810841045transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
230.0100.0295.2At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
223.8100.0419.9At2g077113768480-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
218.8100.041.1At1g63950842698heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
210.6100.0215.1At5g40980834100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
205.1100.0111.2At3g14570820683ATGSL04 (glucan synthase-like 4)encodes a protein similar to callose synthaseO.I.C.G.H.G.
204.4100.091.4At2g41550818753transcription termination factorF:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
204.2100.0177.3At4g25020828605KOW domain-containing protein / D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPOO.I.C.G.H.G.
201.1100.037.6At1g22980838905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
200.6100.0116.6At3g50550824219unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVAO.I.C.G.H.G.
199.5100.0160.3At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.C.G.H.G.
196.6100.0104.7At1g74055843745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
193.9100.0231.7At5g19900832112PRLI-interacting factor, putativeF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVAO.I.C.G.H.G.
191.4100.049.1At1g52470841678hydrolaseF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
191.2100.0133.4At4g36920829845AP2 (APETALA 2)Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.O.I.C.G.H.G.
190.9100.0671.9At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
186.1100.044.3At5g17130831577cysteine-type peptidaseF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
184.1100.0218.6At1g15940838164bindingF:binding;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
183.4100.052.1At4g29570829078cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPOO.I.C.G.H.G.
182.0100.058.0At5g66660836798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
180.4100.081.3At2g29710817521UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
179.0100.020.0At5g16790831542-F:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
178.9100.061.4At1g80810844420bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
177.1100.0133.8At1g64060842710ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.O.I.C.G.H.G.
174.2100.095.7At3g49050824066lipase class 3 family protein / calmodulin-binding heat-shock protein, putativeF:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFBO.I.C.G.H.G.
173.8100.078.1At3g21830821737ASK8 (ARABIDOPSIS SKP1-LIKE 8)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVO.I.C.G.H.G.
170.1100.0223.3At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.C.G.H.G.
168.9100.0210.4At2g07687815364cytochrome c oxidase subunit 3F:cytochrome-c oxidase activity;P:mitochondrial electron transport, cytochrome c to oxygen;C:membrane;MOBPFAO.I.C.G.H.G.
168.0100.042.1At1g13790837939XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
167.3100.072.5At2g27390817284proline-rich family proteinF:structural constituent of cell wall;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
166.4100.0307.5At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
166.2100.057.8At2g28870817436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
164.9100.078.4At1g14790838044RDR1 (RNA-DEPENDENT RNA POLYMERASE 1)Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.O.I.C.G.H.G.
164.9100.022.4At1g73850843721structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBVO.I.C.G.H.G.
164.8100.068.4At2g46410819249CPC (CAPRICE)Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.O.I.C.G.H.G.
164.5100.0252.5At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.O.I.C.G.H.G.
164.199.9133.2At5g24580832529copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
163.899.9235.5At1g28420839740HB-1 (homeobox-1)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVAO.I.C.G.H.G.
163.499.9115.9At4g31360829263selenium bindingF:selenium binding;P:cell redox homeostasis;C:unknown;MOPFBO.I.C.G.H.G.
155.699.988.8At5g46730834716glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
155.599.9328.9At5g24800832549BZIP9 (BASIC LEUCINE ZIPPER 9)Encodes bZIP protein BZO2H2.O.I.C.G.H.G.
153.199.998.3At5g06350830523bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
152.999.959.9At5g25580832633-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
151.699.970.9At1g52500841681ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1)Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1.O.I.C.G.H.G.
151.299.9246.3At3g10590820227myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMO.I.C.G.H.G.
151.099.952.6At1g28520839752VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
150.299.9129.9At1g01040839574DCL1 (DICER-LIKE 1)Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.O.I.C.G.H.G.
149.399.9191.0At5g65880836717unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
146.699.9102.5At4g17950827520DNA-binding family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVO.I.C.G.H.G.
145.199.9117.9At3g19650821502cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage