Microarray experiments to specifically-expressed genes

GSM ID GSM311277
Assay name Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1
GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1627.9100.0279.4At3g02670821280proline-rich family proteinF:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVAO.I.C.G.H.G.
1270.6100.0113.8At5g58820835999subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
1205.3100.0251.7At1g73610843695GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
1103.6100.0809.0At4g35725829725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
942.6100.0276.3At2g23970816930defense-related protein, putativeF:unknown;P:defense response;C:endomembrane system;OBAFPMVO.I.C.G.H.G.
934.6100.0130.9At5g58840836001subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
788.3100.0251.6At5g0950083080940S ribosomal protein S15 (RPS15C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.C.G.H.G.
741.1100.0262.0At1g35183840406unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
684.3100.084.7At5g12060831079self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
588.1100.085.5At3g17080820965self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
582.6100.0323.3At3g05460819711sporozoite surface protein-relatedF:unknown;P:unknown;C:endomembrane system;MOBPO.I.C.G.H.G.
539.4100.0484.7At5g09370830796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
519.6100.0666.0At1g65300842838AGL38 (AGAMOUS-LIKE 38)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
439.2100.0108.4At2g43660818968glycosyl hydrolase family protein 17F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
434.1100.0118.3At5g59110836029subtilisin-like serine protease-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
427.3100.080.0At3g60010825171ASK13 (ARABIDOPSIS SKP1-LIKE 13)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFVO.I.C.G.H.G.
406.2100.060.4At3g24790822077ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
400.5100.0143.0At2g21730816710CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVO.I.C.G.H.G.
395.0100.088.8At5g26650832724AGL36 (AGAMOUS-LIKE 36)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
388.6100.057.1At5g53520835434ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8)oligopeptide transporterO.I.C.G.H.G.
370.3100.043.8At1g01530837142AGL28 (AGAMOUS-LIKE 28)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
368.0100.060.0At5g46540834697PGP7 (P-GLYCOPROTEIN 7)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
346.6100.0101.9At1g691908432502-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthaseencodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.O.I.C.G.H.G.
344.7100.027.7At1g31250840013proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVAO.I.C.G.H.G.
327.3100.0487.6At4g29285829050LCR24 (Low-molecular-weight cysteine-rich 24)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.C.G.H.G.
308.4100.044.9At5g60440836165AGL62 (Agamous-like 62)AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.O.I.C.G.H.G.
307.8100.0114.3At3g25420822126scpl21 (serine carboxypeptidase-like 21)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
304.5100.0614.8At3g24510822044-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
281.5100.064.8At5g52330835309meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFMOO.I.C.G.H.G.
276.6100.039.5At1g64940842802CYP89A6member of CYP89AO.I.C.G.H.G.
271.1100.0815.7At2g30810817632gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
267.1100.042.7At4g23520828452cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
260.8100.060.1At1g11070837648-F:unknown;P:unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
260.2100.045.6At4g02780828182GA1 (GA REQUIRING 1)Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesisO.I.C.G.H.G.
256.5100.0161.2At1g544408418863'-5' exonuclease/ nucleic acid bindingF:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFPO.I.C.G.H.G.
246.6100.040.7At3g43990823516bromo-adjacent homology (BAH) domain-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
243.3100.0189.2At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
235.5100.021.3At3g03260821305HDG8 (HOMEODOMAIN GLABROUS 8)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
227.8100.031.4At5g38330833815LCR80 (Low-molecular-weight cysteine-rich 80)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
211.0100.0226.9At5g27600832820LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.O.I.C.G.H.G.
206.0100.028.9At5g56480835749protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
195.9100.0210.6At3g22660821837rRNA processing protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPO.I.C.G.H.G.
194.9100.0638.2At5g02490831856heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVAO.I.C.G.H.G.
189.8100.044.6At1g48910841313YUC10F:oxidoreductase activity, monooxygenase activity, FAD binding;P:anatomical structure morphogenesis;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
175.5100.053.2At5g26630832726MADS-box protein (AGL35)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
170.3100.028.9At1g44090841012ATGA20OX5 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5)Encodes a gibberellin 20-oxidase.O.I.C.G.H.G.
170.1100.025.5At5g12910831131histone H3, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.C.G.H.G.
167.9100.052.6At4g03090828094sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPFVBO.I.C.G.H.G.
166.9100.060.0At3g55060824672unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
164.6100.033.0At4g11400826744ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing proteinF:DNA binding;P:unknown;C:vacuole;PMFO.I.C.G.H.G.
164.4100.0209.6At4g32105829342galactosyltransferaseF:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;PO.I.C.G.H.G.
160.499.9273.4At3g17170820974RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVAO.I.C.G.H.G.
158.399.947.7At5g22980832362scpl47 (serine carboxypeptidase-like 47)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
154.999.9170.4At1g80330844373GA3OX4 (GIBBERELLIN 3-OXIDASE 4)Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.O.I.C.G.H.G.
150.199.930.6At5g20430832165mob1/phocein family proteinF:protein binding;P:biological_process unknown;C:nucleus, phragmoplast;MFOPO.I.C.G.H.G.
148.199.9341.5At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
147.099.974.1At3g03240821317esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;PBOFO.I.C.G.H.G.
144.399.9102.9At5g5924083604240S ribosomal protein S8 (RPS8B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFPO.I.C.G.H.G.
143.299.916.5At2g46375819245unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
142.699.922.1At5g62110836331DNA bindingF:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVPO.I.C.G.H.G.
141.899.956.8At3g19350821469MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.O.I.C.G.H.G.
141.399.9140.0At5g23890832454-F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAVO.I.C.G.H.G.
139.499.9196.4At4g10920826690KELPTranscriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development.O.I.C.G.H.G.
138.899.9174.2At3g59820825151calcium-binding mitochondrial protein-relatedF:calcium ion binding;P:unknown;C:mitochondrion;MOFBPAVO.I.C.G.H.G.
137.999.931.3At5g13620831206unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
137.299.936.1At1g13680837929phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.C.G.H.G.
131.699.976.7At5g23680832433sterile alpha motif (SAM) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVO.I.C.G.H.G.
128.499.956.8At1g28030839696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:2-oxoglutarate-dependent dioxygenase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
127.599.932.0At5g588103771532-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
126.599.9214.3At2g02515814781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
124.399.9188.7At1g67830843109ATFXG1 (alpha-fucosidase 1)Encodes a protein with α-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFXG1 was able to remove the t-fucosyl residues of XXFG xyloglucan oligosaccharides.O.I.C.G.H.G.
120.599.9168.9At5g34940833437AtGUS3 (Arabidopsis thaliana glucuronidase 3)The protein is predicted (WoLF PSORT program) to be membrane-associated.O.I.C.G.H.G.
119.399.9170.7At5g65880836717unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
118.799.925.3At3g04540819610-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
118.299.9208.4At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPO.I.C.G.H.G.
118.299.932.8At5g60110836133APUM18 (Arabidopsis Pumilio 18)F:RNA binding, binding;P:unknown;C:chloroplast;OPFMO.I.C.G.H.G.
117.599.938.9At3g23060821880zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVO.I.C.G.H.G.
117.299.935.2At1g13790837939XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
116.999.945.0At4g27550828864ATTPS4Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
116.399.986.4At1g09510837476cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
114.699.9182.0At1g08580837380unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
112.799.920.0At1g23320838941TAR1 (TRYPTOPHAN AMINOTRANSFERASE RELATED 1)Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. This gene appears to be expressed at a very low level during seedling development. Triple mutant analyses implicate this gene in embryonic development.O.I.C.G.H.G.
111.099.9200.7At5g60030836125unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
109.299.9145.1At1g15310838100ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteinsO.I.C.G.H.G.
107.999.9117.9At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.C.G.H.G.
107.999.966.1At5g16950831558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
107.099.9101.3At3g19650821502cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
106.299.9107.9At1g73177843651BNS (BONSAI)The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.O.I.C.G.H.G.
106.199.978.0At3g49240824085emb1796 (embryo defective 1796)F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBAO.I.C.G.H.G.
101.499.929.6At5g62120836332ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23)member of Response Regulator: B- TypeO.I.C.G.H.G.
98.599.9162.2At5g20710832194BGAL7 (beta-galactosidase 7)F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PMBFOAO.I.C.G.H.G.
97.699.945.2At1g04880839388high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOPFBVO.I.C.G.H.G.
96.899.937.0At4g32080829339unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
96.099.929.1At2g18880816404VEL2 ((VERNALIZATION5/VIN3-LIKE))F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
95.899.9343.0At4g17520827467nuclear RNA-binding protein, putativeF:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVAO.I.C.G.H.G.
95.899.9191.3At2g21060816641ATGRP2B (GLYCINE-RICH PROTEIN 2B)glycine-rich protein (AtGRP2b)O.I.C.G.H.G.
94.199.974.5At1g05160839311CYP88A3 (CYTOCHROME P450 88 A3)Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.O.I.C.G.H.G.
92.899.968.1At3g14900820719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVAO.I.C.G.H.G.
92.799.9202.2At3g5866082503560S ribosomal protein-relatedF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAVO.I.C.G.H.G.
91.699.977.6At1g76820844016GTP binding / GTPaseF:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.



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