CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM311274

Assay name Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2

GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1061.0 100.0 46.1 At4g00920 826366 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
606.5 100.0 56.9 At1g31400 840030 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
591.8 100.0 64.1 At1g53930 841831 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
542.1 100.0 64.0 At4g09940 826584 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
540.9 100.0 210.9 At4g31360 829263 selenium binding F:selenium binding;P:cell redox homeostasis;C:unknown;MOPFB O.I. C.G. H.G.
533.4 100.0 123.1 At2g46410 819249 CPC (CAPRICE) Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. O.I. C.G. H.G.
533.0 100.0 89.6 At4g00390 828200 transcription regulator F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA O.I. C.G. H.G.
527.8 100.0 714.6 At5g61030 836224 GR-RBP3 (glycine-rich RNA-binding protein 3) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. O.I. C.G. H.G.
504.7 100.0 201.9 At4g01180 828058 XH/XS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAV O.I. C.G. H.G.
485.2 100.0 318.6 At3g57930 824962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV O.I. C.G. H.G.
460.4 100.0 515.8 At1g72440 843576 EDA25 (embryo sac development arrest 25) F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA O.I. C.G. H.G.
392.6 100.0 79.2 At3g03130 821080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
378.6 100.0 220.8 At2g27470 817292 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA O.I. C.G. H.G.
371.4 100.0 171.9 At5g61190 836240 zinc finger protein-related F:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAV O.I. C.G. H.G.
324.6 100.0 183.2 At1g74250 843765 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVA O.I. C.G. H.G.
322.0 100.0 152.9 At1g17140 838284 tropomyosin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
319.0 100.0 58.1 At1g13790 837939 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
286.3 100.0 128.1 At3g49240 824085 emb1796 (embryo defective 1796) F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBA O.I. C.G. H.G.
280.3 100.0 318.9 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
279.6 100.0 69.4 At5g59340 836053 WOX2 (WUSCHEL RELATED HOMEOBOX 2) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain. O.I. C.G. H.G.
273.9 100.0 198.6 At4g25730 828678 FtsJ-like methyltransferase family protein F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA O.I. C.G. H.G.
273.2 100.0 36.6 At2g36550 818228 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVO O.I. C.G. H.G.
269.8 100.0 138.5 At3g51270 824290 ATP binding / catalytic/ protein serine/threonine kinase F:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
269.5 100.0 344.9 At3g58660 825035 60S ribosomal protein-related F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAV O.I. C.G. H.G.
268.5 100.0 246.5 At3g22660 821837 rRNA processing protein-related F:unknown;P:unknown;C:cellular_component unknown;MOFBP O.I. C.G. H.G.
259.6 100.0 110.9 At1g71870 843518 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
246.3 100.0 763.2 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
238.0 100.0 78.3 At2g18520 816367 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:membrane;POMFBA O.I. C.G. H.G.
237.5 100.0 128.8 At3g18610 821392 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1) F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
222.9 100.0 240.6 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
218.5 100.0 180.0 At1g68790 843210 LINC3 (LITTLE NUCLEI3) F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAV O.I. C.G. H.G.
216.4 100.0 216.2 At3g07050 819890 GTP-binding family protein F:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAV O.I. C.G. H.G.
214.4 100.0 50.7 At4g29940 829117 PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A) Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding. O.I. C.G. H.G.
194.7 100.0 115.9 At5g05210 830403 nucleolar matrix protein-related F:unknown;P:unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
194.6 100.0 202.9 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA O.I. C.G. H.G.
183.7 100.0 84.7 At3g44050 823523 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
178.5 100.0 89.3 At5g23680 832433 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV O.I. C.G. H.G.
176.8 100.0 363.6 At4g28365 828952 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFM O.I. C.G. H.G.
176.3 100.0 126.1 At2g21440 816683 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
176.2 100.0 288.4 At5g60960 836217 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM O.I. C.G. H.G.
