CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM311281

Assay name Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1

GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1450.1 100.0 459.0 At4g22050 828294 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOP O.I. C.G. H.G.
1297.5 100.0 282.5 At1g24000 839012 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
1178.9 100.0 562.3 At3g57250 824892 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
996.8 100.0 105.6 At1g63960 842699 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
969.6 100.0 151.9 At1g51000 841522 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
954.7 100.0 555.5 At3g13630 820567 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
809.8 100.0 210.2 At3g14780 820706 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV O.I. C.G. H.G.
758.2 100.0 149.8 At5g40140 834011 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex, chloroplast;PMFOB O.I. C.G. H.G.
749.1 100.0 728.9 At1g12180 837771 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
697.6 100.0 218.6 At1g06420 837153 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB O.I. C.G. H.G.
588.6 100.0 227.2 At1g78090 844144 ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE) homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases O.I. C.G. H.G.
541.2 100.0 147.2 At5g18090 831636 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
531.1 100.0 717.3 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA O.I. C.G. H.G.
487.2 100.0 237.8 At4g21630 828250 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
455.0 100.0 60.7 At4g02670 828206 AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF O.I. C.G. H.G.
446.4 100.0 325.6 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
435.5 100.0 109.7 At5g35550 833520 TT2 (TRANSPARENT TESTA 2) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
412.2 100.0 151.6 At1g74055 843745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
401.9 100.0 366.4 At1g44810 841045 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
399.7 100.0 217.5 At1g26930 839583 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA O.I. C.G. H.G.
389.0 100.0 190.3 At4g36920 829845 AP2 (APETALA 2) Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner. O.I. C.G. H.G.
384.4 100.0 230.3 At1g20680 838656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POBM O.I. C.G. H.G.
375.1 100.0 305.9 At3g04280 819583 ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators. O.I. C.G. H.G.
371.3 100.0 51.0 At3g21860 821740 ASK10 (ARABIDOPSIS SKP1-LIKE 10) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
363.1 100.0 175.4 At1g31290 840017 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. C.G. H.G.
362.5 100.0 432.4 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
352.3 100.0 32.8 At1g73850 843721 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV O.I. C.G. H.G.
351.1 100.0 89.7 At1g77660 844102 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF O.I. C.G. H.G.
337.0 100.0 121.1 At3g21840 821738 ASK7 (ARABIDOPSIS SKP1-LIKE 7) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV O.I. C.G. H.G.
333.3 100.0 194.4 At5g25220 832593 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia O.I. C.G. H.G.
327.5 100.0 259.5 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
323.4 100.0 64.2 At1g24010 839013 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
322.4 100.0 133.5 At4g37650 829919 SHR (SHORT ROOT) Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. O.I. C.G. H.G.
320.5 100.0 55.3 At3g25855 822180 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
312.2 100.0 165.9 At5g44080 834431 bZIP transcription factor family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV O.I. C.G. H.G.
299.9 100.0 134.5 At3g14570 820683 ATGSL04 (glucan synthase-like 4) encodes a protein similar to callose synthase O.I. C.G. H.G.
291.5 100.0 138.3 At4g00270 827164 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM O.I. C.G. H.G.
284.2 100.0 166.3 At1g61350 842429 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
278.7 100.0 71.6 At1g51300 841553 acyl-protein thioesterase-related F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBO O.I. C.G. H.G.
278.3 100.0 46.3 At1g63950 842698 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
266.1 100.0 473.0 At3g23450 3768908 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system O.I. C.G. H.G.
265.8 100.0 73.1 At2g28870 817436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
262.6 100.0 35.7 At1g05490 837051 chr31 (chromatin remodeling 31) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
258.1 100.0 423.7 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
253.9 100.0 102.3 At5g54660 835555 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBO O.I. C.G. H.G.
253.2 100.0 172.1 At3g58780 825047 SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. O.I. C.G. H.G.
253.0 100.0 78.2 At5g56510 835752 APUM12 (ARABIDOPSIS PUMILIO 12) F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
252.2 100.0 68.3 At5g66660 836798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
251.1 100.0 55.9 At4g16790 827385 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA O.I. C.G. H.G.
