Microarray experiments to specifically-expressed genes

GSM ID GSM311280
Assay name Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2
GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2140.0100.0284.5At5g2451083252260s acidic ribosomal protein P1, putativeF:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MFOPAO.I.C.G.H.G.
1684.5100.0353.9At1g16980838269ATTPS2Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
1627.6100.0660.7At3g57250824892emsy N terminus domain-containing protein / ENT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
1506.1100.0642.9At3g24280822016SMAP2 (small acidic protein 2)F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
1469.9100.0125.9At2g23210816853UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PO.I.C.G.H.G.
1457.9100.0121.9At1g48010841219invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1279.0100.066.4At1g75600843895histone H3.2, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.C.G.H.G.
1226.5100.0389.4At4g13080826922xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
1163.9100.0122.5At4g20200827766terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POFO.I.C.G.H.G.
1152.1100.0667.3At2g42100818810actin, putativeF:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABVO.I.C.G.H.G.
1135.8100.0184.7At5g0949083080840S ribosomal protein S15 (RPS15B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.C.G.H.G.
1124.3100.066.6At1g17000838270ATTPS3Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
1099.7100.0136.8At1g73560843690protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
1078.7100.0995.2At3g03410821262calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
1061.9100.0160.2At1g60985842390SCRL6 (SCR-Like 6)Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).O.I.C.G.H.G.
1041.5100.0101.1At3g51700824333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBMFVO.I.C.G.H.G.
1027.7100.0283.5At3g09140820068unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1022.6100.0256.1At1g09510837476cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
1013.1100.0400.3At2g26870817228phosphoesterase family proteinF:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOAO.I.C.G.H.G.
1012.3100.0358.9At4g39000830055AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
923.9100.0359.8At4g39955830156hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:plasma membrane;BOMPAFO.I.C.G.H.G.
923.0100.066.5At1g12190837772F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
920.7100.0326.6At4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).O.I.C.G.H.G.
917.7100.0241.2At4g37950829951lyaseF:lyase activity;P:biological_process unknown;C:unknown;PFBO.I.C.G.H.G.
917.6100.0121.6At5g26630832726MADS-box protein (AGL35)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
893.4100.0268.5At5g05260830408CYP79A2 (CYTOCHROME P450 79A2)Encodes cytochrome P450 CYP79A2.O.I.C.G.H.G.
890.8100.0255.5At4g17160827427ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAO.I.C.G.H.G.
887.5100.0147.7At2g20595816583unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
883.3100.0162.8At1g691908432502-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthaseencodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.O.I.C.G.H.G.
881.6100.0110.5At2g26320817172AGL33 (AGAMOUS-LIKE 33)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
880.7100.0867.1At1g65300842838AGL38 (AGAMOUS-LIKE 38)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
877.6100.0234.6At1g76290843962AMP-dependent synthetase and ligase family proteinF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
864.7100.0168.4At4g18870827621heat shock transcription factor family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
849.4100.0180.1At3g42830823327ring-box protein Roc1/Rbx1/Hrt1, putativeF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPVO.I.C.G.H.G.
828.6100.0173.7At5g63740836494zinc finger protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
826.0100.089.8At5g46540834697PGP7 (P-GLYCOPROTEIN 7)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
816.6100.066.7At1g59800842273cullin-relatedF:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MFPOO.I.C.G.H.G.
812.9100.0114.9At3g05310819695MIRO3Encodes a protein with similarity to MIRO GTPases.O.I.C.G.H.G.
812.7100.0390.2At1g80330844373GA3OX4 (GIBBERELLIN 3-OXIDASE 4)Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.O.I.C.G.H.G.
797.8100.0987.8At2g39640818547glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
795.6100.0183.8At3g25420822126scpl21 (serine carboxypeptidase-like 21)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
792.8100.0184.4At3g01880821296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBOO.I.C.G.H.G.
789.7100.062.6At2g31760817733zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVO.I.C.G.H.G.
777.9100.069.7At3g15490820788unknown proteinF:unknown;P:biological_process unknown;C:unknown;PFOMO.I.C.G.H.G.
763.5100.0256.3At3g48950824056glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
749.8100.0434.4At2g23990816933plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMAO.I.C.G.H.G.
736.6100.0322.2At1g20140838604ASK4 (ARABIDOPSIS SKP1-LIKE 4)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFVO.I.C.G.H.G.
732.5100.0413.2At2g15325816022protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
723.6100.0231.9At2g03190814848ASK16 (ARABIDOPSIS SKP1-LIKE 16)one of SKP1 homologs. Gene is expressed specifically in the silique.O.I.C.G.H.G.
721.8100.0640.2At5g38195833801protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
710.3100.0218.7At4g11510826756RALFL28 (ralf-like 28)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
689.4100.0362.7At4g27890828902nuclear movement family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.C.G.H.G.
668.3100.0202.8At1g24000839012Bet v I allergen family proteinF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
643.8100.0456.1At3g13630820567unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
643.2100.044.3At2g03770814904sulfotransferase family proteinF:sulfotransferase activity;P:unknown;C:unknown;MOPBFO.I.C.G.H.G.
623.8100.0168.4At5g60220836144TET4 (TETRASPANIN4)Member of TETRASPANIN familyO.I.C.G.H.G.
622.8100.048.1At3g10900820260(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAO.I.C.G.H.G.
622.7100.0143.8At2g18490816364zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
600.7100.093.0At3g05860819755MADS-box protein (AGL45)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
595.3100.0207.4At3g52780824444PAP20F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFAO.I.C.G.H.G.
594.3100.086.2At5g65370836662epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
590.3100.0379.5At3g60700825241unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
585.9100.0166.9At1g72580843590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
575.4100.0163.9At2g07120815281F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
574.5100.0190.8At1g29080839783peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
567.6100.0274.4At1g02980839415CUL2 (CULLIN 2)encodes an Arabidopsis cullinO.I.C.G.H.G.
525.4100.0110.8At2g32340817795-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMAOPO.I.C.G.H.G.
524.7100.0125.5At2g30730817624serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
501.1100.054.5At1g69100843242aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPBO.I.C.G.H.G.
500.5100.076.0At4g34330829583unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
488.6100.092.2At3g03400821266calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
486.4100.056.4At5g60440836165AGL62 (Agamous-like 62)AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.O.I.C.G.H.G.
482.4100.042.2At3g66656819848AGL91F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
476.6100.0437.6At5g10230830887ANNAT7 (ANNEXIN ARABIDOPSIS 7)Encodes a calcium-binding protein annexin (AnnAt7).O.I.C.G.H.G.
472.0100.059.4At1g20690838657-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
470.5100.0290.6At5g17470831613calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
470.5100.0257.5At2g27070817249ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13)member of Response Regulator: B- TypeO.I.C.G.H.G.
465.4100.0495.2At3g14850820714unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
451.6100.0278.1At3g02800821239phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphataseF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBMO.I.C.G.H.G.
444.1100.040.9At2g15740816068zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
440.1100.0125.2At2g27700817316eukaryotic translation initiation factor 2 family protein / eIF-2 family proteinF:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAPO.I.C.G.H.G.
439.0100.0151.9At1g10730837616clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.C.G.H.G.
431.1100.055.1At2g42090818809ACT9 (ACTIN 9)actin related gene or pseudogene, based on sequence divergence and lack of expressionO.I.C.G.H.G.
430.1100.084.0At5g41450834146zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
428.6100.0114.0At1g76720844006GTP binding / GTPase/ translation initiation factorF:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
427.5100.0242.8At1g20680838656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POBMO.I.C.G.H.G.
426.8100.0103.6At1g28030839696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:2-oxoglutarate-dependent dioxygenase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
418.1100.0416.2At5g44830834513glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMAO.I.C.G.H.G.
414.3100.039.2At4g05630825935unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
412.5100.060.2At2g26050817146zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;PMO.I.C.G.H.G.
408.4100.0164.8At4g25610828666zinc finger (C2H2 type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPVO.I.C.G.H.G.
407.4100.0101.1At4g15040827163identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAMO.I.C.G.H.G.
405.8100.040.6At1g51290841552F-box family protein (FBX10)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POO.I.C.G.H.G.
401.7100.0205.8At3g13370820537unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
399.2100.0149.3At5g39560833952-F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAFO.I.C.G.H.G.
394.8100.092.4At5g14400831291CYP724A1member of CYP724AO.I.C.G.H.G.
394.6100.077.7At3g11750820348dihydroneopterin aldolase, putativeF:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:unknown;BOPAFO.I.C.G.H.G.
391.4100.0138.7At1g51210841544UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMOBFVO.I.C.G.H.G.
381.1100.056.4At5g53840835465F-box family protein (FBL13)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO.I.C.G.H.G.
370.9100.0118.9At4g14780827133protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.



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