176.1 100.0 133.2 At3g45450 823685 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV O.I. C.G. H.G.
174.3 100.0 253.1 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP O.I. C.G. H.G.
173.3 100.0 92.0 At5g19300 832050 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAV O.I. C.G. H.G.
172.8 100.0 51.8 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
170.0 100.0 143.4 At1g15910 838161 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
169.1 100.0 192.2 At3g59820 825151 calcium-binding mitochondrial protein-related F:calcium ion binding;P:unknown;C:mitochondrion;MOFBPAV O.I. C.G. H.G.
168.8 100.0 56.3 At4g37110 829865 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFO O.I. C.G. H.G.
168.1 100.0 91.6 At3g14900 820719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA O.I. C.G. H.G.
167.8 100.0 288.1 At3g07030 3768790 nucleic acid binding F:nucleic acid binding;P:unknown;C:unknown O.I. C.G. H.G.
162.6 99.9 105.0 At3g51280 824291 male sterility MS5, putative F:binding;P:unknown;C:cellular_component unknown;OBPAF O.I. C.G. H.G.
150.5 99.9 55.6 At4g28230 828938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
144.0 99.9 66.5 At1g18950 838476 aminoacyl-tRNA synthetase family F:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
142.1 99.9 36.0 At2g23530 816885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
141.3 99.9 17.3 At1g13230 837883 leucine-rich repeat family protein Encodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis. O.I. C.G. H.G.
139.8 99.9 232.8 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. O.I. C.G. H.G.
137.0 99.9 401.6 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. C.G. H.G.
136.5 99.9 172.9 At2g07696 815372 ribosomal protein S7 family protein F:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAF O.I. C.G. H.G.
134.0 99.9 168.7 At1g11240 837665 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
133.7 99.9 173.9 At3g24250 822012 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
132.4 99.9 112.6 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
130.9 99.9 46.8 At5g55520 835646 - F:unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
129.0 99.9 80.2 At3g02400 821210 forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOFBPVA O.I. C.G. H.G.
127.9 99.9 112.0 At1g52290 841659 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
126.8 99.9 73.6 At2g27170 817259 TTN7 (TITAN7) cohesin O.I. C.G. H.G.
125.4 99.9 190.4 At1g08580 837380 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
124.6 99.9 94.3 At1g19880 838576 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
120.5 99.9 69.8 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
119.9 99.9 54.1 At5g44700 834499 GSO2 (GASSHO 2) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. O.I. C.G. H.G.
117.4 99.9 20.3 At5g43530 834373 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 8 functions;P:unknown;C:chloroplast envelope;MBOFPVA O.I. C.G. H.G.
116.3 99.9 52.4 At1g55040 841947 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVA O.I. C.G. H.G.
113.6 99.9 373.5 At4g17520 827467 nuclear RNA-binding protein, putative F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA O.I. C.G. H.G.
112.1 99.9 49.1 At5g03670 831763 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB O.I. C.G. H.G.
111.5 99.9 33.4 At4g31615 829289 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PB O.I. C.G. H.G.
110.8 99.9 260.0 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
109.8 99.9 78.3 At1g64600 842768 copper ion binding / methyltransferase F:methyltransferase activity, copper ion binding;P:translation;C:cellular_component unknown;MFOBP O.I. C.G. H.G.
109.0 99.9 308.6 At5g48870 834945 SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes. O.I. C.G. H.G.
107.1 99.9 28.3 At4g31760 829304 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
106.5 99.9 136.3 At3g24080 821994 KRR1 family protein F:molecular_function unknown;P:response to salt stress;C:cytosol;MOFBPVA O.I. C.G. H.G.
105.9 99.9 41.0 At1g03830 839398 guanylate-binding family protein F:GTP binding, GTPase activity;P:immune response;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
105.6 99.9 244.9 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
104.4 99.9 197.3 At2g25670 817108 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
103.9 99.9 504.9 At2g30810 817632 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
103.4 99.9 58.2 At5g27550 832815 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex O.I. C.G. H.G.
102.3 99.9 135.7 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
101.8 99.9 37.1 At4g10640 826656 IQD16 (IQ-domain 16) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
101.0 99.9 195.6 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
101.0 99.9 28.5 At1g49110 841334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
100.3 99.9 78.9 At5g53800 835461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
100.0 99.9 72.9 At1g53720 841810 CYP59 (CYCLOPHILIN 59) Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis� trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles. O.I. C.G. H.G.
97.5 99.9 158.8 At5g64670 836588 ribosomal protein L15 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, large ribosomal subunit;BOMFP O.I. C.G. H.G.
95.9 99.9 43.3 At5g03870 831685 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
95.5 99.9 121.1 At5g27330 832791 - F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAV O.I. C.G. H.G.
94.8 99.9 47.2 At5g25580 832633 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
94.6 99.9 121.8 At2g39220 818507 PLP6 (PATATIN-LIKE PROTEIN 6) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF O.I. C.G. H.G.
94.6 99.9 27.0 At4g26660 828773 - F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAV O.I. C.G. H.G.
94.4 99.9 46.8 At3g20990 3768792 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
93.6 99.9 35.2 At4g39160 830071 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:unknown;C:unknown;OMFBPVA O.I. C.G. H.G.
92.0 99.9 438.4 At5g02490 831856 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
92.0 99.9 39.5 At3g27330 822354 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV O.I. C.G. H.G.
91.9 99.9 117.2 At5g57120 835816 - F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1061.0	100.0	46.1	At4g00920	826366	COP1-interacting protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
606.5	100.0	56.9	At1g31400	840030	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
591.8	100.0	64.1	At1g53930	841831	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
542.1	100.0	64.0	At4g09940	826584	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
540.9	100.0	210.9	At4g31360	829263	selenium binding	F:selenium binding;P:cell redox homeostasis;C:unknown;MOPFB	O.I.	C.G.	H.G.
533.4	100.0	123.1	At2g46410	819249	CPC (CAPRICE)	Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.	O.I.	C.G.	H.G.
533.0	100.0	89.6	At4g00390	828200	transcription regulator	F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA	O.I.	C.G.	H.G.
527.8	100.0	714.6	At5g61030	836224	GR-RBP3 (glycine-rich RNA-binding protein 3)	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.	O.I.	C.G.	H.G.
504.7	100.0	201.9	At4g01180	828058	XH/XS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAV	O.I.	C.G.	H.G.
485.2	100.0	318.6	At3g57930	824962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
460.4	100.0	515.8	At1g72440	843576	EDA25 (embryo sac development arrest 25)	F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA	O.I.	C.G.	H.G.
392.6	100.0	79.2	At3g03130	821080	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
378.6	100.0	220.8	At2g27470	817292	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA	O.I.	C.G.	H.G.
371.4	100.0	171.9	At5g61190	836240	zinc finger protein-related	F:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAV	O.I.	C.G.	H.G.
324.6	100.0	183.2	At1g74250	843765	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVA	O.I.	C.G.	H.G.
322.0	100.0	152.9	At1g17140	838284	tropomyosin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
319.0	100.0	58.1	At1g13790	837939	XH/XS domain-containing protein / XS zinc finger domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
286.3	100.0	128.1	At3g49240	824085	emb1796 (embryo defective 1796)	F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBA	O.I.	C.G.	H.G.
280.3	100.0	318.9	At5g60030	836125	unknown protein	F:unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
279.6	100.0	69.4	At5g59340	836053	WOX2 (WUSCHEL RELATED HOMEOBOX 2)	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain.	O.I.	C.G.	H.G.
273.9	100.0	198.6	At4g25730	828678	FtsJ-like methyltransferase family protein	F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA	O.I.	C.G.	H.G.
273.2	100.0	36.6	At2g36550	818228	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVO	O.I.	C.G.	H.G.
269.8	100.0	138.5	At3g51270	824290	ATP binding / catalytic/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
269.5	100.0	344.9	At3g58660	825035	60S ribosomal protein-related	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAV	O.I.	C.G.	H.G.
268.5	100.0	246.5	At3g22660	821837	rRNA processing protein-related	F:unknown;P:unknown;C:cellular_component unknown;MOFBP	O.I.	C.G.	H.G.
259.6	100.0	110.9	At1g71870	843518	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
246.3	100.0	763.2	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
238.0	100.0	78.3	At2g18520	816367	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:membrane;POMFBA	O.I.	C.G.	H.G.
237.5	100.0	128.8	At3g18610	821392	ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)	F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
222.9	100.0	240.6	At1g15940	838164	binding	F:binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
218.5	100.0	180.0	At1g68790	843210	LINC3 (LITTLE NUCLEI3)	F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAV	O.I.	C.G.	H.G.
216.4	100.0	216.2	At3g07050	819890	GTP-binding family protein	F:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAV	O.I.	C.G.	H.G.
214.4	100.0	50.7	At4g29940	829117	PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A)	Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.	O.I.	C.G.	H.G.
194.7	100.0	115.9	At5g05210	830403	nucleolar matrix protein-related	F:unknown;P:unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
194.6	100.0	202.9	At2g40650	818660	pre-mRNA splicing factor PRP38 family protein	F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA	O.I.	C.G.	H.G.
183.7	100.0	84.7	At3g44050	823523	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
178.5	100.0	89.3	At5g23680	832433	sterile alpha motif (SAM) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV	O.I.	C.G.	H.G.
176.8	100.0	363.6	At4g28365	828952	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFM	O.I.	C.G.	H.G.
176.3	100.0	126.1	At2g21440	816683	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
176.2	100.0	288.4	At5g60960	836217	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
176.1	100.0	133.2	At3g45450	823685	Clp amino terminal domain-containing protein	F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV	O.I.	C.G.	H.G.
174.3	100.0	253.1	At3g02760	820930	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP	O.I.	C.G.	H.G.
173.3	100.0	92.0	At5g19300	832050	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAV	O.I.	C.G.	H.G.
172.8	100.0	51.8	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
170.0	100.0	143.4	At1g15910	838161	XH/XS domain-containing protein / XS zinc finger domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
169.1	100.0	192.2	At3g59820	825151	calcium-binding mitochondrial protein-related	F:calcium ion binding;P:unknown;C:mitochondrion;MOFBPAV	O.I.	C.G.	H.G.
168.8	100.0	56.3	At4g37110	829865	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
168.1	100.0	91.6	At3g14900	820719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA	O.I.	C.G.	H.G.
167.8	100.0	288.1	At3g07030	3768790	nucleic acid binding	F:nucleic acid binding;P:unknown;C:unknown	O.I.	C.G.	H.G.
162.6	99.9	105.0	At3g51280	824291	male sterility MS5, putative	F:binding;P:unknown;C:cellular_component unknown;OBPAF	O.I.	C.G.	H.G.
150.5	99.9	55.6	At4g28230	828938	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
144.0	99.9	66.5	At1g18950	838476	aminoacyl-tRNA synthetase family	F:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
142.1	99.9	36.0	At2g23530	816885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
141.3	99.9	17.3	At1g13230	837883	leucine-rich repeat family protein	Encodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis.	O.I.	C.G.	H.G.
139.8	99.9	232.8	At1g65440	842855	GTB1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.	O.I.	C.G.	H.G.
137.0	99.9	401.6	At1g47970	841215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
136.5	99.9	172.9	At2g07696	815372	ribosomal protein S7 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAF	O.I.	C.G.	H.G.
134.0	99.9	168.7	At1g11240	837665	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
133.7	99.9	173.9	At3g24250	822012	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
132.4	99.9	112.6	At3g19650	821502	cyclin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
130.9	99.9	46.8	At5g55520	835646	-	F:unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
129.0	99.9	80.2	At3g02400	821210	forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein	F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
127.9	99.9	112.0	At1g52290	841659	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
126.8	99.9	73.6	At2g27170	817259	TTN7 (TITAN7)	cohesin	O.I.	C.G.	H.G.
125.4	99.9	190.4	At1g08580	837380	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
124.6	99.9	94.3	At1g19880	838576	regulator of chromosome condensation (RCC1) family protein	F:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
120.5	99.9	69.8	At5g16950	831558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
119.9	99.9	54.1	At5g44700	834499	GSO2 (GASSHO 2)	Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.	O.I.	C.G.	H.G.
117.4	99.9	20.3	At5g43530	834373	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	F:in 8 functions;P:unknown;C:chloroplast envelope;MBOFPVA	O.I.	C.G.	H.G.
116.3	99.9	52.4	At1g55040	841947	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVA	O.I.	C.G.	H.G.
113.6	99.9	373.5	At4g17520	827467	nuclear RNA-binding protein, putative	F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA	O.I.	C.G.	H.G.
112.1	99.9	49.1	At5g03670	831763	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB	O.I.	C.G.	H.G.
111.5	99.9	33.4	At4g31615	829289	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
110.8	99.9	260.0	At3g50690	824233	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
109.8	99.9	78.3	At1g64600	842768	copper ion binding / methyltransferase	F:methyltransferase activity, copper ion binding;P:translation;C:cellular_component unknown;MFOBP	O.I.	C.G.	H.G.
109.0	99.9	308.6	At5g48870	834945	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.	O.I.	C.G.	H.G.
107.1	99.9	28.3	At4g31760	829304	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
106.5	99.9	136.3	At3g24080	821994	KRR1 family protein	F:molecular_function unknown;P:response to salt stress;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
105.9	99.9	41.0	At1g03830	839398	guanylate-binding family protein	F:GTP binding, GTPase activity;P:immune response;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
105.6	99.9	244.9	At1g15200	838086	protein-protein interaction regulator family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
104.4	99.9	197.3	At2g25670	817108	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
103.9	99.9	504.9	At2g30810	817632	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
103.4	99.9	58.2	At5g27550	832815	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex	O.I.	C.G.	H.G.
102.3	99.9	135.7	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
101.8	99.9	37.1	At4g10640	826656	IQD16 (IQ-domain 16)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
101.0	99.9	195.6	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
101.0	99.9	28.5	At1g49110	841334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
100.3	99.9	78.9	At5g53800	835461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
100.0	99.9	72.9	At1g53720	841810	CYP59 (CYCLOPHILIN 59)	Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis� trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.	O.I.	C.G.	H.G.
97.5	99.9	158.8	At5g64670	836588	ribosomal protein L15 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, large ribosomal subunit;BOMFP	O.I.	C.G.	H.G.
95.9	99.9	43.3	At5g03870	831685	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
95.5	99.9	121.1	At5g27330	832791	-	F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAV	O.I.	C.G.	H.G.
94.8	99.9	47.2	At5g25580	832633	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
94.6	99.9	121.8	At2g39220	818507	PLP6 (PATATIN-LIKE PROTEIN 6)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF	O.I.	C.G.	H.G.
94.6	99.9	27.0	At4g26660	828773	-	F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAV	O.I.	C.G.	H.G.
94.4	99.9	46.8	At3g20990	3768792	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
93.6	99.9	35.2	At4g39160	830071	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:unknown;C:unknown;OMFBPVA	O.I.	C.G.	H.G.
92.0	99.9	438.4	At5g02490	831856	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
92.0	99.9	39.5	At3g27330	822354	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
91.9	99.9	117.2	At5g57120	835816	-	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.

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GSM ID	GSM311274
Assay name	Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2
GSE experiment	GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

Microarray experiments to specifically-expressed genes

GSM ID GSM311274 Assay name Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage

GSM ID GSM311274

Assay name Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2

GSE experiment GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage