Microarray experiments to specifically-expressed genes

GSM ID GSM311276
Assay name Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2
GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2343.1100.0273.4At1g17800838358plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
2246.1100.0503.5At1g21850838787sks8 (SKU5 Similar 8)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
1826.0100.0320.5At1g78710844207unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
1816.7100.0216.6At4g23080828407unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
1709.5100.0207.1At4g10210826612unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
1676.7100.095.4At4g30380829161EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBOO.I.C.G.H.G.
1574.8100.0683.3At4g30070829130LCR59 (Low-molecular-weight cysteine-rich 59)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
1549.3100.0116.0At2g32360817797ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
1518.3100.0219.0At2g30090817560GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MPBAOO.I.C.G.H.G.
1489.1100.0186.7At5g61470836268zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPBFVAO.I.C.G.H.G.
1485.7100.0388.3At2g37720818349unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
1395.8100.0610.8At4g32105829342galactosyltransferaseF:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;PO.I.C.G.H.G.
1332.4100.0695.6At2g02515814781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
1317.6100.0969.7At2g44540819062AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
1304.3100.0497.6At4g23350828434unknown proteinF:unknown;P:unknown;C:endomembrane system;PFBO.I.C.G.H.G.
1302.6100.0388.1At2g06090815164self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
1288.6100.01365.9At3g17150820972enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
1200.4100.0976.2At5g54220835510-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
1044.0100.01139.8At5g39280833924ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
1034.9100.0738.5At3g14850820714unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
951.9100.095.0At1g13680837929phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.C.G.H.G.
904.8100.01059.9At3g24510822044-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
879.0100.0640.2At5g46810834725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
865.9100.0179.5At4g33830829525catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPFO.I.C.G.H.G.
857.8100.0821.9At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
830.9100.058.0At5g56480835749protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
820.6100.0142.1At1g22210838826trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFAO.I.C.G.H.G.
812.7100.0537.4At5g39260833922ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
811.8100.0215.4At1g56620842117pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
811.8100.0145.9At5g19270832047unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
777.8100.0129.2At1g64830842791aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
774.6100.0104.6At4g32080829339unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
751.0100.0160.2At3g57270824894BG1 (BETA-1,3-GLUCANASE 1)encodes a member of glycosyl hydrolase family 17O.I.C.G.H.G.
732.3100.083.9At3g16970820953self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
709.4100.0151.2At5g59110836029subtilisin-like serine protease-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
657.8100.0111.4At3g17230820983invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
655.2100.0104.9At5g06500830538AGL96 (AGAMOUS-LIKE 96)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
645.0100.0108.8At5g58840836001subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
608.0100.0237.3At1g35183840406unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
597.6100.034.4At2g19510816470LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
596.0100.01209.3At2g30810817632gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
577.3100.0321.8At3g05460819711sporozoite surface protein-relatedF:unknown;P:unknown;C:endomembrane system;MOBPO.I.C.G.H.G.
542.3100.0415.7At1g10190837557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
539.7100.061.3At1g10010837536AAP8Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity.O.I.C.G.H.G.
526.1100.0488.4At5g46950834741invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
504.2100.0333.1At3g46860823839serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
502.3100.0896.7At1g77510844087ATPDIL1-2 (PDI-LIKE 1-2)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.O.I.C.G.H.G.
495.0100.0204.2At1g09550837481pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
460.7100.0114.7At1g22015838806DD46F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOFO.I.C.G.H.G.
460.0100.082.0At4g31900829320chromatin remodeling factor, putativeF:in 6 functions;P:chromatin assembly or disassembly;C:chromatin, nucleus;MBOFPVAO.I.C.G.H.G.
458.5100.053.4At2g32770817838purple acid phosphatase (PAP13)F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PMOFBAO.I.C.G.H.G.
444.3100.0277.9At1g04645839459self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
404.1100.071.2At3g46840823837subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
389.9100.0182.8At4g20800827828FAD-binding domain-containing proteinF:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
363.5100.0397.8At5g09370830796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
359.1100.0174.5At3g17140820971invertase inhibitor-relatedF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
353.6100.0506.7At4g29285829050LCR24 (Low-molecular-weight cysteine-rich 24)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.C.G.H.G.
352.0100.069.7At5g35900833576LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
350.9100.044.5At1g64940842802CYP89A6member of CYP89AO.I.C.G.H.G.
348.7100.0197.7At5g14860831338transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
348.6100.0171.8At4g39650830119GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.O.I.C.G.H.G.
346.4100.0194.6At5g24316832501proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFOO.I.C.G.H.G.
328.8100.030.4At1g06020837111pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMFO.I.C.G.H.G.
319.4100.037.2At5g38330833815LCR80 (Low-molecular-weight cysteine-rich 80)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
309.8100.069.4At5g39440833940SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
309.2100.036.9At1g29600839837zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
305.2100.0143.1At1g44130841016nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMFO.I.C.G.H.G.
302.8100.055.0At2g19150816432pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
295.7100.060.9At1g50950841517thioredoxin-relatedF:unknown;P:cell redox homeostasis;C:unknown;MFOPBVO.I.C.G.H.G.
289.3100.0179.4At5g25410832613unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
282.3100.0151.2At2g23970816930defense-related protein, putativeF:unknown;P:defense response;C:endomembrane system;OBAFPMVO.I.C.G.H.G.
273.7100.0179.3At1g09370837459enzyme inhibitor/ pectinesteraseF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
268.8100.075.0At5g59190836037subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:response to cadmium ion, proteolysis;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
266.2100.091.3At1g15960838166NRAMP6member of Nramp2 familyO.I.C.G.H.G.
249.9100.0107.9At4g28700828988AMT1F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPAO.I.C.G.H.G.
247.6100.0253.0At5g15000831352-Encodes a ECA1 gametogenesis related family proteinO.I.C.G.H.G.
235.5100.036.1At1g19160838499-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
227.2100.036.5At2g40210818613AGL48 (AGAMOUS-LIKE 48)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
208.2100.045.6At2g12940815775UNE4 (unfertilized embryo sac 4)F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:nucleus, chloroplast;MPFOO.I.C.G.H.G.
196.3100.0165.8At5g15050831357glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinF:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVOO.I.C.G.H.G.
187.1100.036.1At5g58830836000identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
185.2100.0174.3At4g20050827750QRT3 (QUARTET 3)Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.O.I.C.G.H.G.
177.3100.022.5At2g35890818162CPK25member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
171.4100.038.8At2g26050817146zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;PMO.I.C.G.H.G.
164.399.9130.8At3g57160824883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
158.199.940.8At5g18950832013pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMFBAO.I.C.G.H.G.
155.799.964.2At3g10780820247emp24/gp25L/p24 family proteinF:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPOO.I.C.G.H.G.
153.899.925.2At1g10680837611PGP10 (P-GLYCOPROTEIN 10)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:mitochondrion;BOMAFPVO.I.C.G.H.G.
152.399.923.2At1g23320838941TAR1 (TRYPTOPHAN AMINOTRANSFERASE RELATED 1)Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. This gene appears to be expressed at a very low level during seedling development. Triple mutant analyses implicate this gene in embryonic development.O.I.C.G.H.G.
148.699.951.8At4g29370829058kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
144.399.960.4At1g26620839202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBO.I.C.G.H.G.
142.399.9208.4At4g16660827367heat shock protein 70, putative / HSP70, putativeF:ATP binding;P:unknown;C:plasma membrane, chloroplast;OBMFPAVO.I.C.G.H.G.
139.699.9143.3At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
135.799.945.3At2g20110816530tesmin/TSO1-like CXC domain-containing proteinF:transcription factor activity;P:unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
135.099.9178.8At5g34940833437AtGUS3 (Arabidopsis thaliana glucuronidase 3)The protein is predicted (WoLF PSORT program) to be membrane-associated.O.I.C.G.H.G.
132.699.929.6At4g11400826744ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing proteinF:DNA binding;P:unknown;C:vacuole;PMFO.I.C.G.H.G.
131.999.9100.1At5g64900836613PROPEP1Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.O.I.C.G.H.G.
130.399.964.7At2g19500816469CKX2 (CYTOKININ OXIDASE 2)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
129.799.923.9At1g36000840503LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
124.999.954.0At2g32340817795-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMAOPO.I.C.G.H.G.



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