249.2 100.0 96.4 At1g14790 838044 RDR1 (RNA-DEPENDENT RNA POLYMERASE 1) Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. O.I. C.G. H.G.
248.4 100.0 290.1 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA O.I. C.G. H.G.
245.3 100.0 130.7 At5g60140 836136 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
244.6 100.0 113.7 At2g36270 818199 ABI5 (ABA INSENSITIVE 5) Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. O.I. C.G. H.G.
240.4 100.0 123.2 At5g14130 831263 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
233.6 100.0 69.5 At3g54390 824605 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBFOM O.I. C.G. H.G.
230.1 100.0 124.9 At4g22400 828335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
225.3 100.0 50.1 At5g11360 831007 - F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
225.0 100.0 140.8 At2g02230 814754 AtPP2-B1 (Phloem protein 2-B1) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
221.3 100.0 54.2 At5g47920 834843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
218.3 100.0 94.0 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
214.2 100.0 235.9 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
209.7 100.0 175.5 At2g16890 816190 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;P O.I. C.G. H.G.
203.5 100.0 78.8 At1g66360 842954 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
200.7 100.0 184.0 At1g62990 842602 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7) Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46. O.I. C.G. H.G.
193.7 100.0 67.4 At5g25580 832633 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
193.0 100.0 49.3 At3g24230 822010 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
192.2 100.0 112.7 At2g21560 816695 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
190.7 100.0 387.6 At2g07711 3768480 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
188.0 100.0 338.7 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
187.8 100.0 69.0 At5g40970 834099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
180.4 100.0 85.9 At2g41550 818753 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
178.4 100.0 131.7 At2g30080 817559 ZIP6 member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess. O.I. C.G. H.G.
177.9 100.0 121.0 At4g31360 829263 selenium binding F:selenium binding;P:cell redox homeostasis;C:unknown;MOPFB O.I. C.G. H.G.
175.8 100.0 145.3 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
170.0 100.0 135.6 At5g24580 832529 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
168.9 100.0 161.2 At4g25020 828605 KOW domain-containing protein / D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
166.2 100.0 129.6 At1g64060 842710 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. O.I. C.G. H.G.
164.0 99.9 622.8 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
163.0 99.9 189.3 At5g40980 834100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
161.8 99.9 67.2 At5g47150 834761 YDG/SRA domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
160.9 99.9 104.4 At3g50550 824219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
158.3 99.9 30.1 At5g25620 832638 YUC6 (YUCCA6) F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:auxin biosynthetic process;C:unknown;BOFMPA O.I. C.G. H.G.
158.1 99.9 244.8 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
157.1 99.9 147.6 At5g23890 832454 - F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV O.I. C.G. H.G.
154.9 99.9 33.0 At1g22980 838905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
153.3 99.9 190.6 At3g09980 820159 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
150.9 99.9 40.8 At3g11870 820360 protein kinase-related F:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVA O.I. C.G. H.G.
150.8 99.9 174.8 At3g24490 822039 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBV O.I. C.G. H.G.
150.4 99.9 109.7 At1g71050 843445 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBM O.I. C.G. H.G.
148.4 99.9 72.2 At3g21830 821737 ASK8 (ARABIDOPSIS SKP1-LIKE 8) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
148.2 99.9 170.7 At1g61090 842401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
147.1 99.9 243.0 At3g10590 820227 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
145.7 99.9 54.0 At4g29650 829086 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO O.I. C.G. H.G.
145.0 99.9 113.3 At1g71170 843457 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein F:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
144.6 99.9 41.9 At4g23240 828423 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
144.5 99.9 20.9 At1g21950 838798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
143.7 99.9 91.1 At5g23570 832422 SGS3 (SUPPRESSOR OF GENE SILENCING 3) Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway. O.I. C.G. H.G.
141.0 99.9 233.8 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. O.I. C.G. H.G.
140.8 99.9 165.9 At3g57390 824906 AGL18 encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. O.I. C.G. H.G.
140.7 99.9 39.9 At4g09820 826571 TT8 (TRANSPARENT TESTA 8) TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1450.1	100.0	459.0	At4g22050	828294	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOP	O.I.	C.G.	H.G.
1297.5	100.0	282.5	At1g24000	839012	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1178.9	100.0	562.3	At3g57250	824892	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
996.8	100.0	105.6	At1g63960	842699	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
969.6	100.0	151.9	At1g51000	841522	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
954.7	100.0	555.5	At3g13630	820567	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
809.8	100.0	210.2	At3g14780	820706	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV	O.I.	C.G.	H.G.
758.2	100.0	149.8	At5g40140	834011	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex, chloroplast;PMFOB	O.I.	C.G.	H.G.
749.1	100.0	728.9	At1g12180	837771	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
697.6	100.0	218.6	At1g06420	837153	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB	O.I.	C.G.	H.G.
588.6	100.0	227.2	At1g78090	844144	ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE)	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	O.I.	C.G.	H.G.
541.2	100.0	147.2	At5g18090	831636	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
531.1	100.0	717.3	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	O.I.	C.G.	H.G.
487.2	100.0	237.8	At4g21630	828250	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
455.0	100.0	60.7	At4g02670	828206	AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF	O.I.	C.G.	H.G.
446.4	100.0	325.6	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
435.5	100.0	109.7	At5g35550	833520	TT2 (TRANSPARENT TESTA 2)	TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
412.2	100.0	151.6	At1g74055	843745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
401.9	100.0	366.4	At1g44810	841045	transcription regulator	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
399.7	100.0	217.5	At1g26930	839583	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA	O.I.	C.G.	H.G.
389.0	100.0	190.3	At4g36920	829845	AP2 (APETALA 2)	Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.	O.I.	C.G.	H.G.
384.4	100.0	230.3	At1g20680	838656	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POBM	O.I.	C.G.	H.G.
375.1	100.0	305.9	At3g04280	819583	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	O.I.	C.G.	H.G.
371.3	100.0	51.0	At3g21860	821740	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
363.1	100.0	175.4	At1g31290	840017	PAZ domain-containing protein / piwi domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	C.G.	H.G.
362.5	100.0	432.4	At3g29075	822552	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
352.3	100.0	32.8	At1g73850	843721	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV	O.I.	C.G.	H.G.
351.1	100.0	89.7	At1g77660	844102	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF	O.I.	C.G.	H.G.
337.0	100.0	121.1	At3g21840	821738	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV	O.I.	C.G.	H.G.
333.3	100.0	194.4	At5g25220	832593	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia	O.I.	C.G.	H.G.
327.5	100.0	259.5	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
323.4	100.0	64.2	At1g24010	839013	-	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
322.4	100.0	133.5	At4g37650	829919	SHR (SHORT ROOT)	Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.	O.I.	C.G.	H.G.
320.5	100.0	55.3	At3g25855	822180	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
312.2	100.0	165.9	At5g44080	834431	bZIP transcription factor family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV	O.I.	C.G.	H.G.
299.9	100.0	134.5	At3g14570	820683	ATGSL04 (glucan synthase-like 4)	encodes a protein similar to callose synthase	O.I.	C.G.	H.G.
291.5	100.0	138.3	At4g00270	827164	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM	O.I.	C.G.	H.G.
284.2	100.0	166.3	At1g61350	842429	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
278.7	100.0	71.6	At1g51300	841553	acyl-protein thioesterase-related	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBO	O.I.	C.G.	H.G.
278.3	100.0	46.3	At1g63950	842698	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
266.1	100.0	473.0	At3g23450	3768908	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	O.I.	C.G.	H.G.
265.8	100.0	73.1	At2g28870	817436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
262.6	100.0	35.7	At1g05490	837051	chr31 (chromatin remodeling 31)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
258.1	100.0	423.7	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
253.9	100.0	102.3	At5g54660	835555	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
253.2	100.0	172.1	At3g58780	825047	SHP1 (SHATTERPROOF 1)	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	O.I.	C.G.	H.G.
253.0	100.0	78.2	At5g56510	835752	APUM12 (ARABIDOPSIS PUMILIO 12)	F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
252.2	100.0	68.3	At5g66660	836798	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
251.1	100.0	55.9	At4g16790	827385	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
249.2	100.0	96.4	At1g14790	838044	RDR1 (RNA-DEPENDENT RNA POLYMERASE 1)	Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.	O.I.	C.G.	H.G.
248.4	100.0	290.1	At1g28420	839740	HB-1 (homeobox-1)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
245.3	100.0	130.7	At5g60140	836136	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
244.6	100.0	113.7	At2g36270	818199	ABI5 (ABA INSENSITIVE 5)	Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.	O.I.	C.G.	H.G.
240.4	100.0	123.2	At5g14130	831263	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
233.6	100.0	69.5	At3g54390	824605	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBFOM	O.I.	C.G.	H.G.
230.1	100.0	124.9	At4g22400	828335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
225.3	100.0	50.1	At5g11360	831007	-	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
225.0	100.0	140.8	At2g02230	814754	AtPP2-B1 (Phloem protein 2-B1)	F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
221.3	100.0	54.2	At5g47920	834843	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
218.3	100.0	94.0	At5g16950	831558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
214.2	100.0	235.9	At1g15940	838164	binding	F:binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
209.7	100.0	175.5	At2g16890	816190	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;P	O.I.	C.G.	H.G.
203.5	100.0	78.8	At1g66360	842954	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
200.7	100.0	184.0	At1g62990	842602	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.	O.I.	C.G.	H.G.
193.7	100.0	67.4	At5g25580	832633	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
193.0	100.0	49.3	At3g24230	822010	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
192.2	100.0	112.7	At2g21560	816695	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
190.7	100.0	387.6	At2g07711	3768480	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
188.0	100.0	338.7	At3g50690	824233	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
187.8	100.0	69.0	At5g40970	834099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
180.4	100.0	85.9	At2g41550	818753	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
178.4	100.0	131.7	At2g30080	817559	ZIP6	member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.	O.I.	C.G.	H.G.
177.9	100.0	121.0	At4g31360	829263	selenium binding	F:selenium binding;P:cell redox homeostasis;C:unknown;MOPFB	O.I.	C.G.	H.G.
175.8	100.0	145.3	At2g39260	818511	RNA binding / binding / protein binding	F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
170.0	100.0	135.6	At5g24580	832529	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
168.9	100.0	161.2	At4g25020	828605	KOW domain-containing protein / D111/G-patch domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
166.2	100.0	129.6	At1g64060	842710	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.	O.I.	C.G.	H.G.
164.0	99.9	622.8	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
163.0	99.9	189.3	At5g40980	834100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
161.8	99.9	67.2	At5g47150	834761	YDG/SRA domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
160.9	99.9	104.4	At3g50550	824219	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
158.3	99.9	30.1	At5g25620	832638	YUC6 (YUCCA6)	F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:auxin biosynthetic process;C:unknown;BOFMPA	O.I.	C.G.	H.G.
158.1	99.9	244.8	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
157.1	99.9	147.6	At5g23890	832454	-	F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV	O.I.	C.G.	H.G.
154.9	99.9	33.0	At1g22980	838905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
153.3	99.9	190.6	At3g09980	820159	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
150.9	99.9	40.8	At3g11870	820360	protein kinase-related	F:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVA	O.I.	C.G.	H.G.
150.8	99.9	174.8	At3g24490	822039	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBV	O.I.	C.G.	H.G.
150.4	99.9	109.7	At1g71050	843445	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBM	O.I.	C.G.	H.G.
148.4	99.9	72.2	At3g21830	821737	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
148.2	99.9	170.7	At1g61090	842401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
147.1	99.9	243.0	At3g10590	820227	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
145.7	99.9	54.0	At4g29650	829086	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
145.0	99.9	113.3	At1g71170	843457	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	F:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
144.6	99.9	41.9	At4g23240	828423	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
144.5	99.9	20.9	At1g21950	838798	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
143.7	99.9	91.1	At5g23570	832422	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.	O.I.	C.G.	H.G.
141.0	99.9	233.8	At1g65440	842855	GTB1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.	O.I.	C.G.	H.G.
140.8	99.9	165.9	At3g57390	824906	AGL18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	O.I.	C.G.	H.G.
140.7	99.9	39.9	At4g09820	826571	TT8 (TRANSPARENT TESTA 8)	TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.	O.I.	C.G.	H.G.

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GSM ID	GSM311281
Assay name	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1
GSE experiment	GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Microarray experiments to specifically-expressed genes

GSM ID GSM311281 Assay name Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

GSM ID GSM311281

Assay name Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1

GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage