CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM311279

Assay name Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1

GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1357.5 100.0 275.3 At5g39560 833952 - F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAF O.I. C.G. H.G.
1318.7 100.0 119.3 At2g23210 816853 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P O.I. C.G. H.G.
1291.5 100.0 129.0 At4g20200 827766 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POF O.I. C.G. H.G.
1237.4 100.0 133.5 At3g05860 819755 MADS-box protein (AGL45) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
1188.8 100.0 677.9 At2g42100 818810 actin, putative F:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABV O.I. C.G. H.G.
1164.4 100.0 384.9 At4g39000 830055 AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
1147.7 100.0 537.5 At2g23990 816933 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMA O.I. C.G. H.G.
1129.8 100.0 373.7 At4g13080 826922 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
1104.6 100.0 164.7 At2g20595 816583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1089.6 100.0 451.8 At1g80330 844373 GA3OX4 (GIBBERELLIN 3-OXIDASE 4) Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29. O.I. C.G. H.G.
1083.0 100.0 539.0 At3g57250 824892 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
1017.0 100.0 106.7 At1g63960 842699 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
992.2 100.0 480.9 At2g15325 816022 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
968.8 100.0 279.6 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. O.I. C.G. H.G.
968.7 100.0 943.1 At3g03410 821262 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
961.0 100.0 190.6 At5g24510 832522 60s acidic ribosomal protein P1, putative F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MFOPA O.I. C.G. H.G.
958.2 100.0 254.0 At4g11510 826756 RALFL28 (ralf-like 28) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
921.3 100.0 166.3 At5g09490 830808 40S ribosomal protein S15 (RPS15B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF O.I. C.G. H.G.
917.3 100.0 261.2 At1g16980 838269 ATTPS2 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
892.8 100.0 111.2 At2g26320 817172 AGL33 (AGAMOUS-LIKE 33) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
883.7 100.0 233.1 At1g24000 839012 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
855.0 100.0 93.4 At1g48010 841219 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
845.3 100.0 231.5 At4g37950 829951 lyase F:lyase activity;P:biological_process unknown;C:unknown;PFB O.I. C.G. H.G.
840.6 100.0 521.2 At3g13630 820567 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
823.8 100.0 53.3 At1g75600 843895 histone H3.2, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO O.I. C.G. H.G.
809.4 100.0 117.4 At1g73560 843690 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
806.0 100.0 251.1 At3g09140 820068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
788.0 100.0 465.0 At3g24280 822016 SMAP2 (small acidic protein 2) F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
778.2 100.0 238.8 At4g17160 827427 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA O.I. C.G. H.G.
762.2 100.0 86.5 At3g51700 824333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBMFV O.I. C.G. H.G.
747.2 100.0 235.6 At2g03190 814848 ASK16 (ARABIDOPSIS SKP1-LIKE 16) one of SKP1 homologs. Gene is expressed specifically in the silique. O.I. C.G. H.G.
744.2 100.0 650.1 At5g38195 833801 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
741.5 100.0 323.2 At1g20140 838604 ASK4 (ARABIDOPSIS SKP1-LIKE 4) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV O.I. C.G. H.G.
740.9 100.0 293.0 At4g25000 828603 AMY1 (ALPHA-AMYLASE-LIKE) Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). O.I. C.G. H.G.
727.4 100.0 108.7 At3g05310 819695 MIRO3 Encodes a protein with similarity to MIRO GTPases. O.I. C.G. H.G.
719.8 100.0 938.3 At2g39640 818547 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
702.1 100.0 130.2 At1g60985 842390 SCRL6 (SCR-Like 6) Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). O.I. C.G. H.G.
689.0 100.0 143.7 At1g69190 843250 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress. O.I. C.G. H.G.
686.6 100.0 765.6 At1g65300 842838 AGL38 (AGAMOUS-LIKE 38) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
671.0 100.0 240.2 At3g48950 824056 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
667.1 100.0 204.6 At1g76290 843962 AMP-dependent synthetase and ligase family protein F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
660.2 100.0 140.8 At2g30730 817624 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
657.5 100.0 354.2 At4g27890 828902 nuclear movement family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
644.2 100.0 676.0 At1g12180 837771 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
637.3 100.0 164.5 At3g25420 822126 scpl21 (serine carboxypeptidase-like 21) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
627.8 100.0 50.5 At1g51290 841552 F-box family protein (FBX10) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO O.I. C.G. H.G.
623.9 100.0 78.1 At5g46540 834697 PGP7 (P-GLYCOPROTEIN 7) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
621.1 100.0 333.9 At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
617.4 100.0 47.9 At3g10900 820260 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA O.I. C.G. H.G.
614.6 100.0 99.6 At5g26630 832726 MADS-box protein (AGL35) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
592.1 100.0 288.1 At4g39955 830156 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:plasma membrane;BOMPAF O.I. C.G. H.G.
588.3 100.0 305.0 At2g26870 817228 phosphoesterase family protein F:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOA O.I. C.G. H.G.
582.4 100.0 166.4 At1g72580 843590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
581.6 100.0 483.4 At5g10230 830887 ANNAT7 (ANNEXIN ARABIDOPSIS 7) Encodes a calcium-binding protein annexin (AnnAt7). O.I. C.G. H.G.
579.3 100.0 137.8 At4g18870 827621 heat shock transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
578.0 100.0 52.6 At1g12190 837772 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
555.6 100.0 161.1 At2g07120 815281 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
547.1 100.0 198.8 At3g52780 824444 PAP20 F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA O.I. C.G. H.G.
539.5 100.0 61.7 At2g42090 818809 ACT9 (ACTIN 9) actin related gene or pseudogene, based on sequence divergence and lack of expression O.I. C.G. H.G.
533.2 100.0 99.2 At4g36590 829811 MADS-box protein (AGL40) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
527.2 100.0 269.7 At1g20680 838656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POBM O.I. C.G. H.G.
526.0 100.0 264.1 At1g02980 839415 CUL2 (CULLIN 2) encodes an Arabidopsis cullin O.I. C.G. H.G.
500.5 100.0 57.2 At5g60440 836165 AGL62 (Agamous-like 62) AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development. O.I. C.G. H.G.
500.0 100.0 138.1 At3g42830 823327 ring-box protein Roc1/Rbx1/Hrt1, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV O.I. C.G. H.G.
489.0 100.0 180.3 At4g25610 828666 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPV O.I. C.G. H.G.
487.6 100.0 177.5 At5g10220 830886 ANN6 (ANNEXIN ARABIDOPSIS 6) Encodes a calcium-binding protein annexin (AnnAt6). O.I. C.G. H.G.
482.2 100.0 343.0 At3g60700 825241 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
478.9 100.0 175.3 At1g09510 837476 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
471.5 100.0 257.7 At2g27070 817249 ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13) member of Response Regulator: B- Type O.I. C.G. H.G.
459.7 100.0 215.8 At1g54440 841886 3'-5' exonuclease/ nucleic acid binding F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFP O.I. C.G. H.G.
459.2 100.0 107.3 At4g15040 827163 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAM O.I. C.G. H.G.
458.3 100.0 144.3 At5g60220 836144 TET4 (TETRASPANIN4) Member of TETRASPANIN family O.I. C.G. H.G.
449.6 100.0 154.7 At1g72000 843531 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
438.3 100.0 126.3 At5g63740 836494 zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
436.0 100.0 101.9 At1g51000 841522 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
430.2 100.0 26.5 At1g30740 839954 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
420.2 100.0 80.1 At3g11750 820348 dihydroneopterin aldolase, putative F:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:unknown;BOPAF O.I. C.G. H.G.
419.0 100.0 51.2 At3g15490 820788 unknown protein F:unknown;P:biological_process unknown;C:unknown;PFOM O.I. C.G. H.G.
415.6 100.0 94.8 At5g14400 831291 CYP724A1 member of CYP724A O.I. C.G. H.G.
406.4 100.0 116.2 At2g18490 816364 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
405.0 100.0 206.7 At3g13370 820537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
399.3 100.0 104.5 At1g70430 843379 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA O.I. C.G. H.G.
395.4 100.0 130.2 At3g01880 821296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBO O.I. C.G. H.G.
394.7 100.0 404.4 At5g44830 834513 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA O.I. C.G. H.G.
384.4 100.0 106.4 At5g03920 830271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
380.4 100.0 270.8 At1g15310 838100 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins O.I. C.G. H.G.
372.6 100.0 55.7 At5g53840 835465 F-box family protein (FBL13) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P O.I. C.G. H.G.
360.1 100.0 43.9 At1g64030 842706 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF O.I. C.G. H.G.
359.7 100.0 435.4 At3g14850 820714 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
354.8 100.0 52.5 At1g29110 839786 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
350.1 100.0 90.4 At2g32340 817795 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMAOP O.I. C.G. H.G.
349.2 100.0 378.6 At1g07690 837282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
341.2 100.0 61.1 At5g61260 836247 chromosome scaffold protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
340.0 100.0 151.9 At4g22400 828335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
332.3 100.0 49.8 At1g20690 838657 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
331.5 100.0 31.8 At2g03770 814904 sulfotransferase family protein F:sulfotransferase activity;P:unknown;C:unknown;MOPBF O.I. C.G. H.G.
328.3 100.0 107.1 At4g24650 828567 ATIPT4 AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds O.I. C.G. H.G.
326.7 100.0 85.4 At2g37420 818318 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
321.7 100.0 38.9 At3g24220 822008 NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. O.I. C.G. H.G.
317.1 100.0 41.5 At1g59800 842273 cullin-related F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MFPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1357.5	100.0	275.3	At5g39560	833952	-	F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAF	O.I.	C.G.	H.G.
1318.7	100.0	119.3	At2g23210	816853	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1291.5	100.0	129.0	At4g20200	827766	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POF	O.I.	C.G.	H.G.
1237.4	100.0	133.5	At3g05860	819755	MADS-box protein (AGL45)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
1188.8	100.0	677.9	At2g42100	818810	actin, putative	F:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABV	O.I.	C.G.	H.G.
1164.4	100.0	384.9	At4g39000	830055	AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
1147.7	100.0	537.5	At2g23990	816933	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMA	O.I.	C.G.	H.G.
1129.8	100.0	373.7	At4g13080	826922	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
1104.6	100.0	164.7	At2g20595	816583	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1089.6	100.0	451.8	At1g80330	844373	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.	O.I.	C.G.	H.G.
1083.0	100.0	539.0	At3g57250	824892	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
1017.0	100.0	106.7	At1g63960	842699	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
992.2	100.0	480.9	At2g15325	816022	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
968.8	100.0	279.6	At5g05260	830408	CYP79A2 (CYTOCHROME P450 79A2)	Encodes cytochrome P450 CYP79A2.	O.I.	C.G.	H.G.
968.7	100.0	943.1	At3g03410	821262	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
961.0	100.0	190.6	At5g24510	832522	60s acidic ribosomal protein P1, putative	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MFOPA	O.I.	C.G.	H.G.
958.2	100.0	254.0	At4g11510	826756	RALFL28 (ralf-like 28)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
921.3	100.0	166.3	At5g09490	830808	40S ribosomal protein S15 (RPS15B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
917.3	100.0	261.2	At1g16980	838269	ATTPS2	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
892.8	100.0	111.2	At2g26320	817172	AGL33 (AGAMOUS-LIKE 33)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
883.7	100.0	233.1	At1g24000	839012	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
855.0	100.0	93.4	At1g48010	841219	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
845.3	100.0	231.5	At4g37950	829951	lyase	F:lyase activity;P:biological_process unknown;C:unknown;PFB	O.I.	C.G.	H.G.
840.6	100.0	521.2	At3g13630	820567	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
823.8	100.0	53.3	At1g75600	843895	histone H3.2, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	O.I.	C.G.	H.G.
809.4	100.0	117.4	At1g73560	843690	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
806.0	100.0	251.1	At3g09140	820068	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
788.0	100.0	465.0	At3g24280	822016	SMAP2 (small acidic protein 2)	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
778.2	100.0	238.8	At4g17160	827427	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
762.2	100.0	86.5	At3g51700	824333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBMFV	O.I.	C.G.	H.G.
747.2	100.0	235.6	At2g03190	814848	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	one of SKP1 homologs. Gene is expressed specifically in the silique.	O.I.	C.G.	H.G.
744.2	100.0	650.1	At5g38195	833801	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
741.5	100.0	323.2	At1g20140	838604	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV	O.I.	C.G.	H.G.
740.9	100.0	293.0	At4g25000	828603	AMY1 (ALPHA-AMYLASE-LIKE)	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	O.I.	C.G.	H.G.
727.4	100.0	108.7	At3g05310	819695	MIRO3	Encodes a protein with similarity to MIRO GTPases.	O.I.	C.G.	H.G.
719.8	100.0	938.3	At2g39640	818547	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
702.1	100.0	130.2	At1g60985	842390	SCRL6 (SCR-Like 6)	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	O.I.	C.G.	H.G.
689.0	100.0	143.7	At1g69190	843250	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.	O.I.	C.G.	H.G.
686.6	100.0	765.6	At1g65300	842838	AGL38 (AGAMOUS-LIKE 38)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
671.0	100.0	240.2	At3g48950	824056	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
667.1	100.0	204.6	At1g76290	843962	AMP-dependent synthetase and ligase family protein	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
660.2	100.0	140.8	At2g30730	817624	serine/threonine protein kinase, putative	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
657.5	100.0	354.2	At4g27890	828902	nuclear movement family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
644.2	100.0	676.0	At1g12180	837771	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
637.3	100.0	164.5	At3g25420	822126	scpl21 (serine carboxypeptidase-like 21)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
627.8	100.0	50.5	At1g51290	841552	F-box family protein (FBX10)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
623.9	100.0	78.1	At5g46540	834697	PGP7 (P-GLYCOPROTEIN 7)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
621.1	100.0	333.9	At5g17470	831613	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
617.4	100.0	47.9	At3g10900	820260	(1-4)-beta-mannan endohydrolase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA	O.I.	C.G.	H.G.
614.6	100.0	99.6	At5g26630	832726	MADS-box protein (AGL35)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
592.1	100.0	288.1	At4g39955	830156	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:plasma membrane;BOMPAF	O.I.	C.G.	H.G.
588.3	100.0	305.0	At2g26870	817228	phosphoesterase family protein	F:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOA	O.I.	C.G.	H.G.
582.4	100.0	166.4	At1g72580	843590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
581.6	100.0	483.4	At5g10230	830887	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	Encodes a calcium-binding protein annexin (AnnAt7).	O.I.	C.G.	H.G.
579.3	100.0	137.8	At4g18870	827621	heat shock transcription factor family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
578.0	100.0	52.6	At1g12190	837772	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
555.6	100.0	161.1	At2g07120	815281	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
547.1	100.0	198.8	At3g52780	824444	PAP20	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA	O.I.	C.G.	H.G.
539.5	100.0	61.7	At2g42090	818809	ACT9 (ACTIN 9)	actin related gene or pseudogene, based on sequence divergence and lack of expression	O.I.	C.G.	H.G.
533.2	100.0	99.2	At4g36590	829811	MADS-box protein (AGL40)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
527.2	100.0	269.7	At1g20680	838656	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POBM	O.I.	C.G.	H.G.
526.0	100.0	264.1	At1g02980	839415	CUL2 (CULLIN 2)	encodes an Arabidopsis cullin	O.I.	C.G.	H.G.
500.5	100.0	57.2	At5g60440	836165	AGL62 (Agamous-like 62)	AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.	O.I.	C.G.	H.G.
500.0	100.0	138.1	At3g42830	823327	ring-box protein Roc1/Rbx1/Hrt1, putative	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV	O.I.	C.G.	H.G.
489.0	100.0	180.3	At4g25610	828666	zinc finger (C2H2 type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPV	O.I.	C.G.	H.G.
487.6	100.0	177.5	At5g10220	830886	ANN6 (ANNEXIN ARABIDOPSIS 6)	Encodes a calcium-binding protein annexin (AnnAt6).	O.I.	C.G.	H.G.
482.2	100.0	343.0	At3g60700	825241	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
478.9	100.0	175.3	At1g09510	837476	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
471.5	100.0	257.7	At2g27070	817249	ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13)	member of Response Regulator: B- Type	O.I.	C.G.	H.G.
459.7	100.0	215.8	At1g54440	841886	3'-5' exonuclease/ nucleic acid binding	F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFP	O.I.	C.G.	H.G.
459.2	100.0	107.3	At4g15040	827163	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAM	O.I.	C.G.	H.G.
458.3	100.0	144.3	At5g60220	836144	TET4 (TETRASPANIN4)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
449.6	100.0	154.7	At1g72000	843531	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
438.3	100.0	126.3	At5g63740	836494	zinc finger protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
436.0	100.0	101.9	At1g51000	841522	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
430.2	100.0	26.5	At1g30740	839954	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
420.2	100.0	80.1	At3g11750	820348	dihydroneopterin aldolase, putative	F:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:unknown;BOPAF	O.I.	C.G.	H.G.
419.0	100.0	51.2	At3g15490	820788	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PFOM	O.I.	C.G.	H.G.
415.6	100.0	94.8	At5g14400	831291	CYP724A1	member of CYP724A	O.I.	C.G.	H.G.
406.4	100.0	116.2	At2g18490	816364	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
405.0	100.0	206.7	At3g13370	820537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
399.3	100.0	104.5	At1g70430	843379	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA	O.I.	C.G.	H.G.
395.4	100.0	130.2	At3g01880	821296	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBO	O.I.	C.G.	H.G.
394.7	100.0	404.4	At5g44830	834513	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA	O.I.	C.G.	H.G.
384.4	100.0	106.4	At5g03920	830271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
380.4	100.0	270.8	At1g15310	838100	ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins	O.I.	C.G.	H.G.
372.6	100.0	55.7	At5g53840	835465	F-box family protein (FBL13)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
360.1	100.0	43.9	At1g64030	842706	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF	O.I.	C.G.	H.G.
359.7	100.0	435.4	At3g14850	820714	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
354.8	100.0	52.5	At1g29110	839786	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
350.1	100.0	90.4	At2g32340	817795	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMAOP	O.I.	C.G.	H.G.
349.2	100.0	378.6	At1g07690	837282	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
341.2	100.0	61.1	At5g61260	836247	chromosome scaffold protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
340.0	100.0	151.9	At4g22400	828335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
332.3	100.0	49.8	At1g20690	838657	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
331.5	100.0	31.8	At2g03770	814904	sulfotransferase family protein	F:sulfotransferase activity;P:unknown;C:unknown;MOPBF	O.I.	C.G.	H.G.
328.3	100.0	107.1	At4g24650	828567	ATIPT4	AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds	O.I.	C.G.	H.G.
326.7	100.0	85.4	At2g37420	818318	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
321.7	100.0	38.9	At3g24220	822008	NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6)	A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.	O.I.	C.G.	H.G.
317.1	100.0	41.5	At1g59800	842273	cullin-related	F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MFPO	O.I.	C.G.	H.G.

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GSM ID	GSM311279
Assay name	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1
GSE experiment	GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Microarray experiments to specifically-expressed genes

GSM ID GSM311279 Assay name Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

GSM ID GSM311279

Assay name Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1

GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage